UHGV-0172344

Genome information

Genome length 39,356 bps

CDS count 66

Completeness 97.66% (high-quality)

geNomad score 0.9775

Prediction confidence Confident

Genome information
Genome ID	UHGV-0172344
vOTU ID	vOTU-010868
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_585710
BioSample	NA
Country	Madagascar
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	97.66% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	11
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9775
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	17.71
Jumbo phage	No

Genome content
Genome length	39,356 bps
GC content	43.22%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	66
CDS density	91.54%
Average CDS length	549.36 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0172344_1	PHROG	phrog_27197	NA	unknown function
UHGV-0172344_1	eggNOG-mapper	886882.PPSC2_p0048	regulation of DNA-templated transcription, elongation	NA
UHGV-0172344_1	COG	COG5164	Transcription elongation factor SPT5	NA
UHGV-0172344_1	Structural annotation	NF007410	NA	NA
UHGV-0172344_2	PHROG	phrog_7838	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0172344_2	eggNOG-mapper	742767.HMPREF9456_02397	NA	NA
UHGV-0172344_2	Structural annotation	PF04098, TIGR00607, COG4380	NA	NA
UHGV-0172344_3	PHROG	phrog_434	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0172344_3	UniRef90	UniRef90_UPI001CF8591D	YqaJ viral recombinase family protein	NA
UHGV-0172344_3	eggNOG-mapper	1122146.AUHP01000010_gene1042	YqaJ viral recombinase family	NA
UHGV-0172344_3	Pfam	PF09588	YqaJ-like viral recombinase domain	YqaJ
UHGV-0172344_3	COG	COG5377	Phage-related protein, predicted endonuclease	NA
UHGV-0172344_3	Structural annotation	PF10926, MF_03030, TIGR03033, COG5377	NA	NA
UHGV-0172344_4	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-0172344_4	PHROG	phrog_7370	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0172344_4	UniRef90	UniRef90_UPI000B35C308	HNH endonuclease	NA
UHGV-0172344_4	eggNOG-mapper	1232449.BAHV02000016_gene1841	HNH nucleases	NA
UHGV-0172344_4	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0172344_5	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0172344_5	UniRef90	UniRef90_A0A8D9PDS2	NinB protein	NA
UHGV-0172344_5	eggNOG-mapper	445972.ANACOL_01825	NA	NA
UHGV-0172344_5	Pfam	PF05772	NinB protein	NinB
UHGV-0172344_7	PHROG	phrog_2514	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0172344_7	eggNOG-mapper	272626.lin2412	Replication initiation and membrane attachment	NA
UHGV-0172344_7	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0172344_7	Structural annotation	PF01978, NF033788, COG1846	NA	NA
UHGV-0172344_8	PHROG	phrog_9804	NA	unknown function
UHGV-0172344_8	UniRef90	UniRef90_A0A3A9I1A3	Inhibitor_G39P domain-containing protein	NA
UHGV-0172344_8	eggNOG-mapper	632292.Calhy_0752	Loader and inhibitor of phage G40P	NA
UHGV-0172344_8	AcrCatalog	cluster_137185	NA	NA
UHGV-0172344_8	Pfam	PF11417	Loader and inhibitor of phage G40P	Inhibitor_G39P
UHGV-0172344_8	Structural annotation	PF11417	NA	NA
UHGV-0172344_9	PHROG	phrog_2245	nucleoside triphosphate pyrophosphohydrolase	other
UHGV-0172344_9	UniRef90	UniRef90_A0A1E3UAI9	MazG domain-containing protein	NA
UHGV-0172344_9	eggNOG-mapper	658655.HMPREF0988_00885	NA	NA
UHGV-0172344_10	Structural annotation	PF19157	NA	NA
UHGV-0172344_11	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0172344_11	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0172344_11	UniRef90	UniRef90_R6E0A2	Single-stranded DNA-binding protein	NA
UHGV-0172344_11	eggNOG-mapper	888727.HMPREF9092_0557	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-0172344_11	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0172344_11	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0172344_11	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0172344_11	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0172344_11	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-0172344_12	PHROG	phrog_244	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0172344_12	eggNOG-mapper	1280692.AUJL01000025_gene2095	NA	NA
