UHGV-0172347

Genome information

Genome length 45,130 bps

CDS count 75

Completeness 87.44% (medium-quality)

geNomad score 0.9784

Prediction confidence Confident

Genome information
Genome ID	UHGV-0172347
vOTU ID	vOTU-028602
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_585709
BioSample	NA
Country	Madagascar
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	87.44% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	15
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9784
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	14.48
Jumbo phage	No

Genome content
Genome length	45,130 bps
GC content	46.29%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	75
CDS density	88.00%
Average CDS length	532.48 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0172347_1	PHROG	phrog_270	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0172347_1	eggNOG-mapper	1423724.BAMM01000020_gene1808	NA	NA
UHGV-0172347_1	COG	COG3756	NA	NA
UHGV-0172347_2	PHROG	phrog_9804	NA	unknown function
UHGV-0172347_2	UniRef90	UniRef90_R6LQQ5	Inhibitor_G39P domain-containing protein	NA
UHGV-0172347_2	eggNOG-mapper	1499683.CCFF01000013_gene503	Loader and inhibitor of phage G40P	NA
UHGV-0172347_2	Pfam	PF11417	Loader and inhibitor of phage G40P	Inhibitor_G39P
UHGV-0172347_2	Structural annotation	PF11417	NA	NA
UHGV-0172347_6	KOfam	K01520	dut, DUT; dUTP pyrophosphatase [EC:3.6.1.23]	NA
UHGV-0172347_6	PHROG	phrog_135	dUTPase	DNA, RNA and nucleotide metabolism
UHGV-0172347_6	UniRef90	UniRef90_R6ILQ3	Deoxyuridine 5'-triphosphate nucleotidohydrolase	NA
UHGV-0172347_6	eggNOG-mapper	1282887.AUJG01000016_gene1113	NA	NA
UHGV-0172347_6	Pfam	PF00692	dUTPase	dUTPase
UHGV-0172347_6	NCBIFam	TIGR00576.1	dUTP diphosphatase	NA
UHGV-0172347_6	COG	COG0756	dUTP pyrophosphatase (dUTPase)	NA
UHGV-0172347_6	Structural annotation	PF00692, MF_00116, TIGR00576, COG0756	NA	NA
UHGV-0172347_7	UniRef90	UniRef90_A0A098GES5	Putative phage associated protein	NA
UHGV-0172347_7	Structural annotation	PF01423, MF_00257, NF001963, COG1958	NA	NA
UHGV-0172347_9	Structural annotation	PF13969	NA	NA
UHGV-0172347_10	Structural annotation	PF18129, NF000331	NA	NA
UHGV-0172347_11	PHROG	phrog_757	DNA methyltransferase	other
UHGV-0172347_11	UniRef90	UniRef90_A0A417JTT5	DNA cytosine methyltransferase	NA
UHGV-0172347_11	eggNOG-mapper	1095750.HMPREF9970_0173	DNA (cytosine-5-)-methyltransferase activity	NA
UHGV-0172347_11	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0172347_11	Structural annotation	PF00145, MF_01872, TIGR00675, COG0270	NA	NA
UHGV-0172347_13	Structural annotation	PF06289, COG1582	NA	NA
UHGV-0172347_15	PHROG	phrog_22543	NA	unknown function
UHGV-0172347_22	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0172347_22	PHROG	phrog_4632	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0172347_22	UniRef90	UniRef90_A0A1V5ZUM0	Endodeoxyribonuclease RusA	NA
UHGV-0172347_22	eggNOG-mapper	556263.FSEG_00477	NA	NA
UHGV-0172347_22	Structural annotation	PF19595, NF007305, COG4570	NA	NA
UHGV-0172347_23	PHROG	phrog_374	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0172347_23	UniRef90	UniRef90_A0A7W0C2S3	Putative transcriptional regulator	NA
UHGV-0172347_23	eggNOG-mapper	357276.EL88_11255	NA	NA
UHGV-0172347_23	Structural annotation	PF17375	NA	NA
UHGV-0172347_24	PHROG	phrog_474	phosphofructokinase	other
UHGV-0172347_24	UniRef90	UniRef90_UPI00195F5FF7	NA	NA
UHGV-0172347_24	eggNOG-mapper	1095750.HMPREF9970_1026	NA	NA
UHGV-0172347_24	Pfam	PF19905	NA	DUF6378
