UHGV-0172373

Genome information

Genome length 52,609 bps

CDS count 75

Completeness 100.00% (complete)

geNomad score 0.9739

Prediction confidence Confident

Genome information
Genome ID	UHGV-0172373
vOTU ID	vOTU-046449
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_593238
BioSample	SAMN09781784
Country	Madagascar
Virus prediction confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	11
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9739
Virus hallmark genes (geNomad)	5
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	33.03
Jumbo phage	No

Genome content
Genome length	52,609 bps
GC content	51.51%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	75
CDS density	94.84%
Average CDS length	669.24 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0172373_3	PHROG	phrog_14242	major head protein	head and packaging
UHGV-0172373_3	UniRef90	UniRef90_A0A3D2CI53	Phage major capsid protein	NA
UHGV-0172373_3	eggNOG-mapper	871968.DESME_08900	NA	NA
UHGV-0172373_3	NCBIFam	NF033394.1	phage major capsid protein	NA
UHGV-0172373_3	Structural annotation	PF17236, MF_04133, NF033394, COG4653	NA	NA
UHGV-0172373_5	Structural annotation	PF20387	NA	NA
UHGV-0172373_6	PHROG	phrog_511	internal virion protein	head and packaging
UHGV-0172373_6	eggNOG-mapper	657322.FPR_02360	NA	NA
UHGV-0172373_6	Structural annotation	PF11134, MF_00923, NF010237, NF038128, COG5276	NA	NA
UHGV-0172373_11	PHROG	phrog_37604	NA	unknown function
UHGV-0172373_11	eggNOG-mapper	1232443.BAIA02000078_gene10	NA	NA
UHGV-0172373_12	PHROG	phrog_918	NA	unknown function
UHGV-0172373_12	UniRef90	UniRef90_UPI00111D16CF	NA	NA
UHGV-0172373_12	eggNOG-mapper	298338.Q5ULN6_9CAUD	NA	NA
UHGV-0172373_12	Pfam	PF19791	NA	DUF6275
UHGV-0172373_12	Structural annotation	PF19791	NA	NA
UHGV-0172373_13	PHROG	phrog_1129	holin	lysis
UHGV-0172373_13	UniRef90	UniRef90_A0A416MDZ9	Enolase	NA
UHGV-0172373_13	eggNOG-mapper	742740.HMPREF9474_03522	NA	NA
UHGV-0172373_13	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-0172373_13	Structural annotation	PF06946	NA	NA
UHGV-0172373_14	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0172373_14	PHROG	phrog_15001	endolysin	lysis
UHGV-0172373_14	UniRef90	UniRef90_R6U0F7	Putative lipoprotein	NA
UHGV-0172373_14	eggNOG-mapper	552398.HMPREF0866_01156	Ami_2	NA
UHGV-0172373_14	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0172373_14	COG	COG5632	N-acetylmuramoyl-L-alanine amidase CwlA	NA
UHGV-0172373_16	PHROG	phrog_22978	NA	unknown function
UHGV-0172373_16	eggNOG-mapper	1410650.JHWL01000003_gene2814	NA	NA
UHGV-0172373_16	Pfam	PF18838	Large polyvalent protein associated domain 23	LPD23
UHGV-0172373_16	Pfam	PF18760	ADP-Ribosyltransferase in polyvalent proteins	ART-PolyVal
UHGV-0172373_17	Structural annotation	PF04545, MF_00245, NF001067, COG2771	NA	NA
UHGV-0172373_18	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0172373_18	UniRef90	UniRef90_A0A7X9GB27	RNA polymerase subunit sigma-24	NA
UHGV-0172373_18	eggNOG-mapper	1540257.JQMW01000004_gene433	NA	NA
UHGV-0172373_20	KOfam	K03091	sigH; RNA polymerase sporulation-specific sigma factor	NA
UHGV-0172373_20	Pfam	PF04542	Sigma-70 region 2	Sigma70_r2
UHGV-0172373_20	Pfam	PF04545	Sigma-70, region 4	Sigma70_r4
UHGV-0172373_20	NCBIFam	TIGR02937.1	sigma-70 family RNA polymerase sigma factor	NA
UHGV-0172373_20	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0172373_20	Structural annotation	PF04542, PF08281, MF_00962, NF006158, COG1191	NA	NA
UHGV-0172373_23	eggNOG-mapper	318464.IO99_07375	NA	NA
