UHGV-0172362

Genome information

Genome length 48,257 bps

CDS count 68

Completeness 59.21% (medium-quality)

geNomad score 0.9723

Prediction confidence Confident

Genome information
Genome ID	UHGV-0172362
vOTU ID	vOTU-028603
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_585244
BioSample	SAMN09781738
Country	Madagascar
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	59.21% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	12
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9723
Virus hallmark genes (geNomad)	3
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	23.66
Jumbo phage	No

Genome content
Genome length	48,257 bps
GC content	53.40%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	68
CDS density	84.27%
Average CDS length	600.13 bps
tRNA count	6
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0172362_2	PHROG	phrog_7028	NA	unknown function
UHGV-0172362_9	PHROG	phrog_18108	NA	unknown function
UHGV-0172362_9	eggNOG-mapper	1193128.A200_07674	NA	NA
UHGV-0172362_9	AcrCatalog	cluster_73909	NA	NA
UHGV-0172362_9	Structural annotation	PF07443	NA	NA
UHGV-0172362_10	UniRef90	UniRef90_A0A415ZLW7	DNA-binding response regulator	NA
UHGV-0172362_10	eggNOG-mapper	1280676.AUJO01000024_gene3264	Plasmid pRiA4b ORF-3-like protein	NA
UHGV-0172362_10	Pfam	PF13542	Helix-turn-helix domain of transposase family ISL3	HTH_Tnp_ISL3
UHGV-0172362_10	Pfam	PF13384	Homeodomain-like domain	HTH_23
UHGV-0172362_10	Structural annotation	PF00196, NF040595, COG2771	NA	NA
UHGV-0172362_11	UniRef90	UniRef90_UPI00047B9036	ribonucleoside-triphosphate reductase	NA
UHGV-0172362_11	eggNOG-mapper	1121333.JMLH01000028_gene1120	NA	NA
UHGV-0172362_11	Pfam	PF13597	Anaerobic ribonucleoside-triphosphate reductase	NRDD
UHGV-0172362_11	COG	COG1328	Anaerobic ribonucleoside-triphosphate reductase	NA
UHGV-0172362_14	PHROG	phrog_229	MazG-like pyrophosphatase	other
UHGV-0172362_14	Pfam	PF03819	MazG nucleotide pyrophosphohydrolase domain	MazG
UHGV-0172362_14	COG	COG1694	NTP pyrophosphatase, house-cleaning of non-canonical NTPs	NA
UHGV-0172362_16	PHROG	phrog_1485	NA	unknown function
UHGV-0172362_16	UniRef90	UniRef90_A0A6B4I5K6	NA	NA
UHGV-0172362_16	eggNOG-mapper	1415774.U728_1099	NA	NA
UHGV-0172362_16	Pfam	PF07659	Nucleotide modification associated domain 1	DUF1599
UHGV-0172362_17	PHROG	phrog_874	NA	unknown function
UHGV-0172362_17	UniRef90	UniRef90_A0A4P6LRJ9	ASCH domain-containing protein	NA
UHGV-0172362_17	eggNOG-mapper	632245.CLP_1629	NA	NA
UHGV-0172362_17	Structural annotation	PF04266, MF_00684, NF003443, COG4405	NA	NA
UHGV-0172362_18	PHROG	phrog_9976	anti-repressor	transcription regulation
UHGV-0172362_18	UniRef90	UniRef90_A0A844J665	Phage repressor protein	NA
UHGV-0172362_18	eggNOG-mapper	634956.Geoth_0745	COG3617 Prophage antirepressor	NA
UHGV-0172362_18	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0172362_18	COG	COG3617	Prophage antirepressor	NA
UHGV-0172362_18	Structural annotation	PF02498, NF008573, COG3617	NA	NA
UHGV-0172362_19	KOfam	K03465	thyX, thy1; thymidylate synthase (FAD) [EC:2.1.1.148]	NA
UHGV-0172362_19	PHROG	phrog_85	thymidylate synthase	DNA, RNA and nucleotide metabolism
