UHGV-0172432

Genome information

Genome length 46,018 bps

CDS count 75

Completeness 99.90% (high-quality)

geNomad score 0.9799

Prediction confidence Confident

Genome information
Genome ID	UHGV-0172432
vOTU ID	vOTU-065008
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_589214
BioSample	SAMN09781775
Country	Madagascar
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	21
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9799
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	56.79
Jumbo phage	No

Genome content
Genome length	46,018 bps
GC content	45.02%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	75
CDS density	89.96%
Average CDS length	555.84 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0172432_1	PHROG	phrog_27197	NA	unknown function
UHGV-0172432_1	eggNOG-mapper	886882.PPSC2_p0048	regulation of DNA-templated transcription, elongation	NA
UHGV-0172432_1	COG	COG5164	Transcription elongation factor SPT5	NA
UHGV-0172432_1	Structural annotation	NF007410	NA	NA
UHGV-0172432_4	PHROG	phrog_155	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0172432_4	UniRef90	UniRef90_A0A396QXQ1	Recombinase	NA
UHGV-0172432_4	eggNOG-mapper	386415.NT01CX_2192	ERF superfamily	NA
UHGV-0172432_4	Pfam	PF04404	ERF superfamily	ERF
UHGV-0172432_4	Structural annotation	PF04404, TIGR00607, COG4712	NA	NA
UHGV-0172432_5	PHROG	phrog_398	NA	unknown function
UHGV-0172432_5	UniRef90	UniRef90_UPI00068C968F	putative HNHc nuclease	NA
UHGV-0172432_5	eggNOG-mapper	33035.JPJF01000122_gene2462	Putative HNHc nuclease	NA
UHGV-0172432_5	Pfam	PF16784	Putative HNHc nuclease	HNHc_6
UHGV-0172432_5	Structural annotation	PF16784	NA	NA
UHGV-0172432_6	PHROG	phrog_244	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0172432_6	eggNOG-mapper	887929.HMP0721_1279	NA	NA
UHGV-0172432_6	Structural annotation	PF01870, MF_01490, NF040854, COG1591	NA	NA
UHGV-0172432_7	PHROG	phrog_11769	NA	unknown function
UHGV-0172432_7	UniRef90	UniRef90_A0A416S3A2	Phage_rep_org_N domain-containing protein	NA
UHGV-0172432_7	eggNOG-mapper	411470.RUMGNA_02197	phage replisome	NA
UHGV-0172432_7	Pfam	PF09681	N-terminal phage replisome organiser (Phage_rep_org_N)	Phage_rep_org_N
UHGV-0172432_7	NCBIFam	TIGR01714.1	phage replisome organizer, putative, N-terminal region	NA
UHGV-0172432_7	Structural annotation	PF09681, TIGR01714, COG3388	NA	NA
UHGV-0172432_10	KOfam	K00390	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	NA
UHGV-0172432_10	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0172432_10	UniRef90	UniRef90_A0A3R6M557	PAPS_reduct domain-containing protein	NA
UHGV-0172432_10	eggNOG-mapper	1235800.C819_02256	Phosphoadenosine phosphosulfate reductase family	NA
UHGV-0172432_10	Pfam	PF01507	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
UHGV-0172432_10	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0172432_10	Structural annotation	PF01507, MF_00063, TIGR00434, COG0175	NA	NA
UHGV-0172432_11	eggNOG-mapper	887325.HMPREF0381_0090	NA	NA
UHGV-0172432_13	PHROG	phrog_4601	NA	unknown function
UHGV-0172432_15	eggNOG-mapper	476272.RUMHYD_01751	NA	NA
UHGV-0172432_17	PHROG	phrog_8680	NA	unknown function
UHGV-0172432_17	UniRef90	UniRef90_A0A416S3B0	NA	NA
UHGV-0172432_17	eggNOG-mapper	411470.RUMGNA_02208	NA	NA
UHGV-0172432_17	Pfam	PF14386	NA	DUF4417
UHGV-0172432_17	Structural annotation	PF14386	NA	NA
UHGV-0172432_18	eggNOG-mapper	706437.HMPREF0813_02005	NA	NA
