UHGV-0172387

Genome information

Genome length 35,102 bps

CDS count 49

Completeness 86.77% (medium-quality)

geNomad score 0.9714

Prediction confidence Confident

Genome information
Genome ID	UHGV-0172387
vOTU ID	vOTU-028605
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_583331
BioSample	SAMN09781724
Country	Madagascar
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	86.77% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	18
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9714
Virus hallmark genes (geNomad)	6
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	57.81
Jumbo phage	No

Genome content
Genome length	35,102 bps
GC content	46.87%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	49
CDS density	94.49%
Average CDS length	679.22 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0172387_4	PHROG	phrog_25852	virion structural protein	head and packaging
UHGV-0172387_4	eggNOG-mapper	1202532.FF52_10998	PFAM SMP-30 Gluconolaconase	NA
UHGV-0172387_4	COG	COG1345	Flagellar capping protein FliD	NA
UHGV-0172387_6	PHROG	phrog_199	holin	lysis
UHGV-0172387_6	UniRef90	UniRef90_A0A1C6GH21	Phage-related holin (Lysis protein)	NA
UHGV-0172387_6	eggNOG-mapper	1298920.KI911353_gene544	Bacteriophage holin family	NA
UHGV-0172387_6	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0172387_6	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0172387_6	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-0172387_6	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0172387_7	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0172387_7	PHROG	phrog_670	endolysin	lysis
UHGV-0172387_7	UniRef90	UniRef90_R7KX59	Muramidase (Flagellum-specific)	NA
UHGV-0172387_7	eggNOG-mapper	471855.Shel_15380	Ami_2	NA
UHGV-0172387_7	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0172387_7	Pfam	PF05036	SPOR domain	SPOR
UHGV-0172387_7	COG	COG5632	N-acetylmuramoyl-L-alanine amidase CwlA	NA
UHGV-0172387_7	Structural annotation	PF01510, MF_04111, NF008758, COG5632	NA	NA
UHGV-0172387_8	KOfam	K14059	int; integrase	NA
UHGV-0172387_8	PHROG	phrog_1	integrase	integration and excision
UHGV-0172387_8	UniRef90	UniRef90_R7KSI7	Putative integrase	NA
UHGV-0172387_8	eggNOG-mapper	693746.OBV_25530	Phage integrase family	NA
UHGV-0172387_8	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0172387_8	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0172387_8	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0172387_8	Structural annotation	PF00589, PF14659, MF_01808, NF007246, COG4973	NA	NA
UHGV-0172387_9	KOfam	K10421	CLIP1, RSN; CAP-Gly domain-containing linker protein 1	NA
UHGV-0172387_9	PHROG	phrog_1847	NA	unknown function
UHGV-0172387_9	UniRef90	UniRef90_A0A3D1SDG7	T5orf172 domain-containing protein	NA
UHGV-0172387_9	eggNOG-mapper	411471.SUBVAR_05139	T5orf172	NA
UHGV-0172387_9	Pfam	PF13455	Meiotically up-regulated gene 113	MUG113
UHGV-0172387_9	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0172387_9	Structural annotation	PF13250, NF041454	NA	NA
UHGV-0172387_11	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-0172387_11	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0172387_11	UniRef90	UniRef90_R6C7J4	SOS-response transcriptional repressors (RecA-mediated autopeptidases)	NA
UHGV-0172387_11	eggNOG-mapper	411473.RUMCAL_03095	NA	NA
UHGV-0172387_11	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0172387_11	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-0172387_11	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0172387_11	Structural annotation	PF00717, PF01381, MF_00015, TIGR00498, COG1974	NA	NA
UHGV-0172387_12	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0172387_12	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0172387_12	UniRef90	UniRef90_UPI001967F323	helix-turn-helix domain-containing protein	NA
UHGV-0172387_12	eggNOG-mapper	1235792.C808_03097	Helix-turn-helix XRE-family like proteins	NA
UHGV-0172387_12	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0172387_12	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0172387_18	PHROG	phrog_757	DNA methyltransferase	other
