UHGV-0172331

Genome information

Genome length 24,287 bps

CDS count 39

Completeness 57.53% (medium-quality)

geNomad score 0.9823

Prediction confidence Confident

Genome information
Genome ID	UHGV-0172331
vOTU ID	vOTU-028601
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_583767
BioSample	SAMN09781759
Country	Madagascar
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	57.53% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	14
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9823
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	29.17
Jumbo phage	No

Genome content
Genome length	24,287 bps
GC content	55.54%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	39
CDS density	95.12%
Average CDS length	594.39 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0172331_2	PHROG	phrog_20016	NA	unknown function
UHGV-0172331_2	UniRef90	UniRef90_A0A285PT46	Tumour necrosis factor-like domain	NA
UHGV-0172331_2	eggNOG-mapper	1226322.HMPREF1545_00077	NA	NA
UHGV-0172331_2	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0172331_4	PHROG	phrog_16490	NA	unknown function
UHGV-0172331_4	eggNOG-mapper	397290.C810_01328	NA	NA
UHGV-0172331_5	PHROG	phrog_22984	NA	unknown function
UHGV-0172331_6	PHROG	phrog_21718	NA	unknown function
UHGV-0172331_6	eggNOG-mapper	397290.C810_05210	NA	NA
UHGV-0172331_7	PHROG	phrog_3754	NA	unknown function
UHGV-0172331_7	eggNOG-mapper	1485543.JMME01000025_gene2462	NA	NA
UHGV-0172331_8	PHROG	phrog_5765	NA	unknown function
UHGV-0172331_8	UniRef90	UniRef90_A0A6L8XUI5	BC1881 family protein	NA
UHGV-0172331_8	eggNOG-mapper	748727.CLJU_c31430	NA	NA
UHGV-0172331_8	NCBIFam	NF033495.1	BC1881 family protein	NA
UHGV-0172331_12	KOfam	K24213	C1QTNF9; complement C1q and tumor necrosis factor-related protein 9	NA
UHGV-0172331_12	PHROG	phrog_5073	tail fiber protein	tail
UHGV-0172331_12	eggNOG-mapper	411483.FAEPRAA2165_00757	NA	NA
UHGV-0172331_12	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-0172331_13	PHROG	phrog_15303	NA	unknown function
UHGV-0172331_13	Pfam	PF09682	Bacteriophage holin of superfamily 6 (Holin_LLH)	Phage_holin_6_1
UHGV-0172331_15	KOfam	K07273	acm; lysozyme	NA
UHGV-0172331_15	PHROG	phrog_291	endolysin	lysis
UHGV-0172331_15	UniRef90	UniRef90_E2ZES5	Glycosyl hydrolase family 25	NA
UHGV-0172331_15	eggNOG-mapper	748224.HMPREF9436_00154	hydrolase, family 25	NA
UHGV-0172331_15	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0172331_15	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-0172331_15	Structural annotation	PF01183, COG3757	NA	NA
UHGV-0172331_16	PHROG	phrog_1382	NA	unknown function
UHGV-0172331_18	PHROG	phrog_9534	head protein	head and packaging
UHGV-0172331_18	eggNOG-mapper	748224.HMPREF9436_01407	COG NOG18825 non supervised orthologous group	NA
UHGV-0172331_19	PHROG	phrog_3558	tail protein	tail
UHGV-0172331_19	UniRef90	UniRef90_R9C6X0	Phage minor structural protein	NA
UHGV-0172331_19	eggNOG-mapper	610130.Closa_0754	NA	NA
UHGV-0172331_19	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0172331_19	COG	COG4926	Phage-related protein	NA
UHGV-0172331_19	Structural annotation	PF14594, TIGR01665, COG4379	NA	NA
UHGV-0172331_20	UniRef90	UniRef90_A0A417QGC1	MtfA protein	NA
UHGV-0172331_20	eggNOG-mapper	1235792.C808_00094	phage tail	NA
UHGV-0172331_20	COG	COG4722	Phage-related protein YomH	NA
UHGV-0172331_20	Structural annotation	PF05709, PF02408, TIGR01633, COG4722	NA	NA
