UHGV-0172399

Genome information

Genome length 13,039 bps

CDS count 16

Completeness 99.90% (high-quality)

geNomad score 0.9788

Prediction confidence Confident

Genome information
Genome ID	UHGV-0172399
vOTU ID	vOTU-068629
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_574267
BioSample	SAMN07449040
Country	India
Virus prediction confidence	Confident

Quality assessment
CheckV method	ITR
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	5
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9788
Virus hallmark genes (geNomad)	3
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	23.41
Jumbo phage	No

Genome content
Genome length	13,039 bps
GC content	51.02%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	16
CDS density	95.50%
Average CDS length	783.00 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0172399_1	PHROG	phrog_17312	tail protein	tail
UHGV-0172399_1	Pfam	PF12708	Pectate lyase superfamily protein	Pectate_lyase_3
UHGV-0172399_3	PHROG	phrog_2038	upper collar connector	connector
UHGV-0172399_3	UniRef90	UniRef90_A0A2Z4GUB7	Upper collar protein	NA
UHGV-0172399_3	eggNOG-mapper	10756.PORTL_BPPH2	Phage Connector (GP10)	NA
UHGV-0172399_3	Pfam	PF05352	Phage Connector (GP10)	Phage_connector
UHGV-0172399_3	Structural annotation	PF05352, TIGR01538, COG4695	NA	NA
UHGV-0172399_4	KOfam	K19304	mepM; murein DD-endopeptidase [EC:3.4.24.-]	NA
UHGV-0172399_4	PHROG	phrog_7767	metallo-endopeptidase	other
UHGV-0172399_4	UniRef90	UniRef90_A0A4Q0U6L7	Peptidase_M23 domain-containing protein (Fragment)	NA
UHGV-0172399_4	eggNOG-mapper	1308866.J416_13299	G5	NA
UHGV-0172399_4	Pfam	PF01551	Peptidase family M23	Peptidase_M23
UHGV-0172399_4	COG	COG0739	Murein DD-endopeptidase MepM and murein hydrolase activator NlpD, contains LysM domain	NA
UHGV-0172399_4	Structural annotation	PF01551, NF040883, COG0739	NA	NA
UHGV-0172399_5	Structural annotation	PF20934	NA	NA
UHGV-0172399_6	UniRef90	UniRef90_A0A843GUF8	Ig-like domain repeat protein	NA
UHGV-0172399_6	Structural annotation	PF21703, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0172399_9	UniRef90	UniRef90_UPI001C109117	phage holin family protein	NA
UHGV-0172399_9	eggNOG-mapper	742738.HMPREF9460_01388	Bacteriophage holin family	NA
UHGV-0172399_9	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0172399_9	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-0172399_9	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0172399_10	PHROG	phrog_2150	terminase	head and packaging
UHGV-0172399_10	UniRef90	UniRef90_A0A843GFY2	Phage DNA encapsidation protein	NA
UHGV-0172399_10	Pfam	PF05894	Podovirus DNA encapsidation protein (Gp16)	Podovirus_Gp16
UHGV-0172399_10	Structural annotation	PF05894, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0172399_11	KOfam	K21237	gp2; Podoviridae DNA polymerase [EC:2.7.7.7]	NA
UHGV-0172399_11	PHROG	phrog_1907	DNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-0172399_11	UniRef90	UniRef90_A0A4Q0U6P8	DNA-directed DNA polymerase (Fragment)	NA
UHGV-0172399_11	Pfam	PF03175	DNA polymerase type B, organellar and viral	DNA_pol_B_2
UHGV-0172399_11	Structural annotation	PF03175, MF_04055, NF004417, COG0417	NA	NA
UHGV-0172399_14	PHROG	phrog_6243	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0172399_14	Pfam	PF17427	Phage Single-stranded DNA-binding protein	Phi29_Phage_SSB
UHGV-0172399_14	Structural annotation	PF17427	NA	NA