UHGV-0172346

Genome information

Genome length 38,411 bps

CDS count 67

Completeness 100.00% (complete)

geNomad score 0.9822

Prediction confidence Confident

Genome information
Genome ID	UHGV-0172346
vOTU ID	vOTU-002843
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_585708
BioSample	NA
Country	Madagascar
Virus prediction confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	18
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9822
Virus hallmark genes (geNomad)	6
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	27.2
Jumbo phage	No

Genome content
Genome length	38,411 bps
GC content	54.17%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	67
CDS density	93.97%
Average CDS length	543.40 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0172346_2	PHROG	phrog_15594	NA	unknown function
UHGV-0172346_2	Structural annotation	PF16640, TIGR04488	NA	NA
UHGV-0172346_3	PHROG	phrog_918	NA	unknown function
UHGV-0172346_3	UniRef90	UniRef90_UPI000E468F85	NA	NA
UHGV-0172346_3	eggNOG-mapper	1140001.I571_01827	NA	NA
UHGV-0172346_3	Pfam	PF19791	NA	DUF6275
UHGV-0172346_3	Structural annotation	PF19791	NA	NA
UHGV-0172346_4	PHROG	phrog_881	holin	lysis
UHGV-0172346_4	UniRef90	UniRef90_A0A4Q7P349	Dp-1 family holin	NA
UHGV-0172346_4	eggNOG-mapper	742740.HMPREF9474_02251	Putative phage holin Dp-1	NA
UHGV-0172346_4	Pfam	PF16938	Putative phage holin Dp-1	Phage_holin_Dp1
UHGV-0172346_4	Structural annotation	PF16938	NA	NA
UHGV-0172346_5	PHROG	phrog_1863	NA	unknown function
UHGV-0172346_5	eggNOG-mapper	1235797.C816_02840	NA	NA
UHGV-0172346_6	PHROG	phrog_372	tail protein	tail
UHGV-0172346_6	UniRef90	UniRef90_R7FHU8	Tail protein	NA
UHGV-0172346_6	eggNOG-mapper	1211844.CBLM010000023_gene977	NA	NA
UHGV-0172346_6	Pfam	PF05895	NA	DUF859
UHGV-0172346_6	Structural annotation	PF05895, MF_00791, NF010681, COG2967	NA	NA
UHGV-0172346_7	PHROG	phrog_6616	tail protein	tail
UHGV-0172346_7	UniRef90	UniRef90_A0A3D3U8S7	Peptidase S74 domain-containing protein	NA
UHGV-0172346_7	eggNOG-mapper	33035.JPJF01000043_gene1002	NA	NA
UHGV-0172346_8	PHROG	phrog_1194	NA	unknown function
UHGV-0172346_8	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0172346_9	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0172346_9	eggNOG-mapper	1232453.BAIF02000058_gene1637	phage tail tape measure protein	NA
UHGV-0172346_9	COG	COG5412	Phage-related protein	NA
UHGV-0172346_10	PHROG	phrog_706	NA	unknown function
UHGV-0172346_10	UniRef90	UniRef90_A0A173TZF2	Bacteriophage Gp15 protein	NA
UHGV-0172346_10	eggNOG-mapper	411459.RUMOBE_01383	Bacteriophage Gp15 protein	NA
UHGV-0172346_10	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0172346_10	Structural annotation	PF06854	NA	NA
UHGV-0172346_11	PHROG	phrog_11299	NA	unknown function
UHGV-0172346_11	eggNOG-mapper	411459.RUMOBE_01382	NA	NA
UHGV-0172346_11	Structural annotation	PF10666	NA	NA
UHGV-0172346_12	PHROG	phrog_3099	NA	unknown function
UHGV-0172346_12	eggNOG-mapper	1304866.K413DRAFT_3043	NA	NA
UHGV-0172346_12	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0172346_13	PHROG	phrog_3266	tail completion	connector
UHGV-0172346_13	eggNOG-mapper	693746.OBV_18140	NA	NA
UHGV-0172346_13	Structural annotation	PF20765	NA	NA
UHGV-0172346_14	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0172346_14	UniRef90	UniRef90_UPI001F06267A	minor capsid protein	NA
UHGV-0172346_14	eggNOG-mapper	33035.JPJF01000106_gene3128	NA	NA
UHGV-0172346_14	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0172346_14	Structural annotation	PF11114	NA	NA
UHGV-0172346_15	Structural annotation	PF20536, MF_01370, TIGR02126	NA	NA
UHGV-0172346_16	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0172346_16	eggNOG-mapper	693746.OBV_18110	NA	NA
UHGV-0172346_18	PHROG	phrog_422	major head protein	head and packaging
UHGV-0172346_18	eggNOG-mapper	693746.OBV_18090	NA	NA
UHGV-0172346_18	Structural annotation	PF05065, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0172346_19	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0172346_19	UniRef90	UniRef90_UPI00164D9F94	phage scaffolding protein	NA
UHGV-0172346_19	eggNOG-mapper	693746.OBV_18080	COG NOG36366 non supervised orthologous group	NA