UHGV-0172387_18	UniRef90	UniRef90_A0A355YQL4	DNA cytosine methyltransferase	NA
UHGV-0172387_18	eggNOG-mapper	397290.C810_01487	DNA (cytosine-5-)-methyltransferase activity	NA
UHGV-0172387_18	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0172387_18	Structural annotation	PF00145, MF_01872, TIGR00675, COG0270	NA	NA
UHGV-0172387_20	KOfam	K00390	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	NA
UHGV-0172387_20	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0172387_20	UniRef90	UniRef90_A0A1C6DY23	PUA domain (Predicted RNA-binding domain)	NA
UHGV-0172387_20	eggNOG-mapper	397291.C804_05723	Phosphoadenosine phosphosulfate reductase family	NA
UHGV-0172387_20	Pfam	PF01507	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
UHGV-0172387_20	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0172387_20	Structural annotation	PF01507, MF_00063, NF010369, COG0175	NA	NA
UHGV-0172387_21	KOfam	K03546	sbcC, rad50; DNA repair protein SbcC/Rad50	NA
UHGV-0172387_21	PHROG	phrog_1499	NA	unknown function
UHGV-0172387_21	UniRef90	UniRef90_A0A385TEI5	Chromosome segregation protein SMC	NA
UHGV-0172387_21	eggNOG-mapper	645991.Sgly_0320	domain protein	NA
UHGV-0172387_21	Pfam	PF13476	AAA domain	AAA_23
UHGV-0172387_21	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0172387_21	Structural annotation	PF11398, MF_00365, TIGR00634, COG0497	NA	NA
UHGV-0172387_22	PHROG	phrog_124	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0172387_22	UniRef90	UniRef90_UPI001896F7FA	AAA family ATPase	NA
UHGV-0172387_22	eggNOG-mapper	1235792.C808_05390	AAA domain	NA
UHGV-0172387_22	Pfam	PF13479	AAA domain	AAA_24
UHGV-0172387_22	Structural annotation	PF13479, MF_00268, TIGR01618, COG0468	NA	NA
UHGV-0172387_23	PHROG	phrog_2698	NA	unknown function
UHGV-0172387_23	UniRef90	UniRef90_UPI001D0882DA	NA	NA
UHGV-0172387_23	eggNOG-mapper	742723.HMPREF9477_00927	NA	NA
UHGV-0172387_23	Structural annotation	PF17426, NF005674	NA	NA
UHGV-0172387_24	KOfam	K17677	IRC3; ATP-dependent helicase IRC3 [EC:5.6.2.-]	NA
UHGV-0172387_24	PHROG	phrog_16	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0172387_24	UniRef90	UniRef90_A0A412ULZ3	ATP-dependent helicase	NA
UHGV-0172387_24	eggNOG-mapper	1235798.C817_03499	helicase superfamily c-terminal domain	NA
UHGV-0172387_24	PADLOC	mREase_IV_00005	Type IV methyl-directed restriction enzyme	RM
UHGV-0172387_24	Pfam	PF04851	Type III restriction enzyme, res subunit	ResIII
UHGV-0172387_24	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-0172387_24	COG	COG1061	Superfamily II DNA or RNA helicase	NA
UHGV-0172387_24	Structural annotation	PF04851, PF16203, MF_01489, NF008521, COG1061	NA	NA
UHGV-0172387_25	KOfam	K07505	repA; regulatory protein RepA	NA
UHGV-0172387_25	PHROG	phrog_2597	DNA primase	DNA, RNA and nucleotide metabolism
UHGV-0172387_25	UniRef90	UniRef90_A0A1C6E992	Regulatory protein repA	NA
UHGV-0172387_25	eggNOG-mapper	268407.PWYN_12365	Primase C terminal 2 (PriCT-2)	NA
UHGV-0172387_25	Pfam	PF08707	Primase C terminal 2 (PriCT-2)	PriCT_2
UHGV-0172387_25	Pfam	PF13481	AAA domain	AAA_25
UHGV-0172387_25	COG	COG3598	RecA-family ATPase	NA
UHGV-0172387_25	Structural annotation	PF13481, PF16793, PF08220, MF_00350, MF_00700, NF006606, NF001641, COG3598, COG3285	NA	NA
UHGV-0172387_26	PHROG	phrog_16687	NA	unknown function
UHGV-0172387_26	eggNOG-mapper	1123511.KB905868_gene197	NA	NA
UHGV-0172387_27	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0172387_27	PHROG	phrog_140	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0172387_27	UniRef90	UniRef90_UPI000F52952D	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-0172387_27	eggNOG-mapper	1235798.C817_03497	Endodeoxyribonuclease RusA	NA
UHGV-0172387_27	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0172387_27	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0172387_27	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0172387_28	Structural annotation	PF15591, MF_00667, NF000331	NA	NA
UHGV-0172387_30	PHROG	phrog_98	NA	unknown function
UHGV-0172387_30	UniRef90	UniRef90_UPI00189E57B4	YopX family protein	NA
