UHGV-0172417

Genome information

Genome length 55,279 bps

CDS count 80

Completeness 100.00% (complete)

geNomad score 0.9576

Prediction confidence Confident

Genome information
Genome ID	UHGV-0172417
vOTU ID	vOTU-046452
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_566760
BioSample	SAMN06233224
Country	Spain
Virus prediction confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	13
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9576
Virus hallmark genes (geNomad)	5
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	16.96
Jumbo phage	No

Genome content
Genome length	55,279 bps
GC content	25.68%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	80
CDS density	92.45%
Average CDS length	641.03 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0172417_6	PHROG	phrog_3490	ERCC4-type nuclease	DNA, RNA and nucleotide metabolism
UHGV-0172417_6	UniRef90	UniRef90_A0A3E5EK62	ERCC4 domain-containing protein	NA
UHGV-0172417_6	eggNOG-mapper	658655.HMPREF0988_02583	ERCC4 domain	NA
UHGV-0172417_6	Pfam	PF02732	ERCC4 domain	ERCC4
UHGV-0172417_6	Structural annotation	PF03834, NF040956, COG1948	NA	NA
UHGV-0172417_7	KOfam	K12574	rnj; ribonuclease J [EC:3.1.-.-]	NA
UHGV-0172417_7	PHROG	phrog_392	metal-dependent hydrolase	other
UHGV-0172417_7	UniRef90	UniRef90_A0A1I6SGB5	Phosphoribosyl 1,2-cyclic phosphodiesterase	NA
UHGV-0172417_7	eggNOG-mapper	1027292.HMPREF9372_3394	Beta-lactamase superfamily domain	NA
UHGV-0172417_7	Pfam	PF12706	Beta-lactamase superfamily domain	Lactamase_B_2
UHGV-0172417_7	dbAPIS	APIS058	NA	NA
UHGV-0172417_7	COG	COG1235	Phosphoribosyl 1,2-cyclic phosphate phosphodiesterase	NA
UHGV-0172417_7	Structural annotation	PF02112, MF_01818, NF041851, COG1234	NA	NA
UHGV-0172417_8	PHROG	phrog_561	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0172417_8	UniRef90	UniRef90_UPI001F3F277E	recombinase RecT	NA
UHGV-0172417_8	eggNOG-mapper	537013.CLOSTMETH_01715	NA	NA
UHGV-0172417_8	Structural annotation	PF03837, TIGR01913, COG3723	NA	NA
UHGV-0172417_10	KOfam	K19171	dndD; DNA sulfur modification protein DndD	NA
UHGV-0172417_10	PHROG	phrog_77	SbcC-like subunit of palindrome specific endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0172417_10	Pfam	PF13476	AAA domain	AAA_23
UHGV-0172417_10	COG	COG3593	Predicted ATP-dependent endonuclease of the OLD family, contains P-loop ATPase and TOPRIM domains	NA
UHGV-0172417_10	Structural annotation	PF02463, MF_00449, NF041034, COG0419	NA	NA
UHGV-0172417_11	Pfam	PF04014	Antidote-toxin recognition MazE, bacterial antitoxin	MazE_antitoxin
UHGV-0172417_13	PHROG	phrog_3754	NA	unknown function
UHGV-0172417_13	eggNOG-mapper	1226322.HMPREF1545_00073	NA	NA
UHGV-0172417_15	UniRef90	UniRef90_A0A345BNU6	Spore surface glycoprotein	NA
UHGV-0172417_15	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0172417_16	PHROG	phrog_16490	NA	unknown function
UHGV-0172417_16	eggNOG-mapper	1408437.JNJN01000043_gene803	NA	NA
UHGV-0172417_18	PHROG	phrog_21718	NA	unknown function
UHGV-0172417_18	eggNOG-mapper	397290.C810_05210	NA	NA
UHGV-0172417_19	Pfam	PF04647	Accessory gene regulator B	AgrB
UHGV-0172417_25	PHROG	phrog_38707	NA	unknown function
UHGV-0172417_25	eggNOG-mapper	552398.HMPREF0866_01593	tail collar domain protein	NA
UHGV-0172417_25	COG	COG4675	Phage tail collar domain	NA
UHGV-0172417_27	PHROG	phrog_18725	NA	unknown function