UHGV-0172362_19	UniRef90	UniRef90_A0A6G7PXY7	FAD-dependent thymidylate synthase	NA
UHGV-0172362_19	eggNOG-mapper	177439.DP2228	Catalyzes the reductive methylation of 2'-deoxyuridine- 5'-monophosphate (dUMP) to 2'-deoxythymidine-5'-monophosphate (dTMP) while utilizing 5,10-methylenetetrahydrofolate (mTHF) as the methyl donor, and NADPH and FADH(2) as the reductant	NA
UHGV-0172362_19	Pfam	PF02511	Thymidylate synthase complementing protein	Thy1
UHGV-0172362_19	COG	COG1351	Thymidylate synthase ThyX, FAD-dependent family	NA
UHGV-0172362_19	Structural annotation	PF02511, MF_01408, TIGR02170, COG1351	NA	NA
UHGV-0172362_20	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-0172362_20	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0172362_20	UniRef90	UniRef90_A0A8A5CLA1	Replicative DNA helicase	NA
UHGV-0172362_20	eggNOG-mapper	857293.CAAU_1960	Participates in initiation and elongation during chromosome replication	NA
UHGV-0172362_20	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-0172362_20	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0172362_20	NCBIFam	TIGR00665.1	replicative DNA helicase	NA
UHGV-0172362_20	COG	COG0305	Replicative DNA helicase	NA
UHGV-0172362_20	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-0172362_21	PHROG	phrog_6329	NA	unknown function
UHGV-0172362_21	UniRef90	UniRef90_Q3HKY8	Conserved phage protein	NA
UHGV-0172362_21	eggNOG-mapper	521460.Athe_1020	NA	NA
UHGV-0172362_22	KOfam	K04487	iscS, NFS1; cysteine desulfurase [EC:2.8.1.7]	NA
UHGV-0172362_22	PHROG	phrog_12787	NA	unknown function
UHGV-0172362_22	UniRef90	UniRef90_A0A1M6GRE8	Cysteine desulfurase IscS	NA
UHGV-0172362_22	eggNOG-mapper	1304880.JAGB01000002_gene1828	Master enzyme that delivers sulfur to a number of partners involved in Fe-S cluster assembly, tRNA modification or cofactor biosynthesis. Catalyzes the removal of elemental sulfur atoms from cysteine to produce alanine. Functions as a sulfur delivery protein for Fe-S cluster synthesis onto IscU, an Fe-S scaffold assembly protein, as well as other S acceptor proteins	NA
UHGV-0172362_22	PADLOC	SspA_00001	SspA	SSP
UHGV-0172362_22	Pfam	PF00266	Aminotransferase class-V	Aminotran_5
UHGV-0172362_22	COG	COG1104	Cysteine desulfurase/Cysteine sulfinate desulfinase IscS or related enzyme, NifS family	NA
UHGV-0172362_22	Structural annotation	PF00266, MF_00331, TIGR03403, COG1104	NA	NA
UHGV-0172362_25	PHROG	phrog_16129	excisionase	integration and excision
UHGV-0172362_25	UniRef90	UniRef90_A0A3R6LNM2	Helix-turn-helix domain-containing protein	NA
UHGV-0172362_25	eggNOG-mapper	658088.HMPREF0987_01415	Excisionase from transposon Tn916	NA
UHGV-0172362_25	Pfam	PF09035	Excisionase from transposon Tn916	Tn916-Xis
UHGV-0172362_25	Structural annotation	PF09035, TIGR01764, COG3311	NA	NA
UHGV-0172362_26	KOfam	K14059	int; integrase	NA
UHGV-0172362_26	PHROG	phrog_1	integrase	integration and excision
UHGV-0172362_26	UniRef90	UniRef90_A0A3E2XD78	Site-specific integrase	NA
UHGV-0172362_26	eggNOG-mapper	742733.HMPREF9469_05559	COG COG4974 Site-specific recombinase XerD	NA
UHGV-0172362_26	Pfam	PF02920	DNA binding domain of tn916 integrase	Integrase_DNA