UHGV-0172432_20	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0172432_20	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0172432_20	UniRef90	UniRef90_A0A416S378	PBSX family phage terminase large subunit	NA
UHGV-0172432_20	eggNOG-mapper	33035.JPJF01000106_gene3136	Terminase small subunit	NA
UHGV-0172432_20	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0172432_20	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0172432_20	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0172432_20	COG	COG1783	Phage terminase large subunit	NA
UHGV-0172432_20	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0172432_22	PHROG	phrog_533	portal protein	head and packaging
UHGV-0172432_22	UniRef90	UniRef90_A0A1C6CDM8	Phage portal protein, putative, A118 family	NA
UHGV-0172432_22	eggNOG-mapper	33035.JPJF01000106_gene3135	phage minor capsid protein	NA
UHGV-0172432_22	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0172432_23	PHROG	phrog_1129	holin	lysis
UHGV-0172432_23	UniRef90	UniRef90_A0A416S3E1	Enolase	NA
UHGV-0172432_23	eggNOG-mapper	742740.HMPREF9474_03522	NA	NA
UHGV-0172432_23	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-0172432_23	Structural annotation	PF06946	NA	NA
UHGV-0172432_24	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0172432_24	UniRef90	UniRef90_A0A416S3D5	Phage capsid protein	NA
UHGV-0172432_24	eggNOG-mapper	476272.RUMHYD_01761	Phage minor capsid protein 2	NA
UHGV-0172432_24	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0172432_24	COG	COG2369	NA	NA
UHGV-0172432_24	Structural annotation	PF06152	NA	NA
UHGV-0172432_25	UniRef90	UniRef90_A0A416S3A4	CTP synthase	NA
UHGV-0172432_25	eggNOG-mapper	476272.RUMHYD_01766	NA	NA
UHGV-0172432_26	PHROG	phrog_21718	NA	unknown function
UHGV-0172432_26	eggNOG-mapper	1235790.C805_00058	NA	NA
UHGV-0172432_28	eggNOG-mapper	476272.RUMHYD_01770	NA	NA
UHGV-0172432_30	PHROG	phrog_20016	NA	unknown function
UHGV-0172432_30	UniRef90	UniRef90_A0A316MV88	BclA_C domain-containing protein	NA
UHGV-0172432_30	eggNOG-mapper	397290.C810_05214	NA	NA
UHGV-0172432_30	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0172432_31	Structural annotation	PF00210, MF_01441, NF011597, COG1528	NA	NA
UHGV-0172432_33	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0172432_33	UniRef90	UniRef90_UPI001C0EBA51	phage scaffolding protein	NA
UHGV-0172432_33	eggNOG-mapper	742765.HMPREF9457_02126	COG NOG36366 non supervised orthologous group	NA
UHGV-0172432_33	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0172432_34	PHROG	phrog_247	major head protein	head and packaging
UHGV-0172432_34	UniRef90	UniRef90_UPI001BA5448B	major capsid protein	NA
UHGV-0172432_34	eggNOG-mapper	33035.JPJF01000106_gene3132	NA	NA
UHGV-0172432_34	Structural annotation	PF20036, MF_04113, TIGR04387, COG4653	NA	NA
UHGV-0172432_35	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0172432_35	eggNOG-mapper	476272.RUMHYD_01778	NA	NA
UHGV-0172432_38	PHROG	phrog_3366	NA	unknown function
UHGV-0172432_38	eggNOG-mapper	476272.RUMHYD_01779	NA	NA
UHGV-0172432_38	Structural annotation	PF20536, COG5614	NA	NA
UHGV-0172432_39	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0172432_39	UniRef90	UniRef90_UPI0008B4CFF0	minor capsid protein	NA
UHGV-0172432_39	eggNOG-mapper	476272.RUMHYD_01780	NA	NA
UHGV-0172432_39	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0172432_39	Structural annotation	PF11114	NA	NA