UHGV-0172346_19	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0172346_19	Structural annotation	PF06810	NA	NA
UHGV-0172346_21	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0172346_21	UniRef90	UniRef90_UPI0006814CA4	phage minor capsid protein	NA
UHGV-0172346_21	eggNOG-mapper	693746.OBV_18050	Phage minor capsid protein 2	NA
UHGV-0172346_21	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0172346_21	COG	COG2369	NA	NA
UHGV-0172346_21	Structural annotation	PF06152, TIGR01641, COG2369	NA	NA
UHGV-0172346_22	PHROG	phrog_533	portal protein	head and packaging
UHGV-0172346_22	UniRef90	UniRef90_UPI000680A1DB	phage portal protein	NA
UHGV-0172346_22	eggNOG-mapper	693746.OBV_18040	NA	NA
UHGV-0172346_22	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0172346_24	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0172346_24	PHROG	phrog_10250	NA	unknown function
UHGV-0172346_24	UniRef90	UniRef90_A0A3D3Y0N9	PBSX family phage terminase large subunit	NA
UHGV-0172346_24	eggNOG-mapper	1226322.HMPREF1545_00043	Phage terminase large subunit	NA
UHGV-0172346_24	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0172346_24	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0172346_24	COG	COG1783	Phage terminase large subunit	NA
UHGV-0172346_24	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0172346_25	UniRef90	UniRef90_UPI0009523D83	helix-turn-helix domain containing protein	NA
UHGV-0172346_25	eggNOG-mapper	1226322.HMPREF1545_00042	NA	NA
UHGV-0172346_25	Structural annotation	PF13542	NA	NA
UHGV-0172346_26	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0172346_26	UniRef90	UniRef90_UPI001C10AB33	NA	NA
UHGV-0172346_26	eggNOG-mapper	580331.Thit_1400	NA	NA
UHGV-0172346_26	Structural annotation	PF07374, TIGR01636	NA	NA
UHGV-0172346_34	PHROG	phrog_9572	sulfatase-modifying factor enzyme	other
UHGV-0172346_34	eggNOG-mapper	742735.HMPREF9467_00919	NA	NA
UHGV-0172346_35	PHROG	phrog_355	nucleoside 2-deoxyribosyltransferase	DNA, RNA and nucleotide metabolism
UHGV-0172346_35	UniRef90	UniRef90_A0A415G5B2	NA	NA
UHGV-0172346_35	eggNOG-mapper	397290.C810_05229	NA	NA
UHGV-0172346_35	Pfam	PF14359	NA	DUF4406
UHGV-0172346_35	Structural annotation	PF14359, MF_03036, TIGR03646, COG3613	NA	NA
UHGV-0172346_37	PHROG	phrog_5781	NA	unknown function
UHGV-0172346_37	UniRef90	UniRef90_A0A2V2FSM6	Nucleoside 2-deoxyribosyltransferase	NA
UHGV-0172346_37	eggNOG-mapper	573061.Clocel_3558	NA	NA
UHGV-0172346_37	Pfam	PF14359	NA	DUF4406
UHGV-0172346_37	COG	COG3613	Nucleoside 2-deoxyribosyltransferase	NA
UHGV-0172346_37	Structural annotation	PF14359, MF_03036, TIGR02133, COG3613	NA	NA
UHGV-0172346_39	KOfam	K00390	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	NA
UHGV-0172346_39	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0172346_39	UniRef90	UniRef90_UPI001D087498	phosphoadenosine phosphosulfate reductase family protein	NA
UHGV-0172346_39	eggNOG-mapper	1408437.JNJN01000032_gene2312	Phosphoadenosine phosphosulfate reductase	NA
UHGV-0172346_39	Pfam	PF01507	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
UHGV-0172346_39	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0172346_39	Structural annotation	PF01507, MF_00063, NF010369, COG0175	NA	NA
UHGV-0172346_40	PHROG	phrog_4433	NA	unknown function
UHGV-0172346_40	eggNOG-mapper	665950.HMPREF1025_01373	regulation of DNA-templated transcription, elongation	NA
UHGV-0172346_40	COG	COG5164	Transcription elongation factor SPT5	NA
UHGV-0172346_40	Structural annotation	NF007410	NA	NA
UHGV-0172346_41	UniRef90	UniRef90_UPI001C01A488	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-0172346_41	eggNOG-mapper	561177.ANHYDRO_01396	Endodeoxyribonuclease RusA	NA
UHGV-0172346_41	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0172346_41	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0172346_42	PHROG	phrog_1408	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0172346_42	eggNOG-mapper	742740.HMPREF9474_03117	NA	NA
UHGV-0172346_42	Structural annotation	PF01978, NF000243, COG0735	NA	NA
UHGV-0172346_43	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0172346_43	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0172346_43	UniRef90	UniRef90_A0A1C5QDM6	Single-stranded DNA-binding protein	NA