UHGV-0172362_26	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0172362_26	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0172362_26	Structural annotation	PF00589, PF02920, PF14659, MF_01808, TIGR02224, COG4974	NA	NA
UHGV-0172362_27	Structural annotation	PF13443, MF_00535, TIGR03070, COG1396	NA	NA
UHGV-0172362_28	PHROG	phrog_1847	NA	unknown function
UHGV-0172362_28	UniRef90	UniRef90_UPI001C0F7F22	GIY-YIG nuclease family protein	NA
UHGV-0172362_28	eggNOG-mapper	290402.Cbei_2301	T5orf172	NA
UHGV-0172362_28	Pfam	PF13250	NA	DUF4041
UHGV-0172362_28	Pfam	PF13455	Meiotically up-regulated gene 113	MUG113
UHGV-0172362_28	COG	COG0172	Seryl-tRNA synthetase	NA
UHGV-0172362_29	Pfam	PF13248	zinc-ribbon domain	zf-ribbon_3
UHGV-0172362_32	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0172362_32	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-0172362_32	UniRef90	UniRef90_A0A1X2FY70	Bro-N domain-containing protein	NA
UHGV-0172362_32	eggNOG-mapper	180332.JTGN01000008_gene4114	BRO family, N-terminal domain	NA
UHGV-0172362_32	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0172362_32	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0172362_32	COG	COG3617	Prophage antirepressor	NA
UHGV-0172362_32	Structural annotation	PF03374, PF02498, TIGR02681, COG3645	NA	NA
UHGV-0172362_34	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0172362_34	PHROG	phrog_26861	NA	unknown function
UHGV-0172362_34	UniRef90	UniRef90_A0A2V2ET56	Single-stranded DNA-binding protein	NA
UHGV-0172362_34	eggNOG-mapper	1195236.CTER_4948	PFAM single-strand binding protein	NA
UHGV-0172362_34	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0172362_34	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0172362_34	Structural annotation	PF00436, PF13567, MF_00984, NF004476, COG0629	NA	NA
UHGV-0172362_35	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-0172362_35	PHROG	phrog_1	integrase	integration and excision
UHGV-0172362_35	UniRef90	UniRef90_A0A7C6Q058	Tyrosine recombinase XerD	NA
UHGV-0172362_35	eggNOG-mapper	62977.ACIAD2657	Belongs to the 'phage' integrase family. XerC subfamily	NA
UHGV-0172362_35	Pfam	PF02899	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_1
UHGV-0172362_35	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0172362_35	COG	COG4973	Site-specific recombinase XerC	NA
UHGV-0172362_35	Structural annotation	PF00589, PF02899, MF_01807, TIGR02224, COG4974	NA	NA
UHGV-0172362_36	Pfam	PF08239	Bacterial SH3 domain	SH3_3
UHGV-0172362_36	COG	COG3807	SH3-like domain	NA
UHGV-0172362_36	Structural annotation	PF08239, PF18342, NF040670, COG3103	NA	NA
UHGV-0172362_39	Pfam	PF13384	Homeodomain-like domain	HTH_23
UHGV-0172362_40	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0172362_44	PHROG	phrog_1997	NA	unknown function
UHGV-0172362_45	eggNOG-mapper	742740.HMPREF9474_03128	NA	NA
UHGV-0172362_45	Structural annotation	PF18350, MF_00613, NF002745	NA	NA
UHGV-0172362_46	Structural annotation	PF18350, MF_00369, COG2139	NA	NA
UHGV-0172362_48	PHROG	phrog_924	NA	unknown function
UHGV-0172362_48	UniRef90	UniRef90_A0A7C1LV30	NA	NA
UHGV-0172362_48	eggNOG-mapper	1005994.GTGU_00287	NA	NA
UHGV-0172362_48	Pfam	PF04448	NA	DUF551