UHGV-0172344_12	Structural annotation	PF01870, MF_01490, NF040854, COG1591	NA	NA
UHGV-0172344_17	PHROG	phrog_10714	NA	unknown function
UHGV-0172344_17	UniRef90	UniRef90_R5R2P7	DNA polymerase II large subunit	NA
UHGV-0172344_17	eggNOG-mapper	537007.BLAHAN_05460	NA	NA
UHGV-0172344_20	PHROG	phrog_1485	NA	unknown function
UHGV-0172344_20	UniRef90	UniRef90_A0A3S8RPB6	NA	NA
UHGV-0172344_20	eggNOG-mapper	1415774.U728_1099	NA	NA
UHGV-0172344_20	Pfam	PF07659	Nucleotide modification associated domain 1	DUF1599
UHGV-0172344_20	Structural annotation	PF07659	NA	NA
UHGV-0172344_22	Structural annotation	PF18066	NA	NA
UHGV-0172344_23	Structural annotation	PF05263, TIGR01636	NA	NA
UHGV-0172344_27	PHROG	phrog_15863	NA	unknown function
UHGV-0172344_27	UniRef90	UniRef90_A0A644WI33	J domain-containing protein	NA
UHGV-0172344_27	eggNOG-mapper	693746.OBV_01780	DnaJ molecular chaperone homology domain	NA
UHGV-0172344_27	COG	COG2214	Curved DNA-binding protein CbpA, contains a DnaJ-like domain	NA
UHGV-0172344_28	Structural annotation	NF040976	NA	NA
UHGV-0172344_31	PHROG	phrog_38	terminase large subunit	head and packaging
UHGV-0172344_31	UniRef90	UniRef90_A0A845QMQ7	Terminase	NA
UHGV-0172344_31	eggNOG-mapper	755731.Clo1100_2438	TIGRFAM Phage	NA
UHGV-0172344_31	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0172344_31	Pfam	PF17289	Terminase RNaseH-like domain	Terminase_6C
UHGV-0172344_31	NCBIFam	TIGR01630.1	phage terminase large subunit	NA
UHGV-0172344_31	COG	COG5362	Phage terminase large subunit	NA
UHGV-0172344_31	Structural annotation	PF17289, PF05876, MF_04147, NF033889, COG5362, COG5410	NA	NA
UHGV-0172344_33	PHROG	phrog_156	portal protein	head and packaging
UHGV-0172344_33	eggNOG-mapper	1232449.BAHV02000016_gene1822	NA	NA
UHGV-0172344_33	Structural annotation	PF16510, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0172344_35	PHROG	phrog_267	major head protein	head and packaging
UHGV-0172344_35	UniRef90	UniRef90_A0A352WS63	P22 coat protein-protein 5 domain protein	NA
UHGV-0172344_35	eggNOG-mapper	665956.HMPREF1032_03906	P22 coat protein-protein 5 domain protein	NA
UHGV-0172344_35	Structural annotation	PF19821, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0172344_36	Structural annotation	PF07100, COG4288	NA	NA
UHGV-0172344_38	PHROG	phrog_3287	virion structural protein	head and packaging
UHGV-0172344_38	eggNOG-mapper	1232449.BAHV02000016_gene1816	NA	NA
UHGV-0172344_38	Structural annotation	PF11134, MF_01282, TIGR03300, COG5276	NA	NA
UHGV-0172344_39	eggNOG-mapper	1408422.JHYF01000026_gene3527	nuclear chromosome segregation	NA
UHGV-0172344_39	COG	COG5301	Phage-related tail fiber protein	NA
UHGV-0172344_40	UniRef90	UniRef90_A0A3D2YEL7	NA	NA
UHGV-0172344_40	eggNOG-mapper	428125.CLOLEP_00241	leucine binding	NA
UHGV-0172344_40	Pfam	PF07523	Bacterial Ig-like domain (group 3)	Big_3
UHGV-0172344_40	Pfam	PF19789	NA	DUF6273
UHGV-0172344_40	COG	COG0683	ABC-type branched-chain amino acid transport system, periplasmic component	NA
UHGV-0172344_40	Structural annotation	PF19789	NA	NA
UHGV-0172344_41	KOfam	K18454	deaA; chitin disaccharide deacetylase [EC:3.5.1.105]	NA
UHGV-0172344_41	PHROG	phrog_30034	NA	unknown function
UHGV-0172344_41	UniRef90	UniRef90_A0A2Y9CAD1	Carbohydrate binding domain-containing protein	NA
UHGV-0172344_41	eggNOG-mapper	552398.HMPREF0866_03095	NA	NA
UHGV-0172344_41	Pfam	PF02839	Carbohydrate-binding module family 5/12	CBM_5_12
UHGV-0172344_42	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-0172344_42	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-0172344_42	Structural annotation	TIGR02559	NA	NA
UHGV-0172344_43	UniRef90	UniRef90_A0A845QMU2	PBECR3 domain-containing protein	NA
UHGV-0172344_43	eggNOG-mapper	1408437.JNJN01000060_gene452	heme binding	NA