UHGV-0172347_24	Structural annotation	PF19905	NA	NA
UHGV-0172347_26	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0172347_26	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0172347_26	UniRef90	UniRef90_A0A7C6GL00	Single-stranded DNA-binding protein	NA
UHGV-0172347_26	eggNOG-mapper	1232443.BAIA02000073_gene513	Single-strand binding protein family	NA
UHGV-0172347_26	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0172347_26	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0172347_26	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0172347_26	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0172347_26	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0172347_29	Structural annotation	PF20063, NF033787	NA	NA
UHGV-0172347_30	PHROG	phrog_4402	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0172347_30	UniRef90	UniRef90_A0A3A9E5A5	RepB family plasmid replication initiator protein	NA
UHGV-0172347_30	eggNOG-mapper	1395513.P343_18240	Protein involved in initiation of plasmid replication	NA
UHGV-0172347_30	Pfam	PF01051	Initiator Replication protein, WH1	Rep3_N
UHGV-0172347_30	Pfam	PF21205	Initiator Rep protein, WH2	Rep3_C
UHGV-0172347_30	COG	COG5527	Protein involved in initiation of plasmid replication	NA
UHGV-0172347_30	Structural annotation	PF01051, PF21205, NF038290, COG5527	NA	NA
UHGV-0172347_31	eggNOG-mapper	1378168.N510_03079	NA	NA
UHGV-0172347_33	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0172347_36	eggNOG-mapper	1121334.KB911071_gene1966	NA	NA
UHGV-0172347_38	KOfam	K19304	mepM; murein DD-endopeptidase [EC:3.4.24.-]	NA
UHGV-0172347_38	PHROG	phrog_7767	metallo-endopeptidase	other
UHGV-0172347_38	UniRef90	UniRef90_R6RKB1	Lyzozyme M1 (1 4-beta-N-acetylmuramidase)	NA
UHGV-0172347_38	eggNOG-mapper	1158601.I585_02846	Peptidase family M23	NA
UHGV-0172347_38	Pfam	PF01551	Peptidase family M23	Peptidase_M23
UHGV-0172347_38	Pfam	PF09992	Phosphodiester glycosidase	NAGPA
UHGV-0172347_38	COG	COG0739	Murein DD-endopeptidase MepM and murein hydrolase activator NlpD, contains LysM domain	NA
UHGV-0172347_38	Structural annotation	PF01551, PF09992, NF040883, COG0739, COG3698	NA	NA
UHGV-0172347_39	PHROG	phrog_4105	NA	unknown function
UHGV-0172347_39	eggNOG-mapper	397288.C806_00056	NA	NA
UHGV-0172347_41	PHROG	phrog_13589	NA	unknown function
UHGV-0172347_41	eggNOG-mapper	411471.SUBVAR_06929	ATPase involved in DNA repair	NA
UHGV-0172347_41	COG	COG0419	DNA repair exonuclease SbcCD ATPase subunit	NA
UHGV-0172347_42	Structural annotation	PF10651	NA	NA
UHGV-0172347_44	PHROG	phrog_6616	tail protein	tail
UHGV-0172347_44	eggNOG-mapper	1226322.HMPREF1545_00064	NA	NA
UHGV-0172347_45	PHROG	phrog_1194	NA	unknown function
UHGV-0172347_45	eggNOG-mapper	1122919.KB905559_gene1345	NA	NA
UHGV-0172347_45	Pfam	PF20458	NA	DUF6711
UHGV-0172347_45	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0172347_46	PHROG	phrog_37543	NA	unknown function
UHGV-0172347_46	eggNOG-mapper	1123263.AUKY01000015_gene1620	Phage tail tape measure protein TP901	NA
UHGV-0172347_46	COG	COG5280	Phage-related minor tail protein	NA
UHGV-0172347_47	eggNOG-mapper	1121333.JMLH01000047_gene1011	NA	NA
UHGV-0172347_48	eggNOG-mapper	1211844.CBLM010000023_gene988	NA	NA
UHGV-0172347_48	Pfam	PF16478	NA	DUF5055
UHGV-0172347_48	Structural annotation	PF16478	NA	NA
UHGV-0172347_49	UniRef90	UniRef90_UPI001A9B3C90	phage tail protein	NA
UHGV-0172347_49	Structural annotation	PF16463, TIGR02241, COG5437	NA	NA