UHGV-0172346_43	eggNOG-mapper	1226322.HMPREF1545_04080	Single-strand binding protein family	NA
UHGV-0172346_43	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0172346_43	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0172346_43	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0172346_43	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0172346_43	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0172346_44	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0172346_44	UniRef90	UniRef90_A0A2Z4Q9W9	NinB	NA
UHGV-0172346_44	eggNOG-mapper	445972.ANACOL_01825	NA	NA
UHGV-0172346_44	Structural annotation	PF05772, NF007281	NA	NA
UHGV-0172346_45	PHROG	phrog_27776	NA	unknown function
UHGV-0172346_45	UniRef90	UniRef90_A0A6H1ZE89	Putative tail protein	NA
UHGV-0172346_45	eggNOG-mapper	1382356.JQMP01000004_gene51	NA	NA
UHGV-0172346_45	Structural annotation	PF04098, TIGR00607, COG4712	NA	NA
UHGV-0172346_49	Pfam	PF04448	NA	DUF551
UHGV-0172346_51	UniRef90	UniRef90_UPI000F0633F9	DNA-binding protein	NA
UHGV-0172346_51	eggNOG-mapper	1235835.C814_03153	NA	NA
UHGV-0172346_51	Structural annotation	PF12728, TIGR01764, COG3311	NA	NA
UHGV-0172346_56	UniRef90	UniRef90_UPI0018C81604	helix-turn-helix domain-containing protein	NA
UHGV-0172346_56	eggNOG-mapper	718252.FP2_06860	NA	NA
UHGV-0172346_56	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0172346_56	Structural annotation	PF21291, NF041951, COG1476	NA	NA
UHGV-0172346_57	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0172346_57	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0172346_57	UniRef90	UniRef90_UPI00047CA4D8	helix-turn-helix domain-containing protein	NA
UHGV-0172346_57	eggNOG-mapper	1262914.BN533_01956	Helix-turn-helix XRE-family like proteins	NA
UHGV-0172346_57	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0172346_57	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0172346_57	Structural annotation	PF13560, MF_00535, NF007257, COG1396	NA	NA
UHGV-0172346_58	KOfam	K07449	K07449; similar to archaeal holliday junction resolvase and Mrr protein	NA
UHGV-0172346_58	PHROG	phrog_13700	FtsK/SpoIIIE-like protein	moron, auxiliary metabolic gene and host takeover
UHGV-0172346_58	UniRef90	UniRef90_A0A564WRV4	DNA translocase FtsK	NA
UHGV-0172346_58	eggNOG-mapper	689781.AUJX01000015_gene1540	restriction endonuclease	NA
UHGV-0172346_58	PADLOC	ZorD1_00005	SWI2/SNF2 helicase, Mrr-like nuclease	Zorya
UHGV-0172346_58	Pfam	PF04471	Restriction endonuclease	Mrr_cat
UHGV-0172346_58	Pfam	PF09397	Ftsk gamma domain	FtsK_gamma
UHGV-0172346_58	COG	COG1787	Endonuclease, HJR/Mrr/RecB family	NA
UHGV-0172346_60	Pfam	PF13384	Homeodomain-like domain	HTH_23
UHGV-0172346_60	Structural annotation	PF13560, MF_00535, TIGR03070, COG1396	NA	NA
UHGV-0172346_61	KOfam	K14059	int; integrase	NA
UHGV-0172346_61	PHROG	phrog_1	integrase	integration and excision
UHGV-0172346_61	UniRef90	UniRef90_A0A810Q0Y2	Tyr recombinase domain-containing protein	NA
UHGV-0172346_61	eggNOG-mapper	693746.OBV_43340	Belongs to the 'phage' integrase family	NA
UHGV-0172346_61	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0172346_61	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0172346_61	Structural annotation	PF00589, PF13495, MF_02055, TIGR02225, COG4974	NA	NA
UHGV-0172346_65	Structural annotation	PF16509, MF_00245, NF001066, COG2739	NA	NA
UHGV-0172346_66	PHROG	phrog_21357	endolysin	lysis
UHGV-0172346_66	UniRef90	UniRef90_A0A4D7AVW6	CHAP domain-containing protein	NA
UHGV-0172346_66	eggNOG-mapper	97139.C824_00684	lysozyme activity	NA
UHGV-0172346_66	Pfam	PF05257	CHAP domain	CHAP
UHGV-0172346_66	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-0172346_66	COG	COG1388	LysM repeat	NA
UHGV-0172346_66	Structural annotation	PF01471, PF10030, TIGR02594, NF038080, COG3409, COG3942	NA	NA
UHGV-0172346_67	KOfam	K17256	IGFALS, ALS; insulin-like growth factor-binding protein complex acid labile subunit	NA
UHGV-0172346_67	PHROG	phrog_35892	NA	unknown function
UHGV-0172346_67	Pfam	PF13306	BspA type Leucine rich repeat region (6 copies)	LRR_5
UHGV-0172346_67	Pfam	PF13855	Leucine rich repeat	LRR_8
UHGV-0172346_67	Structural annotation	PF13306, NF041351	NA	NA