UHGV-0172344_43	COG	COG0503	Adenine/guanine phosphoribosyltransferase or related PRPP-binding protein	NA
UHGV-0172344_43	Structural annotation	PF18857, PF18798	NA	NA
UHGV-0172344_44	UniRef90	UniRef90_A0A7X6X882	CHAP domain-containing protein	NA
UHGV-0172344_44	eggNOG-mapper	552396.HMPREF0863_01358	CHAP domain	NA
UHGV-0172344_44	Pfam	PF05257	CHAP domain	CHAP
UHGV-0172344_44	COG	COG3942	Surface antigen	NA
UHGV-0172344_44	Structural annotation	COG3942	NA	NA
UHGV-0172344_45	PHROG	phrog_4105	NA	unknown function
UHGV-0172344_45	eggNOG-mapper	742740.HMPREF9474_02252	NA	NA
UHGV-0172344_46	PHROG	phrog_13256	NA	unknown function
UHGV-0172344_46	eggNOG-mapper	1226322.HMPREF1545_00132	NA	NA
UHGV-0172344_47	UniRef90	UniRef90_A0A843HPX3	Sigma-70 family RNA polymerase sigma factor	NA
UHGV-0172344_47	eggNOG-mapper	476272.RUMHYD_01951	NA	NA
UHGV-0172344_47	Structural annotation	PF13404, TIGR01636	NA	NA
UHGV-0172344_48	PHROG	phrog_21718	NA	unknown function
UHGV-0172344_48	eggNOG-mapper	397290.C810_05210	NA	NA
UHGV-0172344_50	PHROG	phrog_16490	NA	unknown function
UHGV-0172344_50	eggNOG-mapper	641112.ACOK01000103_gene525	NA	NA
UHGV-0172344_51	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0172344_53	KOfam	K14059	int; integrase	NA
UHGV-0172344_53	PHROG	phrog_1	integrase	integration and excision
UHGV-0172344_53	UniRef90	UniRef90_A0A845QLR8	Tyr recombinase domain-containing protein	NA
UHGV-0172344_53	eggNOG-mapper	936375.HMPREF1152_1040	Phage integrase family	NA
UHGV-0172344_53	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0172344_53	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0172344_53	Structural annotation	PF00589, PF14659, MF_01808, TIGR02224, COG4974	NA	NA
UHGV-0172344_56	PHROG	phrog_20936	NA	unknown function
UHGV-0172344_56	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0172344_56	Structural annotation	PF06114	NA	NA
UHGV-0172344_57	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0172344_57	UniRef90	UniRef90_A0A7G9G8R5	Helix-turn-helix transcriptional regulator	NA
UHGV-0172344_57	eggNOG-mapper	411462.DORLON_00819	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0172344_57	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0172344_57	Structural annotation	PF12844, MF_00535, NF041951, COG3655	NA	NA
UHGV-0172344_58	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0172344_58	UniRef90	UniRef90_UPI0018AA5D9A	helix-turn-helix transcriptional regulator	NA
UHGV-0172344_58	eggNOG-mapper	1201292.DR75_1541	Helix-turn-helix XRE-family like proteins	NA
UHGV-0172344_58	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0172344_58	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0172344_58	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0172344_60	Structural annotation	PF21441, TIGR04176, COG1846	NA	NA
UHGV-0172344_61	KOfam	K19449	sinR; XRE family transcriptional regulator, master regulator for biofilm formation	NA
UHGV-0172344_61	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0172344_61	UniRef90	UniRef90_A0A8G0M6K7	Helix-turn-helix domain-containing protein	NA
UHGV-0172344_61	eggNOG-mapper	445335.CBN_1315	Transcriptional regulator	NA
UHGV-0172344_61	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0172344_61	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0172344_61	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0172344_64	UniRef90	UniRef90_A0A845QLX6	LYZ2 domain-containing protein	NA
UHGV-0172344_64	eggNOG-mapper	717605.Theco_1666	Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase	NA
UHGV-0172344_64	Pfam	PF01832	Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase	Glucosaminidase
UHGV-0172344_64	COG	COG3103	NA	NA
UHGV-0172344_64	Structural annotation	PF01832, NF038016, COG1705	NA	NA
UHGV-0172344_66	PHROG	phrog_4433	NA	unknown function
UHGV-0172344_66	eggNOG-mapper	445970.ALIPUT_01221	DNA-templated transcription, initiation	NA
UHGV-0172344_66	COG	COG1595	DNA-directed RNA polymerase specialized sigma subunit, sigma24 family	NA