UHGV-0172362_48	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0172362_48	Structural annotation	NF041588	NA	NA
UHGV-0172362_49	Structural annotation	PF08962	NA	NA
UHGV-0172362_51	Structural annotation	PF05606, MF_00075, TIGR00008, COG0361	NA	NA
UHGV-0172362_52	PHROG	phrog_6918	holin	lysis
UHGV-0172362_52	UniRef90	UniRef90_A0A6N8H4C3	Holin	NA
UHGV-0172362_52	eggNOG-mapper	1297617.JPJD01000020_gene301	Bacteriophage holin of superfamily 6 (Holin_LLH)	NA
UHGV-0172362_52	Pfam	PF09682	Bacteriophage holin of superfamily 6 (Holin_LLH)	Phage_holin_6_1
UHGV-0172362_52	Structural annotation	PF09682, TIGR01673	NA	NA
UHGV-0172362_53	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0172362_53	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0172362_53	UniRef90	UniRef90_A0A8A5CNV0	Single-stranded DNA-binding protein	NA
UHGV-0172362_53	eggNOG-mapper	1294142.CINTURNW_4146	Single-stranded DNA-binding protein	NA
UHGV-0172362_53	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0172362_53	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0172362_53	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0172362_53	Structural annotation	PF00436, MF_00984, NF005579, COG0629	NA	NA
UHGV-0172362_55	PHROG	phrog_7339	DNA repair exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0172362_55	UniRef90	UniRef90_A0A8F2F0X6	Metallophosphoesterase	NA
UHGV-0172362_55	eggNOG-mapper	1150474.JQJI01000006_gene784	metallophosphoesterase	NA
UHGV-0172362_55	Pfam	PF00149	Calcineurin-like phosphoesterase	Metallophos
UHGV-0172362_55	COG	COG1408	Predicted phosphohydrolase, MPP superfamily	NA
UHGV-0172362_55	Structural annotation	PF12850, MF_00325, NF003118, COG1311	NA	NA
UHGV-0172362_57	UniRef90	UniRef90_K1TIU6	Protein containing SH3, type 3 domain protein	NA
UHGV-0172362_58	PHROG	phrog_23837	virion structural protein	head and packaging
UHGV-0172362_59	PHROG	phrog_1887	tail protein	tail
UHGV-0172362_59	eggNOG-mapper	1157490.EL26_20650	NA	NA
UHGV-0172362_59	Structural annotation	PF14594, NF033848, COG3500	NA	NA
UHGV-0172362_60	PHROG	phrog_1382	NA	unknown function
UHGV-0172362_60	eggNOG-mapper	743719.PaelaDRAFT_2420	NA	NA
UHGV-0172362_62	eggNOG-mapper	515620.EUBELI_01665	cell adhesion involved in biofilm formation	NA
UHGV-0172362_62	Pfam	PF07679	Immunoglobulin I-set domain	I-set
UHGV-0172362_62	COG	COG1470	NA	NA
UHGV-0172362_63	eggNOG-mapper	411902.CLOBOL_00122	NA	NA
UHGV-0172362_65	Structural annotation	PF19266, PF02010, MF_04116, NF032891, TIGR01633, COG3499, COG3506, COG3291	NA	NA
UHGV-0172362_66	KOfam	K20478	GOLGB1; golgin subfamily B member 1	NA
UHGV-0172362_66	PHROG	phrog_4211	tail length tape measure protein	tail
UHGV-0172362_66	eggNOG-mapper	397290.C810_01746	Phage-related minor tail protein	NA
UHGV-0172362_66	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0172362_66	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0172362_66	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0172362_67	Structural annotation	TIGR01725	NA	NA
UHGV-0172362_68	Pfam	PF02368	Bacterial Ig-like domain (group 2)	Big_2
UHGV-0172362_68	Structural annotation	PF06488, PF02368, TIGR01603, COG5492	NA	NA