UHGV-0172373_24	COG	COG1327	Transcriptional regulator NrdR, contains Zn-ribbon and ATP-cone domains	NA
UHGV-0172373_24	Structural annotation	PF04606, NF007241	NA	NA
UHGV-0172373_26	PHROG	phrog_2245	nucleoside triphosphate pyrophosphohydrolase	other
UHGV-0172373_26	UniRef90	UniRef90_A0A4U9RLZ8	NA	NA
UHGV-0172373_26	eggNOG-mapper	706433.HMPREF9430_01279	NA	NA
UHGV-0172373_26	Structural annotation	PF12643, MF_01020, TIGR03188	NA	NA
UHGV-0172373_32	PHROG	phrog_419	NA	unknown function
UHGV-0172373_32	UniRef90	UniRef90_UPI001E39AC50	NA	NA
UHGV-0172373_32	eggNOG-mapper	431943.CKL_1824	NA	NA
UHGV-0172373_34	PHROG	phrog_599	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
UHGV-0172373_34	UniRef90	UniRef90_R6QWY1	28	NA
UHGV-0172373_34	dbAPIS	APIS033	Lar is functionally similar to RaI, is able to alleviate restriction and enhance modification by EcoKI. And the nucleotide sequences of their genes share 47% identity, indicating a common origin.	NA
UHGV-0172373_34	Structural annotation	PF14354, TIGR03655	NA	NA
UHGV-0172373_37	PHROG	phrog_190	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0172373_37	UniRef90	UniRef90_A0A4P8JTL4	NA	NA
UHGV-0172373_37	eggNOG-mapper	742767.HMPREF9456_03412	NA	NA
UHGV-0172373_37	Pfam	PF06356	NA	DUF1064
UHGV-0172373_37	Structural annotation	PF06356	NA	NA
UHGV-0172373_39	KOfam	K17680	PEO1; twinkle protein [EC:5.6.2.3]	NA
UHGV-0172373_39	PHROG	phrog_239	DNA primase/helicase	DNA, RNA and nucleotide metabolism
UHGV-0172373_39	UniRef90	UniRef90_A0A413G4P8	SF4 helicase domain-containing protein	NA
UHGV-0172373_39	eggNOG-mapper	247490.KSU1_C0210	Participates in initiation and elongation during chromosome replication	NA
UHGV-0172373_39	Pfam	PF13155	Toprim-like	Toprim_2
UHGV-0172373_39	Pfam	PF13481	AAA domain	AAA_25
UHGV-0172373_39	COG	COG0305	Replicative DNA helicase	NA
UHGV-0172373_39	Structural annotation	PF03796, PF19898, MF_04154, TIGR03877, TIGR01391, COG0467, COG0358	NA	NA
UHGV-0172373_41	PHROG	phrog_20437	DNA replication initiation	DNA, RNA and nucleotide metabolism
UHGV-0172373_41	UniRef90	UniRef90_A0A098B081	NA	NA
UHGV-0172373_41	eggNOG-mapper	768710.DesyoDRAFT_5236	DnaD domain protein	NA
UHGV-0172373_41	Pfam	PF14297	Lin1244/Lin1753-like, N-terminal	Lin1244_N
UHGV-0172373_41	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0172373_41	Structural annotation	PF14297	NA	NA
UHGV-0172373_42	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0172373_42	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0172373_42	UniRef90	UniRef90_R6TSJ9	Single-stranded DNA-binding protein	NA
UHGV-0172373_42	eggNOG-mapper	445972.ANACOL_04434	Single-stranded DNA-binding protein	NA
UHGV-0172373_42	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0172373_42	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0172373_42	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0172373_42	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0172373_42	Structural annotation	PF00436, MF_00984, NF005579, COG0629	NA	NA
UHGV-0172373_43	PHROG	phrog_4973	NA	unknown function
UHGV-0172373_43	Pfam	PF14090	Helix-turn-helix domain	HTH_39
UHGV-0172373_43	Structural annotation	PF14090, NF040939, COG4738	NA	NA
UHGV-0172373_45	UniRef90	UniRef90_A0A098GES5	Putative phage associated protein	NA
UHGV-0172373_45	Structural annotation	PF01423, MF_00257, NF001963, COG1958	NA	NA
UHGV-0172373_46	PHROG	phrog_7566	NA	unknown function
UHGV-0172373_46	eggNOG-mapper	1118057.CAGX01000020_gene1648	NA	NA
