UHGV-0172353

Genome information

Genome length 43,037 bps

CDS count 70

Completeness 100.00% (complete)

geNomad score 0.9712

Prediction confidence Confident

Genome information
Genome ID	UHGV-0172353
vOTU ID	vOTU-046442
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_591544
BioSample	SAMN09781791
Country	Madagascar
Virus prediction confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	8
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9712
Virus hallmark genes (geNomad)	6
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	33.75
Jumbo phage	No

Genome content
Genome length	43,037 bps
GC content	48.66%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	70
CDS density	90.13%
Average CDS length	556.20 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0172353_2	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0172353_2	PHROG	phrog_63	anti-repressor Ant	transcription regulation
UHGV-0172353_2	UniRef90	UniRef90_UPI001C0F4BC0	phage antirepressor KilAC domain-containing protein	NA
UHGV-0172353_2	eggNOG-mapper	386415.NT01CX_2199	Phage antirepressor protein	NA
UHGV-0172353_2	Pfam	PF08346	AntA/AntB antirepressor	AntA
UHGV-0172353_2	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0172353_2	COG	COG3561	Phage anti-repressor protein Ant	NA
UHGV-0172353_2	Structural annotation	PF03374, PF08346, TIGR02681, COG3645, COG3561	NA	NA
UHGV-0172353_6	KOfam	K14059	int; integrase	NA
UHGV-0172353_6	PHROG	phrog_1	integrase	integration and excision
UHGV-0172353_6	UniRef90	UniRef90_A0A367GI93	Tyr recombinase domain-containing protein	NA
UHGV-0172353_6	eggNOG-mapper	1507.HMPREF0262_00307	Phage integrase family	NA
UHGV-0172353_6	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0172353_6	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0172353_6	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0172353_6	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-0172353_7	KOfam	K15773	hipB; HTH-type transcriptional regulator / antitoxin HipB	NA
UHGV-0172353_7	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0172353_7	COG	COG3620	Predicted transcriptional regulator, contains an XRE-type HTH domain (archaeal members contain CBS pair)	NA
UHGV-0172353_7	Structural annotation	PF13560, MF_00535, NF041951, COG1476	NA	NA
UHGV-0172353_9	KOfam	K06546	CD164, MGC24; CD164 antigen	NA
UHGV-0172353_9	eggNOG-mapper	1410653.JHVC01000032_gene1036	domain protein	NA
UHGV-0172353_9	COG	COG2333	DNA uptake channel protein ComEC C-terminal domain, metallo-beta-lactamase superfamily	NA
UHGV-0172353_10	eggNOG-mapper	428125.CLOLEP_02738	SMART helix-turn-helix domain protein	NA
UHGV-0172353_10	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0172353_10	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0172353_10	Structural annotation	PF12844, MF_00535, NF041951, COG1396	NA	NA
UHGV-0172353_11	UniRef90	UniRef90_UPI000CF638BB	XRE family transcriptional regulator	NA
UHGV-0172353_11	eggNOG-mapper	742738.HMPREF9460_02486	NA	NA
UHGV-0172353_11	Structural annotation	PF13443, NF000090, COG1813	NA	NA
UHGV-0172353_13	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0172353_13	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-0172353_13	UniRef90	UniRef90_A0A252F729	Bro-N domain-containing protein	NA
UHGV-0172353_13	eggNOG-mapper	1122146.AUHP01000010_gene1023	BRO family, N-terminal domain	NA
UHGV-0172353_13	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0172353_13	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0172353_13	COG	COG3617	Prophage antirepressor	NA
UHGV-0172353_13	Structural annotation	PF03374, PF02498, TIGR02681, COG3645	NA	NA
UHGV-0172353_14	PHROG	phrog_5070	NA	unknown function
UHGV-0172353_14	UniRef90	UniRef90_UPI00189ACE43	polymer-forming cytoskeletal protein	NA
UHGV-0172353_14	eggNOG-mapper	411470.RUMGNA_02189	Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3-hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell	NA
UHGV-0172353_14	Pfam	PF18836	YdcK Beta solenoid repeat	B_solenoid_ydck
UHGV-0172353_14	COG	COG1044	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase	NA
UHGV-0172353_14	Structural annotation	NF040481	NA	NA
UHGV-0172353_19	PHROG	phrog_659	Sak-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0172353_19	UniRef90	UniRef90_A0A843HUJ5	NA	NA
