UHGV-0172266

Genome information

Genome length 24,072 bps

CDS count 42

Completeness 55.37% (medium-quality)

geNomad score 0.9740

Prediction confidence Confident

Genome information
Genome ID	UHGV-0172266
vOTU ID	vOTU-028596
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_590461
BioSample	SAMN09781754
Country	Madagascar
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	55.37% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	6
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9740
Virus hallmark genes (geNomad)	3
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	17.52
Jumbo phage	No

Genome content
Genome length	24,072 bps
GC content	43.20%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	42
CDS density	91.71%
Average CDS length	530.43 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0172266_1	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0172266_1	eggNOG-mapper	476272.RUMHYD_01778	NA	NA
UHGV-0172266_2	PHROG	phrog_1233	NA	unknown function
UHGV-0172266_2	eggNOG-mapper	1256908.HMPREF0373_00487	NA	NA
UHGV-0172266_3	PHROG	phrog_1129	holin	lysis
UHGV-0172266_3	UniRef90	UniRef90_A0A395X7B2	Enolase	NA
UHGV-0172266_3	eggNOG-mapper	411461.DORFOR_00721	NA	NA
UHGV-0172266_3	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-0172266_3	Structural annotation	PF06946	NA	NA
UHGV-0172266_5	PHROG	phrog_8680	NA	unknown function
UHGV-0172266_5	UniRef90	UniRef90_UPI001C0F342A	NA	NA
UHGV-0172266_5	eggNOG-mapper	411470.RUMGNA_02208	NA	NA
UHGV-0172266_5	Pfam	PF14386	NA	DUF4417
UHGV-0172266_5	Structural annotation	PF14386	NA	NA
UHGV-0172266_6	PHROG	phrog_18218	NA	unknown function
UHGV-0172266_6	UniRef90	UniRef90_A0A8D9PGR5	Holin	NA
UHGV-0172266_6	eggNOG-mapper	411902.CLOBOL_03424	NA	NA
UHGV-0172266_6	Structural annotation	PF06946	NA	NA
UHGV-0172266_7	PHROG	phrog_8680	NA	unknown function
UHGV-0172266_7	UniRef90	UniRef90_UPI001C0F342A	NA	NA
UHGV-0172266_7	eggNOG-mapper	411470.RUMGNA_02208	NA	NA
UHGV-0172266_7	Pfam	PF14386	NA	DUF4417
UHGV-0172266_7	Structural annotation	PF14386	NA	NA
UHGV-0172266_8	PHROG	phrog_3366	NA	unknown function
UHGV-0172266_8	eggNOG-mapper	476272.RUMHYD_01779	NA	NA
UHGV-0172266_8	Structural annotation	PF20536, COG5614	NA	NA
UHGV-0172266_11	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0172266_11	UniRef90	UniRef90_UPI000E4989EB	minor capsid protein	NA
UHGV-0172266_11	eggNOG-mapper	476272.RUMHYD_01780	NA	NA
UHGV-0172266_11	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0172266_11	Structural annotation	PF11114	NA	NA
UHGV-0172266_12	PHROG	phrog_3266	tail completion	connector
UHGV-0172266_12	eggNOG-mapper	476272.RUMHYD_01781	NA	NA
UHGV-0172266_12	Structural annotation	PF12691	NA	NA
UHGV-0172266_13	PHROG	phrog_3099	NA	unknown function
UHGV-0172266_13	eggNOG-mapper	476272.RUMHYD_01782	NA	NA
UHGV-0172266_13	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0172266_14	PHROG	phrog_11299	NA	unknown function
UHGV-0172266_14	eggNOG-mapper	411459.RUMOBE_01382	NA	NA
UHGV-0172266_14	Structural annotation	PF10666	NA	NA
UHGV-0172266_15	PHROG	phrog_706	NA	unknown function
UHGV-0172266_15	UniRef90	UniRef90_A0A1I0K8S4	Bacteriophage Gp15 protein	NA
UHGV-0172266_15	eggNOG-mapper	33035.JPJF01000106_gene3124	Bacteriophage Gp15 protein	NA
UHGV-0172266_15	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0172266_15	Structural annotation	PF06854	NA	NA
UHGV-0172266_16	PHROG	phrog_37543	NA	unknown function
UHGV-0172266_16	UniRef90	UniRef90_UPI001DBC5439	PspA/IM30 family protein	NA
UHGV-0172266_16	eggNOG-mapper	411459.RUMOBE_01384	phage tail tape measure protein	NA
UHGV-0172266_16	COG	COG5412	Phage-related protein	NA
UHGV-0172266_17	PHROG	phrog_1194	NA	unknown function
UHGV-0172266_17	eggNOG-mapper	411902.CLOBOL_00125	NA	NA
