UHGV-0172271

Genome information

Genome length 23,551 bps

CDS count 36

Completeness 70.36% (medium-quality)

geNomad score 0.9810

Prediction confidence Confident

Genome information
Genome ID	UHGV-0172271
vOTU ID	vOTU-028597
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_580665
BioSample	SAMN09781734
Country	Madagascar
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	70.36% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	16
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9810
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	38.49
Jumbo phage	No

Genome content
Genome length	23,551 bps
GC content	51.38%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	36
CDS density	92.39%
Average CDS length	608.00 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0172271_1	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-0172271_1	PHROG	phrog_1	integrase	integration and excision
UHGV-0172271_1	UniRef90	UniRef90_UPI001D013589	site-specific integrase	NA
UHGV-0172271_1	eggNOG-mapper	1280698.AUJS01000007_gene999	Phage integrase family	NA
UHGV-0172271_1	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0172271_1	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0172271_3	PHROG	phrog_2329	NA	unknown function
UHGV-0172271_3	UniRef90	UniRef90_A0A7X5CB73	AbrB/MazE/SpoVT family DNA-binding domain-containing protein	NA
UHGV-0172271_3	eggNOG-mapper	1292035.H476_0264	NA	NA
UHGV-0172271_3	Structural annotation	PF04014, NF007312, COG2336	NA	NA
UHGV-0172271_5	PHROG	phrog_14030	NA	unknown function
UHGV-0172271_5	UniRef90	UniRef90_A0A417IER1	PG_binding_1 domain-containing protein	NA
UHGV-0172271_5	eggNOG-mapper	1235793.C809_02691	N-Acetylmuramoyl-L-alanine amidase	NA
UHGV-0172271_5	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-0172271_5	COG	COG3023	N-acetyl-anhydromuramyl-L-alanine amidase AmpD	NA
UHGV-0172271_5	Structural annotation	PF01471, NF038080, COG3409	NA	NA
UHGV-0172271_6	PHROG	phrog_443	holin	lysis
UHGV-0172271_6	UniRef90	UniRef90_UPI001C0212A6	holin	NA
UHGV-0172271_6	eggNOG-mapper	626523.GCWU000342_01012	Putative lactococcus lactis phage r1t holin	NA
UHGV-0172271_6	Pfam	PF16945	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
UHGV-0172271_6	Structural annotation	PF16945	NA	NA
UHGV-0172271_7	PHROG	phrog_937	hemolysin	other
UHGV-0172271_7	eggNOG-mapper	742740.HMPREF9474_03172	NA	NA
UHGV-0172271_8	PHROG	phrog_21765	NA	unknown function
UHGV-0172271_8	UniRef90	UniRef90_A0A1C5W6G3	BppU_N domain-containing protein	NA
UHGV-0172271_8	eggNOG-mapper	476272.RUMHYD_03672	PFAM Collagen triple helix	NA
UHGV-0172271_8	COG	COG2931	Ca2+-binding protein, RTX toxin-related	NA
UHGV-0172271_9	PHROG	phrog_5555	tail protein	tail
UHGV-0172271_9	UniRef90	UniRef90_UPI00189BED7C	phage tail protein	NA
UHGV-0172271_9	eggNOG-mapper	1347392.CCEZ01000045_gene1	Phage minor structural protein	NA
UHGV-0172271_9	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0172271_9	Pfam	PF13884	Chaperone of endosialidase	Peptidase_S74
UHGV-0172271_9	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0172271_9	COG	COG4926	Phage-related protein	NA
UHGV-0172271_9	Structural annotation	PF06605, PF18994, TIGR01665, COG4926	NA	NA
UHGV-0172271_10	UniRef90	UniRef90_R6N293	Putative phage tail component domain protein	NA
UHGV-0172271_10	COG	COG4722	Phage-related protein YomH	NA
UHGV-0172271_10	Structural annotation	PF20753, PF20195, TIGR01633, COG4722	NA	NA
UHGV-0172271_11	PHROG	phrog_9959	tail length tape measure protein	tail
UHGV-0172271_11	UniRef90	UniRef90_A0A3A6E908	TMP_3 domain-containing protein	NA
UHGV-0172271_11	eggNOG-mapper	663278.Ethha_0102	Phage tail tape measure protein, TP901 family	NA
UHGV-0172271_11	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-0172271_11	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-0172271_11	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0172271_11	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-0172271_12	PHROG	phrog_706	NA	unknown function
UHGV-0172271_12	UniRef90	UniRef90_A0A175A387	Bacteriophage Gp15 protein	NA
UHGV-0172271_12	eggNOG-mapper	1449343.JQLQ01000002_gene1325	Bacteriophage Gp15 protein	NA
UHGV-0172271_12	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0172271_12	Structural annotation	PF06854	NA	NA
UHGV-0172271_13	Structural annotation	PF10666	NA	NA
UHGV-0172271_14	PHROG	phrog_820	major tail protein	tail
UHGV-0172271_14	UniRef90	UniRef90_A0A3A6EPU8	S-l_SbsC_C domain-containing protein	NA
UHGV-0172271_14	eggNOG-mapper	428125.CLOLEP_00178	Belongs to the glycosyl hydrolase family 6	NA
UHGV-0172271_14	COG	COG5492	NA	NA
UHGV-0172271_14	Structural annotation	PF06199, PF18316, TIGR02126, COG5437	NA	NA
UHGV-0172271_15	Structural annotation	PF12691	NA	NA
UHGV-0172271_16	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0172271_16	UniRef90	UniRef90_UPI001899C432	minor capsid protein	NA
