UHGV-0172426

Genome information

Genome length 43,115 bps

CDS count 73

Completeness 100.00% (complete)

geNomad score 0.9821

Prediction confidence Confident

Genome information
Genome ID	UHGV-0172426
vOTU ID	vOTU-006557
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_566753
BioSample	SAMN06233224
Country	Spain
Virus prediction confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	22
CheckV host markers	2
Recoded stop codon	No

Viral signal
geNomad score	0.9821
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	40.72
Jumbo phage	No

Genome content
Genome length	43,115 bps
GC content	52.22%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	73
CDS density	94.48%
Average CDS length	561.78 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0172426_1	KOfam	K07319	yhdJ; adenine-specific DNA-methyltransferase [EC:2.1.1.72]	NA
UHGV-0172426_1	PHROG	phrog_67	DNA methyltransferase	other
UHGV-0172426_1	UniRef90	UniRef90_A0A173XK51	Methyltransferase	NA
UHGV-0172426_1	eggNOG-mapper	1226322.HMPREF1545_02860	NA	NA
UHGV-0172426_1	PADLOC	MTase_II_00157	Type II methyltransferase	RM
UHGV-0172426_1	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0172426_1	COG	COG0863	DNA modification methylase	NA
UHGV-0172426_1	Structural annotation	PF01555, MF_01872, NF010253, COG0863	NA	NA
UHGV-0172426_4	PHROG	phrog_2562	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0172426_4	UniRef90	UniRef90_A0A6S6XAF1	NA	NA
UHGV-0172426_4	eggNOG-mapper	1291050.JAGE01000001_gene2901	NA	NA
UHGV-0172426_4	Pfam	PF14297	Lin1244/Lin1753-like, N-terminal	Lin1244_N
UHGV-0172426_4	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0172426_4	Structural annotation	PF14297, TIGR01714	NA	NA
UHGV-0172426_5	KOfam	K06167	phnP; phosphoribosyl 1,2-cyclic phosphate phosphodiesterase [EC:3.1.4.55]	NA
UHGV-0172426_5	PHROG	phrog_392	metal-dependent hydrolase	other
UHGV-0172426_5	UniRef90	UniRef90_A0A353MK18	MBL fold metallo-hydrolase	NA
UHGV-0172426_5	eggNOG-mapper	1382358.JHVN01000024_gene1693	COG1235 Metal-dependent hydrolases of the beta-lactamase superfamily I	NA
UHGV-0172426_5	Pfam	PF12706	Beta-lactamase superfamily domain	Lactamase_B_2
UHGV-0172426_5	COG	COG1235	Phosphoribosyl 1,2-cyclic phosphate phosphodiesterase	NA
UHGV-0172426_5	Structural annotation	PF02112, MF_01818, NF041851, COG1234	NA	NA
UHGV-0172426_6	PHROG	phrog_862	NA	unknown function
UHGV-0172426_6	eggNOG-mapper	1235835.C814_00380	NA	NA
UHGV-0172426_6	Structural annotation	PF05037, COG2965	NA	NA
UHGV-0172426_7	KOfam	K19171	dndD; DNA sulfur modification protein DndD	NA
UHGV-0172426_7	PHROG	phrog_10445	NA	unknown function
UHGV-0172426_7	UniRef90	UniRef90_UPI000688AB30	AAA family ATPase	NA
UHGV-0172426_7	eggNOG-mapper	1382358.JHVN01000024_gene1691	NA	NA
UHGV-0172426_7	Pfam	PF13476	AAA domain	AAA_23
UHGV-0172426_7	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0172426_7	Structural annotation	PF02463, MF_00449, NF041034, COG0419	NA	NA
UHGV-0172426_10	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0172426_10	PHROG	phrog_5817	anti-repressor Ant	transcription regulation
UHGV-0172426_10	UniRef90	UniRef90_A0A356CZA0	Oxidoreductase	NA
UHGV-0172426_10	eggNOG-mapper	1230342.CTM_17202	Phage antirepressor protein KilAC domain	NA
UHGV-0172426_10	Pfam	PF08346	AntA/AntB antirepressor	AntA
UHGV-0172426_10	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0172426_10	COG	COG3561	Phage anti-repressor protein Ant	NA
UHGV-0172426_10	Structural annotation	PF03374, PF08346, TIGR02681, COG3645, COG3561	NA	NA