UHGV-0172417_28	PHROG	phrog_13879	NA	unknown function
UHGV-0172417_28	eggNOG-mapper	1232449.BAHV02000010_gene2725	NA	NA
UHGV-0172417_28	Structural annotation	PF14594, PF03256, NF033848, COG4379, COG5156	NA	NA
UHGV-0172417_29	PHROG	phrog_1194	NA	unknown function
UHGV-0172417_30	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0172417_30	eggNOG-mapper	428127.EUBDOL_01563	homoserine transmembrane transporter activity	NA
UHGV-0172417_30	COG	COG1280	Threonine/homoserine/homoserine lactone efflux protein	NA
UHGV-0172417_33	Structural annotation	PF16463, PF17892, MF_04116, TIGR02241, NF012211, COG5437	NA	NA
UHGV-0172417_34	Structural annotation	PF08873, COG5003	NA	NA
UHGV-0172417_35	Structural annotation	TIGR01725	NA	NA
UHGV-0172417_37	Structural annotation	PF19586, TIGR01563, COG5614	NA	NA
UHGV-0172417_39	PHROG	phrog_29	major head protein	head and packaging
UHGV-0172417_39	UniRef90	UniRef90_A0A1R1C563	Phage capsid protein	NA
UHGV-0172417_39	eggNOG-mapper	1296659.S5MNB6_9CAUD	Phage major capsid protein E	NA
UHGV-0172417_39	Pfam	PF03864	Phage major capsid protein E	Phage_cap_E
UHGV-0172417_39	Structural annotation	PF03864, MF_04133, NF041162, COG4653	NA	NA
UHGV-0172417_40	PHROG	phrog_909	major head protein	head and packaging
UHGV-0172417_40	UniRef90	UniRef90_A0A098MDH2	NA	NA
UHGV-0172417_40	eggNOG-mapper	1158607.UAU_01759	NA	NA
UHGV-0172417_40	Structural annotation	PF02924	NA	NA
UHGV-0172417_41	PHROG	phrog_172	head scaffolding protein	head and packaging
UHGV-0172417_42	PHROG	phrog_64	portal protein	head and packaging
UHGV-0172417_42	UniRef90	UniRef90_UPI001BAAB616	phage portal protein	NA
UHGV-0172417_42	eggNOG-mapper	1232453.BAIF02000058_gene1625	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0172417_42	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0172417_42	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0172417_43	PHROG	phrog_38	terminase large subunit	head and packaging
UHGV-0172417_43	eggNOG-mapper	428127.EUBDOL_01551	chromosome segregation	NA
UHGV-0172417_43	COG	COG5410	NA	NA
UHGV-0172417_43	Structural annotation	PF17289, MF_04147, NF033889, COG5410, COG5362	NA	NA
UHGV-0172417_51	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-0172417_51	PHROG	phrog_67	DNA methyltransferase	other
UHGV-0172417_51	UniRef90	UniRef90_A0A123SP57	Methyltransferase	NA
UHGV-0172417_51	eggNOG-mapper	1123315.AUIP01000014_gene1936	DNA modification methylase DNA replication, recombination, and repair	NA
UHGV-0172417_51	PADLOC	MTase_II_00157	Type II methyltransferase	RM
UHGV-0172417_51	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0172417_51	COG	COG0863	DNA modification methylase	NA
UHGV-0172417_51	Structural annotation	PF01555, MF_01872, NF010253, COG0863	NA	NA
UHGV-0172417_54	UniRef90	UniRef90_A0A349ETZ1	Restriction endonuclease subunit M (Fragment)	NA
UHGV-0172417_54	eggNOG-mapper	1122981.AUME01000001_gene1820	restriction	NA
UHGV-0172417_54	PADLOC	MTase_II_00176	Type II methyltransferase	RM
UHGV-0172417_54	COG	COG1002	Type II restriction/modification system, endonuclease and methylase domains	NA
UHGV-0172417_57	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0172417_57	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0172417_57	UniRef90	UniRef90_W7KN38	Single-stranded DNA-binding protein	NA
