UHGV-0172448

Genome information

Genome length 19,604 bps

CDS count 28

Completeness 94.82% (high-quality)

geNomad score 0.9805

Prediction confidence Confident

Genome information
Genome ID	UHGV-0172448
vOTU ID	vOTU-064151
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_586059
BioSample	NA
Country	Madagascar
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	94.82% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	10
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9805
Virus hallmark genes (geNomad)	5
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	31.18
Jumbo phage	No

Genome content
Genome length	19,604 bps
GC content	43.96%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	28
CDS density	89.04%
Average CDS length	624.54 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0172448_1	PHROG	phrog_20911	tail spike protein	tail
UHGV-0172448_1	Pfam	PF12708	Pectate lyase superfamily protein	Pectate_lyase_3
UHGV-0172448_1	COG	COG5434	Polygalacturonase	NA
UHGV-0172448_3	Structural annotation	PF17900	NA	NA
UHGV-0172448_4	PHROG	phrog_5472	lower collar	tail
UHGV-0172448_5	PHROG	phrog_2038	upper collar connector	connector
UHGV-0172448_5	UniRef90	UniRef90_Q9FZW5	Head-tail connector (Portal protein)	NA
UHGV-0172448_5	eggNOG-mapper	10747.Q37995_BPCP1	Phage Connector (GP10)	NA
UHGV-0172448_5	Pfam	PF05352	Phage Connector (GP10)	Phage_connector
UHGV-0172448_5	Structural annotation	PF05352, TIGR01538, COG4695	NA	NA
UHGV-0172448_6	KOfam	K19304	mepM; murein DD-endopeptidase [EC:3.4.24.-]	NA
UHGV-0172448_6	PHROG	phrog_3578	metallo-endopeptidase	other
UHGV-0172448_6	eggNOG-mapper	698758.AXY_02310	Peptidase family M23	NA
UHGV-0172448_6	Pfam	PF01551	Peptidase family M23	Peptidase_M23
UHGV-0172448_6	COG	COG0739	Murein DD-endopeptidase MepM and murein hydrolase activator NlpD, contains LysM domain	NA
UHGV-0172448_6	Structural annotation	PF01551, NF041208, COG0739	NA	NA
UHGV-0172448_7	PHROG	phrog_2248	tail protein	tail
UHGV-0172448_7	UniRef90	UniRef90_A0A843GL83	Caud_tail_N domain-containing protein	NA
UHGV-0172448_7	eggNOG-mapper	12345.Q9FZW6_BPGA1	NA	NA
UHGV-0172448_7	Pfam	PF16838	Caudoviral major tail protein N-terminus	Caud_tail_N
UHGV-0172448_7	Pfam	PF20934	Bacillus phage phi29, Tail knob protein gp9, C-terminal domain	phi29_gp9_C
UHGV-0172448_7	Structural annotation	PF20934, PF16838	NA	NA
UHGV-0172448_8	PHROG	phrog_2006	major head protein	head and packaging
UHGV-0172448_8	UniRef90	UniRef90_A0A843GX77	Ig-like domain-containing protein	NA
UHGV-0172448_8	eggNOG-mapper	10756.CAPSD_BPPH2	viral capsid	NA
UHGV-0172448_8	Structural annotation	PF21703, MF_04119, TIGR04387, COG1659	NA	NA
UHGV-0172448_9	Structural annotation	PF11418	NA	NA
UHGV-0172448_10	KOfam	K08640	E3.4.17.14; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14]	NA
UHGV-0172448_10	PHROG	phrog_894	endolysin	lysis
UHGV-0172448_10	UniRef90	UniRef90_A0A1Y3TQ65	Peptidase_M15_3 domain-containing protein	NA
UHGV-0172448_10	eggNOG-mapper	657322.FPR_27200	Peptidase M15A	NA
UHGV-0172448_10	Pfam	PF08291	Peptidase M15	Peptidase_M15_3
UHGV-0172448_10	COG	COG3108	NA	NA
UHGV-0172448_10	Structural annotation	PF05951, COG3108	NA	NA
UHGV-0172448_11	PHROG	phrog_199	holin	lysis
UHGV-0172448_11	UniRef90	UniRef90_A0A7K3XW11	Holin	NA
UHGV-0172448_11	eggNOG-mapper	1235794.C811_00437	Bacteriophage holin family	NA
UHGV-0172448_11	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0172448_11	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0172448_11	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0172448_12	PHROG	phrog_2150	terminase	head and packaging
UHGV-0172448_12	UniRef90	UniRef90_A0A843HRH6	Phage DNA encapsidation protein	NA
UHGV-0172448_12	Pfam	PF05894	Podovirus DNA encapsidation protein (Gp16)	Podovirus_Gp16
UHGV-0172448_12	Structural annotation	PF05894, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0172448_13	Structural annotation	PF11302, MF_00085, NF003076, COG0231	NA	NA
UHGV-0172448_21	KOfam	K21237	gp2; Podoviridae DNA polymerase [EC:2.7.7.7]	NA
UHGV-0172448_21	PHROG	phrog_1907	DNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-0172448_21	UniRef90	UniRef90_A0A077ZQ14	DNA-directed DNA polymerase	NA
UHGV-0172448_21	eggNOG-mapper	10756.DPOL_BPPH2	DNA polymerase type B, organellar and viral	NA
UHGV-0172448_21	Pfam	PF03175	DNA polymerase type B, organellar and viral	DNA_pol_B_2
UHGV-0172448_21	Structural annotation	PF03175, MF_04055, NF004415, COG0417	NA	NA
UHGV-0172448_23	Pfam	PF17427	Phage Single-stranded DNA-binding protein	Phi29_Phage_SSB
UHGV-0172448_23	Structural annotation	PF17427	NA	NA
UHGV-0172448_24	Structural annotation	PF17548	NA	NA