UHGV-0172374

Genome information

Genome length 33,415 bps

CDS count 50

Completeness 66.24% (medium-quality)

geNomad score 0.9794

Prediction confidence Confident

Genome information
Genome ID	UHGV-0172374
vOTU ID	vOTU-028604
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_592810
BioSample	SAMN09781742
Country	Madagascar
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	66.24% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	14
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9794
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	23.07
Jumbo phage	No

Genome content
Genome length	33,415 bps
GC content	33.56%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	50
CDS density	93.83%
Average CDS length	630.72 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0172374_1	PHROG	phrog_64	portal protein	head and packaging
UHGV-0172374_1	UniRef90	UniRef90_A0A843JBG3	Phage portal protein	NA
UHGV-0172374_1	eggNOG-mapper	1567015.A0A0A7RUQ6_9VIRU	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0172374_1	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0172374_1	Structural annotation	PF05133, MF_04120, TIGR01538, COG3567	NA	NA
UHGV-0172374_3	PHROG	phrog_1657	head morphogenesis	head and packaging
UHGV-0172374_3	UniRef90	UniRef90_A0A1G9U003	Phage Mu protein F like protein	NA
UHGV-0172374_3	eggNOG-mapper	1121342.AUCO01000012_gene1699	NA	NA
UHGV-0172374_5	PHROG	phrog_1315	NA	unknown function
UHGV-0172374_6	eggNOG-mapper	1231057.AMGD01000018_gene3620	NA	NA
UHGV-0172374_6	Structural annotation	MF_02110	NA	NA
UHGV-0172374_7	PHROG	phrog_909	major head protein	head and packaging
UHGV-0172374_7	UniRef90	UniRef90_A0A512PLH0	Putative structural protein-phage associated	NA
UHGV-0172374_7	eggNOG-mapper	1158612.I580_01911	NA	NA
UHGV-0172374_7	Structural annotation	PF02924	NA	NA
UHGV-0172374_8	PHROG	phrog_29	major head protein	head and packaging
UHGV-0172374_8	UniRef90	UniRef90_UPI00082C04A5	major capsid protein	NA
UHGV-0172374_8	eggNOG-mapper	1158612.I580_01912	Phage major capsid protein E	NA
UHGV-0172374_8	Pfam	PF03864	Phage major capsid protein E	Phage_cap_E
UHGV-0172374_8	Structural annotation	PF03864, MF_04133, NF041162, COG4653	NA	NA
UHGV-0172374_9	Structural annotation	PF07498	NA	NA
UHGV-0172374_10	PHROG	phrog_4020	NA	unknown function
UHGV-0172374_10	eggNOG-mapper	1443122.Z958_05850	NA	NA
UHGV-0172374_11	PHROG	phrog_8435	NA	unknown function
UHGV-0172374_11	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-0172374_12	eggNOG-mapper	1443122.Z958_05860	NA	NA
UHGV-0172374_12	Structural annotation	PF04883, TIGR01725	NA	NA
UHGV-0172374_13	PHROG	phrog_7585	NA	unknown function
UHGV-0172374_13	eggNOG-mapper	1304880.JAGB01000002_gene2212	NA	NA
UHGV-0172374_13	Structural annotation	PF05657, COG5003	NA	NA
UHGV-0172374_14	PHROG	phrog_6686	tail tube protein	tail
UHGV-0172374_14	UniRef90	UniRef90_A0A1C6KI12	S-l_SbsC_C domain-containing protein	NA
UHGV-0172374_14	eggNOG-mapper	1304880.JAGB01000002_gene2211	NA	NA
UHGV-0172374_14	Structural annotation	PF06488, TIGR01603, COG3498	NA	NA