UHGV-0172432_40	PHROG	phrog_3266	tail completion	connector
UHGV-0172432_40	eggNOG-mapper	476272.RUMHYD_01781	NA	NA
UHGV-0172432_40	Structural annotation	PF12691	NA	NA
UHGV-0172432_41	PHROG	phrog_3099	NA	unknown function
UHGV-0172432_41	eggNOG-mapper	476272.RUMHYD_01782	NA	NA
UHGV-0172432_41	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0172432_42	PHROG	phrog_11299	NA	unknown function
UHGV-0172432_42	eggNOG-mapper	33035.JPJF01000106_gene3125	NA	NA
UHGV-0172432_42	Structural annotation	PF10666	NA	NA
UHGV-0172432_43	PHROG	phrog_706	NA	unknown function
UHGV-0172432_43	UniRef90	UniRef90_UPI00156F9D1C	Gp15 family bacteriophage protein	NA
UHGV-0172432_43	eggNOG-mapper	476272.RUMHYD_01784	Bacteriophage Gp15 protein	NA
UHGV-0172432_43	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0172432_43	Structural annotation	PF06854	NA	NA
UHGV-0172432_44	KOfam	K10421	CLIP1, RSN; CAP-Gly domain-containing linker protein 1	NA
UHGV-0172432_44	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0172432_44	UniRef90	UniRef90_A0A173R880	Phage-related protein	NA
UHGV-0172432_44	eggNOG-mapper	476272.RUMHYD_01785	phage tail tape measure protein	NA
UHGV-0172432_44	COG	COG1511	NA	NA
UHGV-0172432_44	Structural annotation	PF11172	NA	NA
UHGV-0172432_45	PHROG	phrog_1194	NA	unknown function
UHGV-0172432_45	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0172432_46	PHROG	phrog_6616	tail protein	tail
UHGV-0172432_46	UniRef90	UniRef90_UPI0015714EA8	tail fiber domain-containing protein	NA
UHGV-0172432_46	eggNOG-mapper	1121866.AUGK01000003_gene1439	Phage minor structural protein	NA
UHGV-0172432_46	Pfam	PF13884	Chaperone of endosialidase	Peptidase_S74
UHGV-0172432_46	COG	COG4926	Phage-related protein	NA
UHGV-0172432_46	Structural annotation	PF05113, PF20010, NF033848, COG3500	NA	NA
UHGV-0172432_47	eggNOG-mapper	349123.Lreu23DRAFT_3172	NA	NA
UHGV-0172432_49	UniRef90	UniRef90_UPI0013141798	ribbon-helix-helix protein, CopG family	NA
UHGV-0172432_49	Pfam	PF01402	Ribbon-helix-helix protein, copG family	RHH_1
UHGV-0172432_49	Structural annotation	PF01402, NF041793, COG4710	NA	NA
UHGV-0172432_51	PHROG	phrog_199	holin	lysis
UHGV-0172432_51	UniRef90	UniRef90_A0A373MZ88	Holin	NA
UHGV-0172432_51	eggNOG-mapper	411460.RUMTOR_02100	NA	NA
UHGV-0172432_51	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0172432_51	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0172432_51	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0172432_52	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0172432_52	PHROG	phrog_3088	amidase	lysis
UHGV-0172432_52	UniRef90	UniRef90_A0A174B7N2	N-acetylmuramoyl-L-alanine amidase CwlH	NA
UHGV-0172432_52	eggNOG-mapper	742740.HMPREF9474_01195	Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase	NA
UHGV-0172432_52	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0172432_52	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-0172432_52	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0172432_52	Structural annotation	PF01510, PF18342, MF_04111, NF008758, COG5632	NA	NA
UHGV-0172432_53	AcrCatalog	cluster_37488	NA	NA
UHGV-0172432_54	PHROG	phrog_13890	NA	unknown function
UHGV-0172432_54	UniRef90	UniRef90_A0A7X5I8W7	Arc family DNA-binding protein	NA
UHGV-0172432_54	eggNOG-mapper	411468.CLOSCI_01452	NA	NA