UHGV-0172426_11	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0172426_11	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-0172426_11	UniRef90	UniRef90_UPI001C3C1005	Phage antirepressor KilAC domain-containing protein	NA
UHGV-0172426_11	eggNOG-mapper	568816.Acin_1403	Phage antirepressor protein KilAC domain	NA
UHGV-0172426_11	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0172426_11	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0172426_11	COG	COG3617	Prophage antirepressor	NA
UHGV-0172426_11	Structural annotation	PF03374, PF02498, COG3645, COG3617	NA	NA
UHGV-0172426_15	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0172426_15	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0172426_15	UniRef90	UniRef90_S2YNK0	HTH cro/C1-type domain-containing protein	NA
UHGV-0172426_15	eggNOG-mapper	397290.C810_05152	DNA-binding helix-turn-helix protein	NA
UHGV-0172426_15	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0172426_15	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0172426_15	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0172426_18	KOfam	K14059	int; integrase	NA
UHGV-0172426_18	PHROG	phrog_1	integrase	integration and excision
UHGV-0172426_18	UniRef90	UniRef90_A0A1C6FMQ0	Site-specific tyrosine recombinase XerC	NA
UHGV-0172426_18	eggNOG-mapper	748224.HMPREF9436_03382	Belongs to the 'phage' integrase family	NA
UHGV-0172426_18	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0172426_18	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0172426_18	Structural annotation	PF00589, PF14659, MF_01808, NF007246, COG4973	NA	NA
UHGV-0172426_21	PHROG	phrog_20016	NA	unknown function
UHGV-0172426_21	UniRef90	UniRef90_A0A285PT46	Tumour necrosis factor-like domain	NA
UHGV-0172426_21	eggNOG-mapper	1226322.HMPREF1545_00077	NA	NA
UHGV-0172426_21	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0172426_22	PHROG	phrog_16490	NA	unknown function
UHGV-0172426_22	eggNOG-mapper	658655.HMPREF0988_00917	NA	NA
UHGV-0172426_23	PHROG	phrog_22984	NA	unknown function
UHGV-0172426_24	PHROG	phrog_21718	NA	unknown function
UHGV-0172426_24	eggNOG-mapper	397290.C810_05210	NA	NA
UHGV-0172426_25	PHROG	phrog_3754	NA	unknown function
UHGV-0172426_25	eggNOG-mapper	476272.RUMHYD_01764	NA	NA
UHGV-0172426_27	PHROG	phrog_25567	NA	unknown function
UHGV-0172426_27	UniRef90	UniRef90_A0A0K9N6V9	Toxin-antitoxin system, antitoxin component, Xre family	NA
UHGV-0172426_27	eggNOG-mapper	411469.EUBHAL_00738	NA	NA
UHGV-0172426_29	AcrCatalog	cluster_29173	NA	NA
UHGV-0172426_30	UniRef90	UniRef90_A0A843IZ65	Sigma70_r4 domain-containing protein	NA
UHGV-0172426_31	PHROG	phrog_6918	holin	lysis
UHGV-0172426_31	UniRef90	UniRef90_U2S4Z6	Phage holin, LL-H family	NA
UHGV-0172426_31	eggNOG-mapper	1226322.HMPREF1545_03575	Bacteriophage holin of superfamily 6 (Holin_LLH)	NA
UHGV-0172426_31	Pfam	PF09682	Bacteriophage holin of superfamily 6 (Holin_LLH)	Phage_holin_6_1
UHGV-0172426_31	Structural annotation	PF09682, TIGR01673	NA	NA
UHGV-0172426_33	PHROG	phrog_1863	NA	unknown function
UHGV-0172426_33	eggNOG-mapper	1235797.C816_02840	NA	NA
UHGV-0172426_34	KOfam	K06381	spoIID; stage II sporulation protein D	NA
UHGV-0172426_34	PHROG	phrog_894	endolysin	lysis
UHGV-0172426_34	UniRef90	UniRef90_A0A6N2S845	Amidase enhancer	NA
UHGV-0172426_34	eggNOG-mapper	1235835.C814_01292	Ami_2	NA
UHGV-0172426_34	Pfam	PF08486	Stage II sporulation protein	SpoIID
UHGV-0172426_34	Pfam	PF08291	Peptidase M15	Peptidase_M15_3
UHGV-0172426_34	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-0172426_34	NCBIFam	TIGR02669.1	SpoIID/LytB domain-containing protein	NA
UHGV-0172426_34	COG	COG1388	LysM repeat	NA