UHGV-0172353_19	eggNOG-mapper	1507.HMPREF0262_00431	NA	NA
UHGV-0172353_19	Pfam	PF06378	NA	DUF1071
UHGV-0172353_19	Structural annotation	PF06378, COG4712	NA	NA
UHGV-0172353_20	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0172353_20	UniRef90	UniRef90_A0A8D9PDS2	NinB protein	NA
UHGV-0172353_20	eggNOG-mapper	1304866.K413DRAFT_1197	NA	NA
UHGV-0172353_20	Structural annotation	PF05772	NA	NA
UHGV-0172353_21	PHROG	phrog_7566	NA	unknown function
UHGV-0172353_21	eggNOG-mapper	693746.OBV_24070	NA	NA
UHGV-0172353_23	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0172353_23	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0172353_23	UniRef90	UniRef90_A0A2A7ALU9	Single-stranded DNA-binding protein	NA
UHGV-0172353_23	eggNOG-mapper	748224.HMPREF9436_00638	Single-stranded DNA-binding protein	NA
UHGV-0172353_23	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0172353_23	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0172353_23	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0172353_23	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0172353_23	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0172353_27	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-0172353_27	PHROG	phrog_1163	NA	unknown function
UHGV-0172353_27	UniRef90	UniRef90_UPI0015C5F92B	conserved phage C-terminal domain-containing protein	NA
UHGV-0172353_27	eggNOG-mapper	457412.RSAG_04664	Phage replisome organizer, N-terminal domain protein	NA
UHGV-0172353_27	Pfam	PF09681	N-terminal phage replisome organiser (Phage_rep_org_N)	Phage_rep_org_N
UHGV-0172353_27	Pfam	PF09524	Conserved phage C-terminus (Phg_2220_C)	Phg_2220_C
UHGV-0172353_27	NCBIFam	TIGR02220.1	phage conserved hypothetical protein, C-terminal domain	NA
UHGV-0172353_27	Structural annotation	PF09681, TIGR01714, COG0640	NA	NA
UHGV-0172353_28	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-0172353_28	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0172353_28	UniRef90	UniRef90_A0A3A5TME7	AAA family ATPase	NA
UHGV-0172353_28	eggNOG-mapper	428125.CLOLEP_03477	NA	NA
UHGV-0172353_28	Pfam	PF01695	IstB-like ATP binding protein	IstB_IS21
UHGV-0172353_28	NCBIFam	NF005992.0	hypothetical protein	NA
UHGV-0172353_28	COG	COG1484	DNA replication protein DnaC	NA
UHGV-0172353_28	Structural annotation	PF01695, MF_01919, NF005992, COG1484	NA	NA
UHGV-0172353_30	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-0172353_30	PHROG	phrog_67	DNA methyltransferase	other
UHGV-0172353_30	UniRef90	UniRef90_A0A1C6E5W1	Methyltransferase	NA
UHGV-0172353_30	eggNOG-mapper	749222.Nitsa_1817	Belongs to the N(4) N(6)-methyltransferase family	NA
UHGV-0172353_30	PADLOC	MTase_II_00157	Type II methyltransferase	RM
UHGV-0172353_30	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0172353_30	COG	COG0863	DNA modification methylase	NA
UHGV-0172353_30	Structural annotation	PF01555, MF_01872, NF010253, COG0863	NA	NA
UHGV-0172353_32	PHROG	phrog_190	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0172353_32	UniRef90	UniRef90_UPI00164AE2A5	NA	NA
UHGV-0172353_32	eggNOG-mapper	563031.HMPREF0666_01122	NA	NA
UHGV-0172353_32	Pfam	PF06356	NA	DUF1064
UHGV-0172353_32	Structural annotation	PF06356	NA	NA
UHGV-0172353_34	PHROG	phrog_3136	NA	unknown function
UHGV-0172353_34	UniRef90	UniRef90_A0A3D0HBD2	ASCH domain-containing protein	NA
UHGV-0172353_34	eggNOG-mapper	97139.C824_00742	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome	NA
UHGV-0172353_34	COG	COG4933	Predicted transcriptional regulator, contains an HTH and PUA-like domains	NA
UHGV-0172353_34	Structural annotation	PF04266, MF_00684, NF008917, COG4933	NA	NA
UHGV-0172353_35	PHROG	phrog_2245	nucleoside triphosphate pyrophosphohydrolase	other
UHGV-0172353_35	Structural annotation	PF02888	NA	NA
UHGV-0172353_36	PHROG	phrog_599	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
UHGV-0172353_36	UniRef90	UniRef90_R6QWY1	28	NA
UHGV-0172353_36	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-0172353_36	dbAPIS	APIS033	Lar is functionally similar to RaI, is able to alleviate restriction and enhance modification by EcoKI. And the nucleotide sequences of their genes share 47% identity, indicating a common origin.	NA
UHGV-0172353_41	KOfam	K23779	sutR; XRE family transcriptional regulator, regulator of sulfur utilization	NA