UHGV-0172331_21	PHROG	phrog_28775	tail length tape measure protein	tail
UHGV-0172331_21	UniRef90	UniRef90_A0A6N7TLD3	Tape measure protein	NA
UHGV-0172331_21	eggNOG-mapper	1492737.FEM08_12070	tape measure	NA
UHGV-0172331_21	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-0172331_21	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-0172331_21	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0172331_21	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-0172331_24	PHROG	phrog_885	major tail protein	tail
UHGV-0172331_24	eggNOG-mapper	1111121.HMPREF1247_0789	NA	NA
UHGV-0172331_24	Structural annotation	PF06488, TIGR01603, COG5437	NA	NA
UHGV-0172331_25	Structural annotation	PF13554	NA	NA
UHGV-0172331_26	PHROG	phrog_17977	NA	unknown function
UHGV-0172331_26	UniRef90	UniRef90_A0A844DHJ8	Phage head closure protein	NA
UHGV-0172331_26	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0172331_28	PHROG	phrog_544	major head protein	head and packaging
UHGV-0172331_28	UniRef90	UniRef90_A0A1C6B5R0	S-l_SbsC_C domain-containing protein	NA
UHGV-0172331_28	eggNOG-mapper	476272.RUMHYD_01776	NA	NA
UHGV-0172331_28	Structural annotation	PF03864, MF_04119, TIGR04387, COG4834	NA	NA
UHGV-0172331_29	Structural annotation	PF06810	NA	NA
UHGV-0172331_31	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0172331_31	UniRef90	UniRef90_A0A6N7TNP6	HK97 gp10 family phage protein	NA
UHGV-0172331_31	eggNOG-mapper	929506.CbC4_1219	NA	NA
UHGV-0172331_31	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0172331_31	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-0172331_31	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-0172331_33	Structural annotation	PF17599, PF14282, NF011879	NA	NA
UHGV-0172331_34	PHROG	phrog_8680	NA	unknown function
UHGV-0172331_34	UniRef90	UniRef90_A0A6N7TNE8	NA	NA
UHGV-0172331_34	eggNOG-mapper	1423790.BN53_04265	Belongs to the N(4) N(6)-methyltransferase family	NA
UHGV-0172331_34	Pfam	PF14386	NA	DUF4417
UHGV-0172331_34	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0172331_34	Structural annotation	PF14386	NA	NA
UHGV-0172331_36	PHROG	phrog_2468	head morphogenesis	head and packaging
UHGV-0172331_36	UniRef90	UniRef90_A0A6N7TLR7	Phage_Mu_F domain-containing protein	NA
UHGV-0172331_36	eggNOG-mapper	1504822.CCNO01000013_gene286	cell adhesion	NA
UHGV-0172331_36	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0172331_36	COG	COG2369	NA	NA
UHGV-0172331_36	Structural annotation	PF04233, TIGR01641, COG2369	NA	NA
UHGV-0172331_38	PHROG	phrog_64	portal protein	head and packaging
UHGV-0172331_38	UniRef90	UniRef90_A0A6N7TNT3	Phage portal protein	NA
UHGV-0172331_38	eggNOG-mapper	1042156.CXIVA_01850	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0172331_38	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0172331_38	Structural annotation	PF05133, MF_04120, TIGR01538, COG3567	NA	NA
UHGV-0172331_39	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0172331_39	PHROG	phrog_10250	NA	unknown function
UHGV-0172331_39	UniRef90	UniRef90_A0A844D8I4	PBSX family phage terminase large subunit	NA
UHGV-0172331_39	eggNOG-mapper	903814.ELI_3215	Phage terminase large subunit	NA
UHGV-0172331_39	Pfam	PF17289	Terminase RNaseH-like domain	Terminase_6C
UHGV-0172331_39	COG	COG1783	Phage terminase large subunit	NA
UHGV-0172331_39	Structural annotation	PF20441, MF_04148, TIGR01547, COG5323	NA	NA