UHGV-0172271_16	eggNOG-mapper	1214217.ALNF01000014_gene1371	Minor capsid protein	NA
UHGV-0172271_16	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0172271_16	Structural annotation	PF11114, TIGR01725	NA	NA
UHGV-0172271_17	UniRef90	UniRef90_UPI001D06E7F2	minor capsid protein	NA
UHGV-0172271_17	Structural annotation	PF10665, TIGR01563, COG5614	NA	NA
UHGV-0172271_18	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0172271_19	PHROG	phrog_422	major head protein	head and packaging
UHGV-0172271_19	UniRef90	UniRef90_A0A316T938	S-l_SbsC_C domain-containing protein	NA
UHGV-0172271_19	eggNOG-mapper	428125.CLOLEP_00183	COG NOG28280 non supervised orthologous group	NA
UHGV-0172271_19	Structural annotation	PF19821, PF18316, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0172271_21	Structural annotation	PF14530, MF_01441, NF009990, COG0783	NA	NA
UHGV-0172271_22	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0172271_22	UniRef90	UniRef90_UPI001E5C8078	phage minor capsid protein	NA
UHGV-0172271_22	eggNOG-mapper	428125.CLOLEP_01802	NA	NA
UHGV-0172271_22	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0172271_22	COG	COG2369	NA	NA
UHGV-0172271_22	Structural annotation	PF06152	NA	NA
UHGV-0172271_23	PHROG	phrog_533	portal protein	head and packaging
UHGV-0172271_23	UniRef90	UniRef90_UPI001898C571	phage portal protein	NA
UHGV-0172271_23	eggNOG-mapper	428125.CLOLEP_01803	NA	NA
UHGV-0172271_23	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0172271_23	NCBIFam	TIGR01542.1	phage portal protein	NA
UHGV-0172271_23	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0172271_24	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0172271_24	PHROG	phrog_29775	NA	unknown function
UHGV-0172271_24	UniRef90	UniRef90_A0A1C6FVY4	Phage terminase, large subunit, PBSX family	NA
UHGV-0172271_24	eggNOG-mapper	428125.CLOLEP_01804	Phage terminase, large subunit, PBSX family	NA
UHGV-0172271_24	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0172271_24	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0172271_24	COG	COG1783	Phage terminase large subunit	NA
UHGV-0172271_24	Structural annotation	PF04466, PF20441, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0172271_25	PHROG	phrog_309	terminase small subunit	head and packaging
UHGV-0172271_25	UniRef90	UniRef90_UPI00046706B5	transposase	NA
UHGV-0172271_25	eggNOG-mapper	742733.HMPREF9469_01828	transposase activity	NA
UHGV-0172271_25	Pfam	PF01527	Transposase	HTH_Tnp_1
UHGV-0172271_25	COG	COG2963	Transposase InsE and inactivated derivatives	NA
UHGV-0172271_25	Structural annotation	PF07141	NA	NA
UHGV-0172271_26	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0172271_26	UniRef90	UniRef90_A0A3R6NEA8	Sigma-70 family RNA polymerase sigma factor	NA
UHGV-0172271_26	eggNOG-mapper	742740.HMPREF9474_04310	NA	NA
UHGV-0172271_26	Structural annotation	PF07374, MF_00674, NF001074	NA	NA
UHGV-0172271_29	KOfam	K19779	ralR; endodeoxyribonuclease RalR [EC:3.1.-.-]	NA
UHGV-0172271_29	PHROG	phrog_599	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
UHGV-0172271_29	UniRef90	UniRef90_A0A7C1L2V1	Restriction alleviation protein, Lar family	NA
UHGV-0172271_29	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-0172271_29	NCBIFam	TIGR03655.1	Lar family restriction alleviation protein	NA
UHGV-0172271_29	dbAPIS	APIS033	Lar is functionally similar to RaI, is able to alleviate restriction and enhance modification by EcoKI. And the nucleotide sequences of their genes share 47% identity, indicating a common origin.	NA
UHGV-0172271_29	Structural annotation	PF14354, TIGR03655	NA	NA
UHGV-0172271_30	PHROG	phrog_355	nucleoside 2-deoxyribosyltransferase	DNA, RNA and nucleotide metabolism
UHGV-0172271_30	UniRef90	UniRef90_UPI001BBBA8BA	NA	NA
UHGV-0172271_30	eggNOG-mapper	1321782.HMPREF1986_02257	NA	NA
UHGV-0172271_30	Pfam	PF14359	NA	DUF4406
UHGV-0172271_30	Structural annotation	PF14359, MF_03036, TIGR02133, COG3613	NA	NA
UHGV-0172271_31	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-0172271_31	PHROG	phrog_67	DNA methyltransferase	other
UHGV-0172271_31	UniRef90	UniRef90_A0A373NSG0	Methyltransferase	NA
UHGV-0172271_31	eggNOG-mapper	658655.HMPREF0988_00878	DNA methylase	NA
UHGV-0172271_31	PADLOC	MTase_II_00157	Type II methyltransferase	RM
UHGV-0172271_31	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0172271_31	COG	COG0863	DNA modification methylase	NA
UHGV-0172271_31	Structural annotation	PF01555, MF_01872, NF010253, COG0863	NA	NA
UHGV-0172271_33	eggNOG-mapper	1499968.TCA2_4415	NA	NA
UHGV-0172271_33	Structural annotation	PF12286	NA	NA
UHGV-0172271_34	Pfam	PF12773	Double zinc ribbon	DZR
UHGV-0172271_36	PHROG	phrog_419	NA	unknown function
UHGV-0172271_36	UniRef90	UniRef90_A0A4U9RIR3	NA	NA
UHGV-0172271_36	eggNOG-mapper	476272.RUMHYD_03324	NA	NA
UHGV-0172271_36	Structural annotation	PF14083	NA	NA