UHGV-0172374_15	PHROG	phrog_6280	NA	unknown function
UHGV-0172374_15	UniRef90	UniRef90_A0A8J6PH67	Esterase	NA
UHGV-0172374_15	eggNOG-mapper	332101.JIBU02000023_gene4728	NA	NA
UHGV-0172374_16	PHROG	phrog_1533	tail length tape measure protein	tail
UHGV-0172374_16	UniRef90	UniRef90_A0A7U9JT69	Phage tail tape measure protein, TP901 family	NA
UHGV-0172374_16	eggNOG-mapper	1304866.K413DRAFT_1234	tail tape measure protein	NA
UHGV-0172374_16	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0172374_16	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0172374_16	COG	COG5283	Phage-related tail protein	NA
UHGV-0172374_16	Structural annotation	PF10145, TIGR01760, COG3941	NA	NA
UHGV-0172374_17	PHROG	phrog_36410	NA	unknown function
UHGV-0172374_17	eggNOG-mapper	706433.HMPREF9430_01256	Phage tail protein	NA
UHGV-0172374_17	Structural annotation	PF20753, PF16774, TIGR01633, COG4722	NA	NA
UHGV-0172374_18	PHROG	phrog_538	minor tail protein	tail
UHGV-0172374_18	UniRef90	UniRef90_A0A843GTT7	Siphovirus ReqiPepy6 Gp37-like family protein	NA
UHGV-0172374_18	eggNOG-mapper	1134413.ANNK01000119_gene2432	Siphovirus ReqiPepy6 Gp37-like protein	NA
UHGV-0172374_18	Pfam	PF14594	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
UHGV-0172374_19	PHROG	phrog_1220	head protein	head and packaging
UHGV-0172374_19	eggNOG-mapper	755731.Clo1100_0558	COG NOG18825 non supervised orthologous group	NA
UHGV-0172374_19	Structural annotation	PF20747	NA	NA
UHGV-0172374_20	eggNOG-mapper	1410626.JHXB01000004_gene213	NA	NA
UHGV-0172374_20	Pfam	PF09479	Listeria-Bacteroides repeat domain (List_Bact_rpt)	Flg_new
UHGV-0172374_20	NCBIFam	TIGR02543.1	TIGR02543 family repeat protein	NA
UHGV-0172374_20	COG	COG1579	Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain	NA
UHGV-0172374_20	Structural annotation	PF09479, PF00703, NF033188	NA	NA
UHGV-0172374_23	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0172374_23	Pfam	PF04545	Sigma-70, region 4	Sigma70_r4
UHGV-0172374_23	Structural annotation	PF04545, MF_00674, NF008895, COG2739	NA	NA
UHGV-0172374_24	eggNOG-mapper	1408437.JNJN01000043_gene805	NA	NA
UHGV-0172374_26	PHROG	phrog_16490	NA	unknown function
UHGV-0172374_26	eggNOG-mapper	476272.RUMHYD_01770	NA	NA
UHGV-0172374_27	eggNOG-mapper	1408437.JNJN01000043_gene802	NA	NA
UHGV-0172374_28	Structural annotation	PF00210, NF007638, COG1528	NA	NA
UHGV-0172374_29	Structural annotation	PF06531	NA	NA
UHGV-0172374_30	PHROG	phrog_15863	NA	unknown function
UHGV-0172374_30	UniRef90	UniRef90_A0A417CWJ3	J domain-containing protein	NA
UHGV-0172374_30	eggNOG-mapper	397288.C806_01234	DnaJ molecular chaperone homology domain	NA
UHGV-0172374_30	COG	COG2214	Curved DNA-binding protein CbpA, contains a DnaJ-like domain	NA
UHGV-0172374_31	Structural annotation	PF07408, MF_01560, NF010187, COG4838	NA	NA
UHGV-0172374_32	PHROG	phrog_3754	NA	unknown function
UHGV-0172374_32	eggNOG-mapper	397290.C810_05204	NA	NA
UHGV-0172374_35	Structural annotation	PF06003, MF_01077, NF037951, COG1862	NA	NA
UHGV-0172374_37	KOfam	K02316	dnaG; DNA primase [EC:2.7.7.101]	NA