UHGV-0172426_34	Structural annotation	PF08486, PF01471, TIGR02669, TIGR02869, COG2385, COG3409	NA	NA
UHGV-0172426_35	PHROG	phrog_18593	NA	unknown function
UHGV-0172426_35	UniRef90	UniRef90_UPI001EDF4BF9	chitinase	NA
UHGV-0172426_35	eggNOG-mapper	1226322.HMPREF1545_04028	NA	NA
UHGV-0172426_35	Pfam	PF02839	Carbohydrate-binding module family 5/12	CBM_5_12
UHGV-0172426_35	Structural annotation	PF14600	NA	NA
UHGV-0172426_38	PHROG	phrog_21765	NA	unknown function
UHGV-0172426_38	eggNOG-mapper	189425.PGRAT_19250	cellulose 1,4-beta-cellobiosidase activity	NA
UHGV-0172426_38	COG	COG5301	Phage-related tail fiber protein	NA
UHGV-0172426_39	PHROG	phrog_4311	minor head protein	head and packaging
UHGV-0172426_39	UniRef90	UniRef90_R5IIT2	Phage minor structural protein	NA
UHGV-0172426_39	eggNOG-mapper	1033744.CAEL01000029_gene1269	NA	NA
UHGV-0172426_39	Pfam	PF18994	Prophage endopeptidase tail N-terminal domain	Prophage_tailD1
UHGV-0172426_39	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0172426_39	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0172426_39	COG	COG4926	Phage-related protein	NA
UHGV-0172426_39	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0172426_41	PHROG	phrog_240	head protein	head and packaging
UHGV-0172426_41	eggNOG-mapper	1430331.EP10_10445	Belongs to the glycosyl hydrolase 8 (cellulase D) family	NA
UHGV-0172426_41	COG	COG3405	Endo-1,4-beta-D-glucanase Y	NA
UHGV-0172426_41	Structural annotation	PF12571	NA	NA
UHGV-0172426_42	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0172426_42	UniRef90	UniRef90_A0A1W1UYY4	Phage tail protein	NA
UHGV-0172426_42	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-0172426_42	NCBIFam	TIGR01633.1	distal tail protein Dit	NA
UHGV-0172426_42	COG	COG4722	Phage-related protein YomH	NA
UHGV-0172426_42	Structural annotation	PF05709, TIGR01633, COG4722	NA	NA
UHGV-0172426_43	PHROG	phrog_58	tail length tape measure protein	tail
UHGV-0172426_43	eggNOG-mapper	1123309.AQYB01000018_gene819	Phage tail tape measure protein TP901	NA
UHGV-0172426_43	COG	COG5412	Phage-related protein	NA
UHGV-0172426_44	PHROG	phrog_59	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0172426_44	UniRef90	UniRef90_A0A7D4FJN5	HNH endonuclease	NA
UHGV-0172426_44	eggNOG-mapper	1423775.BAMN01000011_gene594	HNH endonuclease domain protein	NA
UHGV-0172426_44	PADLOC	HEase_00016	homing endonuclease	RM
UHGV-0172426_44	Pfam	PF13392	HNH endonuclease	HNH_3
UHGV-0172426_44	Structural annotation	PF07453, PF13392, TIGR01453	NA	NA
UHGV-0172426_45	PHROG	phrog_6900	tail length tape measure protein	tail
UHGV-0172426_45	UniRef90	UniRef90_A0A1P8BMM1	Tail tapemeasure protein	NA
UHGV-0172426_45	eggNOG-mapper	1123312.KB904569_gene357	Phage tail tape measure protein TP901	NA
UHGV-0172426_45	COG	COG5412	Phage-related protein	NA
UHGV-0172426_48	PHROG	phrog_885	major tail protein	tail
UHGV-0172426_48	UniRef90	UniRef90_A0A843J9F0	Ig-like domain-containing protein	NA
UHGV-0172426_48	eggNOG-mapper	1504822.CCNO01000012_gene492	NA	NA
UHGV-0172426_48	Structural annotation	PF06488, TIGR01603, COG5437	NA	NA
UHGV-0172426_49	PHROG	phrog_17405	head protein	head and packaging
UHGV-0172426_49	UniRef90	UniRef90_A0A415JI88	NA	NA
UHGV-0172426_49	Structural annotation	PF11367	NA	NA
UHGV-0172426_50	PHROG	phrog_17977	NA	unknown function
UHGV-0172426_50	UniRef90	UniRef90_A0A285PT57	Phage head-tail joining protein	NA
UHGV-0172426_50	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-0172426_52	PHROG	phrog_544	major head protein	head and packaging
UHGV-0172426_52	UniRef90	UniRef90_A0A810PZM2	S-l_SbsC_C domain-containing protein	NA