UHGV-0172417_57	eggNOG-mapper	1307436.PBF_22013	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-0172417_57	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0172417_57	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0172417_57	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0172417_57	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-0172417_58	PHROG	phrog_8470	NA	unknown function
UHGV-0172417_58	UniRef90	UniRef90_A0A1H9B2X1	PcfJ-like protein	NA
UHGV-0172417_58	eggNOG-mapper	1395513.P343_08070	PcfJ-like protein	NA
UHGV-0172417_58	Pfam	PF14284	PcfJ-like protein	PcfJ
UHGV-0172417_58	Structural annotation	PF14284	NA	NA
UHGV-0172417_59	PHROG	phrog_7445	NA	unknown function
UHGV-0172417_59	UniRef90	UniRef90_A0A1T4KJD9	PcfK-like protein	NA
UHGV-0172417_59	eggNOG-mapper	742727.HMPREF9447_04085	PcfK-like protein	NA
UHGV-0172417_59	Pfam	PF14058	PcfK-like protein	PcfK
UHGV-0172417_59	Structural annotation	PF14058	NA	NA
UHGV-0172417_60	KOfam	K14060	pinR; putative DNA-invertase from lambdoid prophage Rac	NA
UHGV-0172417_60	PHROG	phrog_125	DNA invertase	DNA, RNA and nucleotide metabolism
UHGV-0172417_60	UniRef90	UniRef90_A0A7X9A543	Recombinase family protein	NA
UHGV-0172417_60	eggNOG-mapper	1278311.AUAL01000011_gene747	Resolvase, N terminal domain	NA
UHGV-0172417_60	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0172417_60	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0172417_63	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-0172417_63	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0172417_63	UniRef90	UniRef90_A0A374UPV4	Bac_DnaA domain-containing protein	NA
UHGV-0172417_63	eggNOG-mapper	1232446.BAIE02000011_gene1611	NA	NA
UHGV-0172417_63	Pfam	PF00308	Bacterial dnaA protein	Bac_DnaA
UHGV-0172417_63	COG	COG1484	DNA replication protein DnaC	NA
UHGV-0172417_63	Structural annotation	PF01695, MF_01158, NF005378, COG1484	NA	NA
UHGV-0172417_68	PHROG	phrog_2044	RNA polymerase beta subunit	DNA, RNA and nucleotide metabolism
UHGV-0172417_68	UniRef90	UniRef90_A0A2X0YZP6	NA	NA
UHGV-0172417_68	eggNOG-mapper	552396.HMPREF0863_00288	NA	NA
UHGV-0172417_68	Structural annotation	MF_00337, NF010671, COG1722	NA	NA
UHGV-0172417_69	PHROG	phrog_1891	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0172417_69	UniRef90	UniRef90_UPI00164BEE6F	HNH endonuclease	NA
UHGV-0172417_69	eggNOG-mapper	1321779.HMPREF1984_01330	HNH endonuclease	NA
UHGV-0172417_69	Pfam	PF13392	HNH endonuclease	HNH_3
UHGV-0172417_69	Structural annotation	PF13392	NA	NA
UHGV-0172417_70	PADLOC	pVip-lone	Viperins not associated with kinases	Viperin
UHGV-0172417_70	Pfam	PF04055	Radical SAM superfamily	Radical_SAM
UHGV-0172417_70	COG	COG1180	Pyruvate-formate lyase-activating enzyme	NA
UHGV-0172417_74	eggNOG-mapper	1118057.CAGX01000020_gene1638	NA	NA
UHGV-0172417_77	UniRef90	UniRef90_A0A843GST0	ASCH domain-containing protein	NA
UHGV-0172417_78	KOfam	K21919	KCTD9; BTB/POZ domain-containing protein KCTD9	NA
UHGV-0172417_78	PHROG	phrog_923	NA	unknown function
UHGV-0172417_78	Pfam	PF00805	Pentapeptide repeats (8 copies)	Pentapeptide
UHGV-0172417_78	Pfam	PF19062	NA	DUF5758
UHGV-0172417_78	Structural annotation	PF19062, PF13599, NF011744, COG1357	NA	NA
UHGV-0172417_79	eggNOG-mapper	242527.Q6V7R6_9CAUD	calcium ion binding	NA
UHGV-0172417_80	KOfam	K02338	dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]	NA