UHGV-0172373_47	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0172373_47	UniRef90	UniRef90_A0A8D9PDS2	NinB protein	NA
UHGV-0172373_47	eggNOG-mapper	445972.ANACOL_01825	NA	NA
UHGV-0172373_47	Structural annotation	PF05772, NF007281	NA	NA
UHGV-0172373_48	PHROG	phrog_659	Sak-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0172373_48	UniRef90	UniRef90_UPI001E5A6693	NA	NA
UHGV-0172373_48	eggNOG-mapper	1507.HMPREF0262_00431	NA	NA
UHGV-0172373_48	Pfam	PF06378	NA	DUF1071
UHGV-0172373_48	Structural annotation	PF06378, COG4712	NA	NA
UHGV-0172373_49	PHROG	phrog_253	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UHGV-0172373_49	UniRef90	UniRef90_UPI001898EED4	siphovirus Gp157 family protein	NA
UHGV-0172373_49	eggNOG-mapper	1226322.HMPREF1545_04074	Siphovirus Gp157	NA
UHGV-0172373_49	Pfam	PF05565	Siphovirus Gp157	Sipho_Gp157
UHGV-0172373_49	Structural annotation	PF05565	NA	NA
UHGV-0172373_53	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0172373_55	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0172373_55	UniRef90	UniRef90_A0A1V0QCA1	HTH cro/C1-type domain-containing protein	NA
UHGV-0172373_55	eggNOG-mapper	397291.C804_05807	sequence-specific DNA binding	NA
UHGV-0172373_55	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0172373_55	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0172373_55	Structural annotation	PF12844, MF_00535, NF007257, COG3655	NA	NA
UHGV-0172373_61	UniRef90	UniRef90_A0A1Q6SAI0	HTH cro/C1-type domain-containing protein	NA
UHGV-0172373_61	eggNOG-mapper	556261.HMPREF0240_01759	Putative restriction endonuclease	NA
UHGV-0172373_61	Pfam	PF13560	Helix-turn-helix domain	HTH_31
UHGV-0172373_61	COG	COG4636	Endonuclease, Uma2 family (restriction endonuclease fold)	NA
UHGV-0172373_61	Structural annotation	PF13560, MF_00535, NF041951, COG1396	NA	NA
UHGV-0172373_62	KOfam	K14059	int; integrase	NA
UHGV-0172373_62	PHROG	phrog_1	integrase	integration and excision
UHGV-0172373_62	UniRef90	UniRef90_A0A1C7G906	Site-specific integrase	NA
UHGV-0172373_62	eggNOG-mapper	887325.HMPREF0381_0346	Phage integrase, N-terminal SAM-like domain	NA
UHGV-0172373_62	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0172373_62	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0172373_62	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0172373_62	Structural annotation	PF00589, PF12167, MF_02055, NF040815, COG4974	NA	NA
UHGV-0172373_63	Structural annotation	PF00210, MF_01441, NF011597, COG1528	NA	NA
UHGV-0172373_64	eggNOG-mapper	1408437.JNJN01000043_gene802	NA	NA
UHGV-0172373_65	eggNOG-mapper	1235790.C805_00060	NA	NA
UHGV-0172373_66	eggNOG-mapper	658655.HMPREF0988_00918	NA	NA
UHGV-0172373_68	eggNOG-mapper	626523.GCWU000342_00291	NA	NA
UHGV-0172373_68	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0172373_68	COG	COG2944	DNA-binding transcriptional regulator YiaG, XRE-type HTH domain	NA
UHGV-0172373_71	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0172373_72	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0172373_72	PHROG	phrog_979	terminase large subunit	head and packaging
UHGV-0172373_72	UniRef90	UniRef90_A0A413FUY4	Terminase_3 domain-containing protein	NA
UHGV-0172373_72	eggNOG-mapper	665956.HMPREF1032_03884	Terminase-like family	NA
UHGV-0172373_72	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0172373_72	COG	COG1783	Phage terminase large subunit	NA
UHGV-0172373_72	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0172373_75	PHROG	phrog_156	portal protein	head and packaging
UHGV-0172373_75	eggNOG-mapper	588581.Cpap_1526	NA	NA