UHGV-0172266_17	Structural annotation	PF20458, TIGR01633, COG3499	NA	NA
UHGV-0172266_18	PHROG	phrog_32744	NA	unknown function
UHGV-0172266_18	eggNOG-mapper	411902.CLOBOL_00124	NA	NA
UHGV-0172266_18	Structural annotation	PF14594, PF03256, NF033848, COG4379, COG5156	NA	NA
UHGV-0172266_19	PHROG	phrog_18725	NA	unknown function
UHGV-0172266_19	eggNOG-mapper	411902.CLOBOL_00123	NA	NA
UHGV-0172266_20	eggNOG-mapper	411902.CLOBOL_00122	NA	NA
UHGV-0172266_21	eggNOG-mapper	1298920.KI911353_gene541	ATPase involved in DNA repair	NA
UHGV-0172266_21	COG	COG0419	DNA repair exonuclease SbcCD ATPase subunit	NA
UHGV-0172266_22	eggNOG-mapper	1298920.KI911353_gene541	ATPase involved in DNA repair	NA
UHGV-0172266_22	COG	COG0419	DNA repair exonuclease SbcCD ATPase subunit	NA
UHGV-0172266_22	Structural annotation	PF03425, NF033675	NA	NA
UHGV-0172266_26	KOfam	K14059	int; integrase	NA
UHGV-0172266_26	PHROG	phrog_1	integrase	integration and excision
UHGV-0172266_26	UniRef90	UniRef90_A0A395X9D5	Site-specific integrase	NA
UHGV-0172266_26	eggNOG-mapper	1304866.K413DRAFT_1180	Belongs to the 'phage' integrase family	NA
UHGV-0172266_26	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0172266_26	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0172266_26	Structural annotation	PF00589, PF12167, MF_02055, NF040815, COG4974	NA	NA
UHGV-0172266_28	PHROG	phrog_6148	beta-lactamase-inhibitor protein BLIP	moron, auxiliary metabolic gene and host takeover
UHGV-0172266_28	UniRef90	UniRef90_UPI0013F64234	NA	NA
UHGV-0172266_28	eggNOG-mapper	1449050.JNLE01000005_gene4075	NA	NA
UHGV-0172266_28	Pfam	PF12978	NA	DUF3862
UHGV-0172266_28	Structural annotation	PF12978, PF20794, MF_00925, NF008423, COG4687, COG2913	NA	NA
UHGV-0172266_29	PHROG	phrog_87	metallo-protease	other
UHGV-0172266_29	UniRef90	UniRef90_A0A173TZ87	Metallopeptidase immA	NA
UHGV-0172266_29	eggNOG-mapper	476272.RUMHYD_01733	IrrE N-terminal-like domain	NA
UHGV-0172266_29	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0172266_29	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0172266_29	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0172266_30	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0172266_30	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0172266_30	UniRef90	UniRef90_A0A844IVA8	Helix-turn-helix transcriptional regulator	NA
UHGV-0172266_30	eggNOG-mapper	411459.RUMOBE_00961	Bacteriophage CI repressor helix-turn-helix domain	NA
UHGV-0172266_30	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0172266_30	COG	COG3093	Plasmid maintenance system antidote protein VapI, contains XRE-type HTH domain	NA
UHGV-0172266_30	Structural annotation	PF12844, MF_00535, NF041951, COG3655	NA	NA
UHGV-0172266_31	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-0172266_31	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0172266_31	UniRef90	UniRef90_A0A7X4Z923	XRE family transcriptional regulator	NA
UHGV-0172266_31	eggNOG-mapper	411460.RUMTOR_02056	Bacteriophage CI repressor helix-turn-helix domain	NA
UHGV-0172266_31	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0172266_31	COG	COG3093	Plasmid maintenance system antidote protein VapI, contains XRE-type HTH domain	NA
UHGV-0172266_31	Structural annotation	PF01381, NF041951, COG3655	NA	NA
UHGV-0172266_33	Structural annotation	PF13601, MF_01819, NF038251, COG1846	NA	NA
UHGV-0172266_37	PHROG	phrog_4433	NA	unknown function
UHGV-0172266_37	eggNOG-mapper	742735.HMPREF9467_00844	NA	NA
UHGV-0172266_42	PHROG	phrog_253	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UHGV-0172266_42	UniRef90	UniRef90_R6SKJ6	Siphovirus family protein	NA
UHGV-0172266_42	eggNOG-mapper	1410670.JHXF01000015_gene2268	Siphovirus Gp157	NA
UHGV-0172266_42	Pfam	PF05565	Siphovirus Gp157	Sipho_Gp157