UHGV-0172426_52	eggNOG-mapper	1347392.CCEZ01000005_gene1236	NA	NA
UHGV-0172426_52	Pfam	PF18316	S-layer protein SbsC C-terminal domain	S-l_SbsC_C
UHGV-0172426_52	Structural annotation	PF03864, PF18316, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0172426_53	UniRef90	UniRef90_A0A6B9SU02	Fibronectin autolysin	NA
UHGV-0172426_53	Structural annotation	PF06810	NA	NA
UHGV-0172426_54	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0172426_54	UniRef90	UniRef90_A0A3A9EIF3	HK97 gp10 family phage protein	NA
UHGV-0172426_54	eggNOG-mapper	1140001.I571_01837	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0172426_57	PHROG	phrog_115	minor head protein	head and packaging
UHGV-0172426_57	UniRef90	UniRef90_A0A810PSD3	Phage_Mu_F domain-containing protein	NA
UHGV-0172426_57	eggNOG-mapper	1504822.CCNO01000013_gene286	cell adhesion	NA
UHGV-0172426_57	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0172426_57	COG	COG2369	NA	NA
UHGV-0172426_57	Structural annotation	PF04233, PF21814, TIGR01641, COG2369	NA	NA
UHGV-0172426_58	PHROG	phrog_64	portal protein	head and packaging
UHGV-0172426_58	UniRef90	UniRef90_UPI0018A8A301	phage portal protein	NA
UHGV-0172426_58	eggNOG-mapper	673376.F2VHW1_9CAUD	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0172426_58	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0172426_58	Structural annotation	PF05133, MF_04120, TIGR01538, COG3567	NA	NA
UHGV-0172426_59	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0172426_59	PHROG	phrog_10250	NA	unknown function
UHGV-0172426_59	UniRef90	UniRef90_A0A3D3Y0N9	PBSX family phage terminase large subunit	NA
UHGV-0172426_59	eggNOG-mapper	1226322.HMPREF1545_00043	Phage terminase large subunit	NA
UHGV-0172426_59	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0172426_59	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0172426_59	COG	COG1783	Phage terminase large subunit	NA
UHGV-0172426_59	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0172426_61	PHROG	phrog_842	beta-glucosyl-HMC-alpha-glucosyltransferase	other
UHGV-0172426_61	UniRef90	UniRef90_A0A516LJ12	Putative beta-glucosyl-HMC-alpha-glucosyl-transferase	NA
UHGV-0172426_61	eggNOG-mapper	508419.F8J156_9CAUD	NA	NA
UHGV-0172426_61	Pfam	PF20691	TET-Associated Glycosyltransferase	TAGT
UHGV-0172426_61	Structural annotation	PF20691, NF041865, COG1216	NA	NA
UHGV-0172426_62	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-0172426_62	PHROG	phrog_620	ParB-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0172426_62	UniRef90	UniRef90_A0A417WD62	DNA methylase	NA
UHGV-0172426_62	eggNOG-mapper	1399942.U3PCR3_9CAUD	helicase activity	NA
UHGV-0172426_62	PADLOC	MTase_II_00015	Type II methyltransferase	RM
UHGV-0172426_62	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0172426_62	Structural annotation	PF02195, TIGR00180, COG5119	NA	NA
UHGV-0172426_63	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0172426_63	Structural annotation	PF05263, TIGR01636	NA	NA
UHGV-0172426_64	PHROG	phrog_6721	NA	unknown function
UHGV-0172426_64	eggNOG-mapper	411460.RUMTOR_01369	NA	NA
UHGV-0172426_64	Structural annotation	PF02511, MF_01408, TIGR02170, COG1351	NA	NA
UHGV-0172426_67	PHROG	phrog_478	site-specific recombination directionality factor RDF	integration and excision
UHGV-0172426_67	UniRef90	UniRef90_R6E548	Prophage pi1 protein 29	NA
UHGV-0172426_67	eggNOG-mapper	521003.COLINT_02327	NA	NA
UHGV-0172426_69	eggNOG-mapper	398578.Daci_1924	NA	NA
UHGV-0172426_70	PHROG	phrog_20532	NA	unknown function
UHGV-0172426_70	Pfam	PF00132	Bacterial transferase hexapeptide (six repeats)	Hexapep