UHGV-0172347_50	eggNOG-mapper	469596.HMPREF9488_01309	NA	NA
UHGV-0172347_50	Structural annotation	PF06141, TIGR02367, COG3167	NA	NA
UHGV-0172347_52	eggNOG-mapper	1298920.KI911353_gene2656	NA	NA
UHGV-0172347_53	UniRef90	UniRef90_UPI001D07B1DB	phage head-tail connector protein	NA
UHGV-0172347_53	eggNOG-mapper	1298920.KI911353_gene2658	NA	NA
UHGV-0172347_53	Structural annotation	TIGR01560	NA	NA
UHGV-0172347_55	PHROG	phrog_29	major head protein	head and packaging
UHGV-0172347_55	UniRef90	UniRef90_A0A2Z4QBB4	Major capsid protein E	NA
UHGV-0172347_55	eggNOG-mapper	1262449.CP6013_2085	Phage major capsid protein E	NA
UHGV-0172347_55	Pfam	PF03864	Phage major capsid protein E	Phage_cap_E
UHGV-0172347_55	Structural annotation	PF03864, MF_04133, NF041162, COG4653	NA	NA
UHGV-0172347_58	PHROG	phrog_115	minor head protein	head and packaging
UHGV-0172347_58	eggNOG-mapper	278197.PEPE_0506	Phage Mu protein F like protein	NA
UHGV-0172347_58	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0172347_58	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-0172347_58	Structural annotation	PF04233, TIGR01641	NA	NA
UHGV-0172347_59	PHROG	phrog_64	portal protein	head and packaging
UHGV-0172347_59	UniRef90	UniRef90_A0A845RCM8	Phage portal protein	NA
UHGV-0172347_59	eggNOG-mapper	1123263.AUKY01000015_gene1609	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0172347_59	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0172347_59	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0172347_61	PHROG	phrog_38	terminase large subunit	head and packaging
UHGV-0172347_61	UniRef90	UniRef90_A0A843GZU6	Phage terminase large subunit	NA
UHGV-0172347_61	eggNOG-mapper	476272.RUMHYD_01940	TIGRFAM Phage	NA
UHGV-0172347_61	NCBIFam	TIGR01630.1	phage terminase large subunit	NA
UHGV-0172347_61	COG	COG5410	NA	NA
UHGV-0172347_61	Structural annotation	PF17289, PF02562, MF_04147, NF033889, COG5362, COG5410	NA	NA
UHGV-0172347_62	UniRef90	UniRef90_A0A521SZN7	Ribonuclease H	NA
UHGV-0172347_62	eggNOG-mapper	1123388.AQWU01000067_gene621	Endonuclease that specifically degrades the RNA of RNA- DNA hybrids	NA
UHGV-0172347_62	COG	COG0328	Ribonuclease HI	NA
UHGV-0172347_63	Pfam	PF16677	DNA-packaging protein gp3	GP3_package
UHGV-0172347_64	PHROG	phrog_13890	NA	unknown function
UHGV-0172347_64	UniRef90	UniRef90_UPI001D0A85B3	NA	NA
UHGV-0172347_64	Structural annotation	COG4226	NA	NA
UHGV-0172347_66	PHROG	phrog_10415	NA	unknown function
UHGV-0172347_66	UniRef90	UniRef90_A0A6H1ZT64	LPD29 domain-containing protein	NA
UHGV-0172347_66	COG	COG2214	Curved DNA-binding protein CbpA, contains a DnaJ-like domain	NA
UHGV-0172347_68	Structural annotation	PF19129, NF007348, COG5569	NA	NA
UHGV-0172347_73	PHROG	phrog_25567	NA	unknown function
UHGV-0172347_73	UniRef90	UniRef90_A0A0K9N6V9	Toxin-antitoxin system, antitoxin component, Xre family	NA
UHGV-0172347_73	eggNOG-mapper	888727.HMPREF9092_0491	Helix-turn-helix	NA
UHGV-0172347_73	COG	COG2944	DNA-binding transcriptional regulator YiaG, XRE-type HTH domain	NA
UHGV-0172347_73	Structural annotation	PF01381, NF040522, COG1476	NA	NA
UHGV-0172347_75	UniRef90	UniRef90_A0A1Y3X9H7	Peptidase	NA
UHGV-0172347_75	eggNOG-mapper	411467.BACCAP_02394	Peptidase propeptide and YPEB domain	NA
UHGV-0172347_75	Pfam	PF07833	Copper amine oxidase N-terminal domain	Cu_amine_oxidN1
UHGV-0172347_75	COG	COG3212	PepSY domain containing protein, regulator of zincin peptidase activity	NA
UHGV-0172347_75	Structural annotation	PF07705, COG5633	NA	NA