UHGV-0172374_37	PHROG	phrog_47	DNA primase	DNA, RNA and nucleotide metabolism
UHGV-0172374_37	UniRef90	UniRef90_A0A843GN62	Toprim domain-containing protein	NA
UHGV-0172374_37	eggNOG-mapper	931626.Awo_c24320	RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication	NA
UHGV-0172374_37	Pfam	PF01807	CHC2 zinc finger	zf-CHC2
UHGV-0172374_37	Pfam	PF13155	Toprim-like	Toprim_2
UHGV-0172374_37	COG	COG0358	DNA primase (bacterial type)	NA
UHGV-0172374_37	Structural annotation	PF01807, PF13155, MF_00974, TIGR01391, COG0358	NA	NA
UHGV-0172374_39	Structural annotation	PF08804	NA	NA
UHGV-0172374_41	KOfam	K02337	dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]	NA
UHGV-0172374_41	PHROG	phrog_405	DNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-0172374_41	UniRef90	UniRef90_A0A843GPT9	DNA-directed DNA polymerase	NA
UHGV-0172374_41	eggNOG-mapper	1123371.ATXH01000024_gene1024	Bacterial DNA polymerase III alpha subunit	NA
UHGV-0172374_41	Pfam	PF02811	PHP domain	PHP
UHGV-0172374_41	Pfam	PF07733	Bacterial DNA polymerase III alpha NTPase domain	DNA_pol3_alpha
UHGV-0172374_41	Pfam	PF17657	Bacterial DNA polymerase III alpha subunit finger domain	DNA_pol3_finger
UHGV-0172374_41	Pfam	PF14579	Helix-hairpin-helix motif	HHH_6
UHGV-0172374_41	NCBIFam	TIGR00594.1	DNA polymerase III subunit alpha	NA
UHGV-0172374_41	COG	COG0587	DNA polymerase III, alpha subunit	NA
UHGV-0172374_41	Structural annotation	PF07733, PF02811, PF17657, PF14579, MF_01902, TIGR00594, COG0587	NA	NA
UHGV-0172374_42	KOfam	K03553	recA; recombination protein RecA	NA
UHGV-0172374_42	PHROG	phrog_97	UvsX-like recombinase	other
UHGV-0172374_42	UniRef90	UniRef90_UPI001BCFCE00	recombinase RecA	NA
UHGV-0172374_42	eggNOG-mapper	469616.FMAG_02276	Can catalyze the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage	NA
UHGV-0172374_42	Pfam	PF00154	recA bacterial DNA recombination protein	RecA
UHGV-0172374_42	COG	COG0468	RecA/RadA recombinase	NA
UHGV-0172374_42	Structural annotation	PF00154, MF_00268, TIGR02012, COG0468	NA	NA
UHGV-0172374_43	Structural annotation	PF01775, MF_00273, NF010188, COG2157	NA	NA
UHGV-0172374_44	PHROG	phrog_2506	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0172374_44	Structural annotation	PF01930, MF_03030, TIGR00372, COG5377	NA	NA
UHGV-0172374_47	Structural annotation	PF18358	NA	NA
UHGV-0172374_48	KOfam	K03427	hsdM; type I restriction enzyme M protein [EC:2.1.1.72]	NA
UHGV-0172374_48	PHROG	phrog_5696	NA	unknown function
UHGV-0172374_48	UniRef90	UniRef90_A0A6N9P8V9	SAM-dependent DNA methyltransferase	NA
UHGV-0172374_48	eggNOG-mapper	742733.HMPREF9469_05064	N-6 DNA Methylase	NA
UHGV-0172374_48	PADLOC	MTase_I_00012	Type I methyltransferase	RM
UHGV-0172374_48	Pfam	PF02384	N-6 DNA Methylase	N6_Mtase
UHGV-0172374_48	COG	COG0286	Type I restriction-modification system, DNA methylase subunit	NA
UHGV-0172374_48	Structural annotation	COG0286	NA	NA
UHGV-0172374_49	PHROG	phrog_159	RuvC-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0172374_49	Structural annotation	PF02075, MF_00034, NF000711, COG0817	NA	NA