UHGV-0172432_55	UniRef90	UniRef90_A0A1Q9J4Y8	HTH cro/C1-type domain-containing protein	NA
UHGV-0172432_56	UniRef90	UniRef90_A0A174N9H8	Putative zinc finger/helix-turn-helix protein, YgiT family	NA
UHGV-0172432_58	PHROG	phrog_13890	NA	unknown function
UHGV-0172432_58	UniRef90	UniRef90_A0A7X5I8W7	Arc family DNA-binding protein	NA
UHGV-0172432_58	eggNOG-mapper	411902.CLOBOL_03783	NA	NA
UHGV-0172432_59	eggNOG-mapper	742738.HMPREF9460_04058	NA	NA
UHGV-0172432_60	KOfam	K14059	int; integrase	NA
UHGV-0172432_60	PHROG	phrog_1	integrase	integration and excision
UHGV-0172432_60	UniRef90	UniRef90_A0A416RX95	Site-specific integrase	NA
UHGV-0172432_60	eggNOG-mapper	33035.JPJF01000071_gene4457	Phage integrase family	NA
UHGV-0172432_60	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0172432_60	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0172432_60	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-0172432_61	PHROG	phrog_10292	NA	unknown function
UHGV-0172432_61	UniRef90	UniRef90_A0A416RWX8	TM2 domain-containing protein	NA
UHGV-0172432_61	eggNOG-mapper	665956.HMPREF1032_00562	TM2 domain	NA
UHGV-0172432_61	Pfam	PF05154	TM2 domain	TM2
UHGV-0172432_61	COG	COG2314	NA	NA
UHGV-0172432_61	Structural annotation	PF05154, PF12773, MF_00788, NF003161	NA	NA
UHGV-0172432_62	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0172432_62	UniRef90	UniRef90_A0A416RX34	XRE family transcriptional regulator	NA
UHGV-0172432_62	eggNOG-mapper	742765.HMPREF9457_02739	NA	NA
UHGV-0172432_62	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0172432_62	Structural annotation	PF13560, NF041951, COG1396	NA	NA
UHGV-0172432_64	KOfam	K18830	pezA; HTH-type transcriptional regulator / antitoxin PezA	NA
UHGV-0172432_64	PHROG	phrog_2967	transcriptional regulator	transcription regulation
UHGV-0172432_64	UniRef90	UniRef90_A0A416RWS4	XRE family transcriptional regulator	NA
UHGV-0172432_64	eggNOG-mapper	397291.C804_03448	Helix-turn-helix XRE-family like proteins	NA
UHGV-0172432_64	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0172432_64	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0172432_64	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0172432_69	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0172432_69	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-0172432_69	UniRef90	UniRef90_A0A416ZL48	Bro-N domain-containing protein	NA
UHGV-0172432_69	eggNOG-mapper	1122146.AUHP01000010_gene1023	BRO family, N-terminal domain	NA
UHGV-0172432_69	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0172432_69	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0172432_69	COG	COG3617	Prophage antirepressor	NA
UHGV-0172432_69	Structural annotation	PF03374, PF02498, TIGR02681, COG3645	NA	NA
UHGV-0172432_70	eggNOG-mapper	596152.DesU5LDRAFT_1910	NA	NA
UHGV-0172432_70	Structural annotation	PF03787, TIGR02581, COG1604	NA	NA
UHGV-0172432_71	PHROG	phrog_3377	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0172432_71	UniRef90	UniRef90_UPI001C3AE824	HNH endonuclease	NA
UHGV-0172432_71	eggNOG-mapper	86416.Clopa_4295	NA	NA
UHGV-0172432_75	PHROG	phrog_4433	NA	unknown function
UHGV-0172432_75	UniRef90	UniRef90_UPI001C00F934	pentapeptide repeat-containing protein	NA
UHGV-0172432_75	eggNOG-mapper	445970.ALIPUT_01592	DNA-templated transcription, initiation	NA
UHGV-0172432_75	COG	COG1595	DNA-directed RNA polymerase specialized sigma subunit, sigma24 family	NA