UHGV-0172353_41	PHROG	phrog_5823	transcriptional regulator	transcription regulation
UHGV-0172353_41	eggNOG-mapper	742738.HMPREF9460_04059	Helix-turn-helix XRE-family like proteins	NA
UHGV-0172353_41	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0172353_41	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0172353_42	Structural annotation	PF17917	NA	NA
UHGV-0172353_45	PHROG	phrog_15863	NA	unknown function
UHGV-0172353_45	UniRef90	UniRef90_UPI0018766E78	J domain-containing protein	NA
UHGV-0172353_45	eggNOG-mapper	1121342.AUCO01000030_gene2587	DnaJ molecular chaperone homology domain	NA
UHGV-0172353_45	COG	COG2214	Curved DNA-binding protein CbpA, contains a DnaJ-like domain	NA
UHGV-0172353_47	UniRef90	UniRef90_UPI0018758D33	NA	NA
UHGV-0172353_47	Structural annotation	PF03869, NF010256, COG4877	NA	NA
UHGV-0172353_48	eggNOG-mapper	1384065.JAGS01000001_gene2489	NA	NA
UHGV-0172353_48	Structural annotation	PF10723	NA	NA
UHGV-0172353_50	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0172353_50	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0172353_50	UniRef90	UniRef90_UPI001F401ABC	terminase family protein	NA
UHGV-0172353_50	eggNOG-mapper	316274.Haur_0564	NA	NA
UHGV-0172353_50	COG	COG4373	Mu-like prophage FluMu protein gp28	NA
UHGV-0172353_50	Structural annotation	PF03354, PF17289, MF_04146, TIGR01547, COG4373	NA	NA
UHGV-0172353_52	PHROG	phrog_156	portal protein	head and packaging
UHGV-0172353_52	eggNOG-mapper	693746.OBV_23930	NA	NA
UHGV-0172353_52	Structural annotation	PF12236, MF_04120, TIGR01538, COG5518	NA	NA
UHGV-0172353_54	PHROG	phrog_35275	NA	unknown function
UHGV-0172353_54	eggNOG-mapper	1226322.HMPREF1545_03846	NA	NA
UHGV-0172353_55	PHROG	phrog_371	major head protein	head and packaging
UHGV-0172353_55	UniRef90	UniRef90_UPI00164C0E21	Mu-like prophage major head subunit gpT family protein	NA
UHGV-0172353_55	eggNOG-mapper	1226322.HMPREF1545_03848	NA	NA
UHGV-0172353_55	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0172353_57	eggNOG-mapper	693746.OBV_23880	NA	NA
UHGV-0172353_57	Structural annotation	PF20387	NA	NA
UHGV-0172353_58	PHROG	phrog_3287	virion structural protein	head and packaging
UHGV-0172353_58	eggNOG-mapper	665956.HMPREF1032_03917	NA	NA
UHGV-0172353_58	Structural annotation	PF11134, MF_01282, TIGR03300, COG5276	NA	NA
UHGV-0172353_59	eggNOG-mapper	665956.HMPREF1032_03918	prophage protein Bartonella henselae str. Houston-1 gi 49237922 emb CAF27125.1	NA
UHGV-0172353_62	NCBIFam	NF040910.1	CD1375 family protein	NA
UHGV-0172353_62	Structural annotation	NF040910	NA	NA
UHGV-0172353_63	KOfam	K07273	acm; lysozyme	NA
UHGV-0172353_63	PHROG	phrog_291	endolysin	lysis
UHGV-0172353_63	UniRef90	UniRef90_A0A4R1QM33	GH25 family lysozyme M1 (1,4-beta-N-acetylmuramidase)	NA
UHGV-0172353_63	eggNOG-mapper	537013.CLOSTMETH_01756	hydrolase, family 25	NA
UHGV-0172353_63	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0172353_63	COG	COG1388	LysM repeat	NA
UHGV-0172353_63	Structural annotation	PF01183, MF_02227, NF002576, COG3757	NA	NA
UHGV-0172353_64	PHROG	phrog_937	hemolysin	other
UHGV-0172353_64	eggNOG-mapper	1297617.JPJD01000099_gene2176	NA	NA
UHGV-0172353_65	PHROG	phrog_1129	holin	lysis
UHGV-0172353_65	UniRef90	UniRef90_A0A1G9U2I2	Phage holin family Hol44, holin superfamily V	NA
UHGV-0172353_65	eggNOG-mapper	537013.CLOSTMETH_03774	NA	NA
UHGV-0172353_65	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-0172353_65	Structural annotation	PF16079	NA	NA
UHGV-0172353_67	eggNOG-mapper	1408437.JNJN01000060_gene452	heme binding	NA
UHGV-0172353_67	Pfam	PF18812	phage-Barnase-EndoU-ColicinE5/D-RelE like nuclease3	PBECR3
UHGV-0172353_67	COG	COG0503	Adenine/guanine phosphoribosyltransferase or related PRPP-binding protein	NA
UHGV-0172353_68	Structural annotation	PF07638, MF_00674, TIGR02954, COG1846	NA	NA
UHGV-0172353_69	KOfam	K19167	abiQ; protein AbiQ	NA
UHGV-0172353_69	PHROG	phrog_9764	NA	unknown function
UHGV-0172353_69	UniRef90	UniRef90_UPI00051BBB58	type III toxin-antitoxin system ToxN/AbiQ family toxin	NA
UHGV-0172353_69	eggNOG-mapper	1519439.JPJG01000060_gene1906	Toxin ToxN, type III toxin-antitoxin system	NA
UHGV-0172353_69	PADLOC	AbiQ	AbiQ	Abi
UHGV-0172353_69	Pfam	PF13958	Toxin ToxN, type III toxin-antitoxin system	ToxN_toxin