UHGV-0172387_30	eggNOG-mapper	563031.HMPREF0666_01127	YopX protein	NA
UHGV-0172387_30	Pfam	PF09643	YopX protein	YopX
UHGV-0172387_30	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-0172387_31	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0172387_31	eggNOG-mapper	568816.Acin_1354	sigma factor activity	NA
UHGV-0172387_31	Pfam	PF04545	Sigma-70, region 4	Sigma70_r4
UHGV-0172387_31	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0172387_31	Structural annotation	PF07374, MF_00245, TIGR02980, COG2739	NA	NA
UHGV-0172387_32	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0172387_32	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0172387_32	UniRef90	UniRef90_A0A1C6GFY7	Phage terminase, large subunit, PBSX family	NA
UHGV-0172387_32	eggNOG-mapper	411461.DORFOR_01162	Phage terminase, large subunit, PBSX family	NA
UHGV-0172387_32	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0172387_32	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0172387_32	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0172387_32	COG	COG1783	Phage terminase large subunit	NA
UHGV-0172387_32	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0172387_33	PHROG	phrog_533	portal protein	head and packaging
UHGV-0172387_33	UniRef90	UniRef90_A0A1C6GG74	Phage portal protein, putative, A118 family	NA
UHGV-0172387_33	eggNOG-mapper	1292035.H476_1018	NA	NA
UHGV-0172387_33	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0172387_33	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0172387_34	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0172387_34	UniRef90	UniRef90_A0A1C6GGW2	Phage minor capsid protein 2	NA
UHGV-0172387_34	eggNOG-mapper	1160721.RBI_II00541	NA	NA
UHGV-0172387_34	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0172387_34	COG	COG2369	NA	NA
UHGV-0172387_34	Structural annotation	PF06152, PF12636	NA	NA
UHGV-0172387_35	eggNOG-mapper	411460.RUMTOR_02087	NA	NA
UHGV-0172387_37	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0172387_37	UniRef90	UniRef90_A0A1C6GGD5	Phage minor structural protein GP20	NA
UHGV-0172387_37	eggNOG-mapper	693746.OBV_18080	COG NOG36366 non supervised orthologous group	NA
UHGV-0172387_37	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0172387_37	Structural annotation	PF06810, MF_02110	NA	NA
UHGV-0172387_38	PHROG	phrog_422	major head protein	head and packaging
UHGV-0172387_38	UniRef90	UniRef90_W0U896	Phage major capsid protein	NA
UHGV-0172387_38	eggNOG-mapper	1160721.RBI_II00538	NA	NA
UHGV-0172387_38	Structural annotation	PF21703, MF_04119, TIGR04387, COG4834	NA	NA
UHGV-0172387_40	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0172387_40	eggNOG-mapper	1449050.JNLE01000003_gene3888	NA	NA
UHGV-0172387_41	Structural annotation	PF20536, COG5614	NA	NA
UHGV-0172387_42	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0172387_42	UniRef90	UniRef90_UPI000F51D749	minor capsid protein	NA
UHGV-0172387_42	eggNOG-mapper	883114.HMPREF9709_01190	Minor capsid protein	NA
UHGV-0172387_42	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0172387_42	Structural annotation	PF11114	NA	NA
UHGV-0172387_43	PHROG	phrog_3266	tail completion	connector
UHGV-0172387_43	eggNOG-mapper	665956.HMPREF1032_02946	NA	NA
UHGV-0172387_43	Structural annotation	PF20765	NA	NA
UHGV-0172387_44	PHROG	phrog_3099	NA	unknown function
UHGV-0172387_44	eggNOG-mapper	903814.ELI_3202	NA	NA
UHGV-0172387_44	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0172387_46	PHROG	phrog_706	NA	unknown function
UHGV-0172387_46	UniRef90	UniRef90_A0A1C6GGT7	Bacteriophage Gp15 protein	NA
UHGV-0172387_46	eggNOG-mapper	642492.Clole_0828	Bacteriophage Gp15 protein	NA
UHGV-0172387_46	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0172387_46	Structural annotation	PF06854	NA	NA
UHGV-0172387_47	PHROG	phrog_6900	tail length tape measure protein	tail
UHGV-0172387_47	eggNOG-mapper	411470.RUMGNA_02076	Phage tail tape measure protein, TP901 family	NA
UHGV-0172387_47	COG	COG5283	Phage-related tail protein	NA
UHGV-0172387_48	Structural annotation	PF20458, TIGR01633, COG3499	NA	NA