UHGV-0172457

Genome information

Genome length 36,478 bps

CDS count 48

Completeness 60.61% (medium-quality)

geNomad score 0.9825

Prediction confidence Confident

Genome information
Genome ID	UHGV-0172457
vOTU ID	vOTU-028607
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_580072
BioSample	NA
Country	Madagascar
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	60.61% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	11
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9825
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	29.71
Jumbo phage	No

Genome content
Genome length	36,478 bps
GC content	41.69%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	48
CDS density	86.44%
Average CDS length	659.06 bps
tRNA count	2
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0172457_1	PHROG	phrog_14105	NA	unknown function
UHGV-0172457_1	UniRef90	UniRef90_UPI001D0F7ECA	pentapeptide repeat-containing protein	NA
UHGV-0172457_1	eggNOG-mapper	742740.HMPREF9474_02379	dextransucrase activity	NA
UHGV-0172457_1	Pfam	PF01469	Pentapeptide repeats (8 copies)	Pentapeptide_2
UHGV-0172457_1	COG	COG5263	Glucan-binding domain (YG repeat)	NA
UHGV-0172457_4	PHROG	phrog_4608	anti-repressor	transcription regulation
UHGV-0172457_4	UniRef90	UniRef90_A0A373NRG3	ORF6N domain-containing protein	NA
UHGV-0172457_4	eggNOG-mapper	926561.KB900622_gene670	ORF6N domain	NA
UHGV-0172457_4	Pfam	PF10543	ORF6N domain	ORF6N
UHGV-0172457_4	COG	COG3561	Phage anti-repressor protein Ant	NA
UHGV-0172457_4	Structural annotation	PF08346, TIGR02681, COG3561	NA	NA
UHGV-0172457_5	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0172457_5	UniRef90	UniRef90_UPI00046674E5	helix-turn-helix domain-containing protein	NA
UHGV-0172457_5	eggNOG-mapper	349123.Lreu23DRAFT_3080	Helix-turn-helix XRE-family like proteins	NA
UHGV-0172457_5	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0172457_5	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0172457_6	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0172457_6	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0172457_6	UniRef90	UniRef90_A0A412SB20	XRE family transcriptional regulator	NA
UHGV-0172457_6	eggNOG-mapper	411462.DORLON_00819	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0172457_6	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0172457_6	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0172457_6	Structural annotation	PF12844, MF_00535, NF041951, COG3655	NA	NA
UHGV-0172457_7	Structural annotation	PF18963	NA	NA
UHGV-0172457_9	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0172457_9	PHROG	phrog_12727	endolysin	lysis
UHGV-0172457_9	UniRef90	UniRef90_A0A1Y4IK94	SPOR domain-containing protein	NA
UHGV-0172457_9	eggNOG-mapper	411490.ANACAC_00597	Cell wall hydrolase autolysin	NA
UHGV-0172457_9	Pfam	PF01832	Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase	Glucosaminidase
UHGV-0172457_9	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-0172457_9	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0172457_9	Structural annotation	PF01832, PF08230, NF038016, TIGR02594, COG1705, COG4322	NA	NA
UHGV-0172457_10	eggNOG-mapper	742735.HMPREF9467_00753	NA	NA
UHGV-0172457_10	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0172457_11	PHROG	phrog_20274	NA	unknown function
UHGV-0172457_11	UniRef90	UniRef90_A0A1C5ZRD7	Predicted membrane protein	NA
UHGV-0172457_11	eggNOG-mapper	1235799.C818_04238	Putative ABC-transporter type IV	NA
UHGV-0172457_11	Pfam	PF06541	Putative ABC-transporter type IV	ABC_trans_CmpB
UHGV-0172457_11	COG	COG4905	NA	NA
UHGV-0172457_11	Structural annotation	PF06541, COG4905	NA	NA
UHGV-0172457_13	eggNOG-mapper	397291.C804_01137	NA	NA
UHGV-0172457_13	Pfam	PF09479	Listeria-Bacteroides repeat domain (List_Bact_rpt)	Flg_new
UHGV-0172457_14	PHROG	phrog_18725	NA	unknown function
UHGV-0172457_14	eggNOG-mapper	585501.HMPREF6123_0822	NA	NA
UHGV-0172457_15	PHROG	phrog_13879	NA	unknown function
UHGV-0172457_15	eggNOG-mapper	1304866.K413DRAFT_0774	NA	NA
UHGV-0172457_15	Structural annotation	PF03256, PF16466, PF13550, MF_00813, NF033848, COG3500	NA	NA
UHGV-0172457_16	PHROG	phrog_1194	NA	unknown function
UHGV-0172457_16	eggNOG-mapper	1298920.KI911353_gene4840	NA	NA
UHGV-0172457_16	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0172457_17	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0172457_17	eggNOG-mapper	411902.CLOBOL_00126	NA	NA
UHGV-0172457_17	COG	COG5283	Phage-related tail protein	NA
UHGV-0172457_19	Structural annotation	PF16478	NA	NA
UHGV-0172457_20	eggNOG-mapper	476272.RUMHYD_01968	NA	NA
UHGV-0172457_20	Structural annotation	PF16463, TIGR02241, COG5437	NA	NA
UHGV-0172457_21	Structural annotation	PF05657	NA	NA
UHGV-0172457_22	eggNOG-mapper	476272.RUMHYD_01963	NA	NA
UHGV-0172457_23	eggNOG-mapper	1298920.KI911353_gene2656	NA	NA
UHGV-0172457_23	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-0172457_24	PHROG	phrog_443	holin	lysis
UHGV-0172457_24	UniRef90	UniRef90_UPI0009B98E42	holin	NA
UHGV-0172457_24	eggNOG-mapper	1235797.C816_04172	Putative lactococcus lactis phage r1t holin	NA
UHGV-0172457_24	Pfam	PF16945	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
UHGV-0172457_24	Structural annotation	PF16945	NA	NA
UHGV-0172457_25	PHROG	phrog_1863	NA	unknown function
UHGV-0172457_25	eggNOG-mapper	1292035.H476_3392	NA	NA
UHGV-0172457_26	eggNOG-mapper	397290.C810_01402	NA	NA
UHGV-0172457_27	UniRef90	UniRef90_A0A416G2T8	Rho_N domain-containing protein	NA
UHGV-0172457_27	Pfam	PF07498	Rho termination factor, N-terminal domain	Rho_N
UHGV-0172457_27	Structural annotation	PF21169	NA	NA
UHGV-0172457_28	PHROG	phrog_29	major head protein	head and packaging
UHGV-0172457_28	UniRef90	UniRef90_A0A173UF26	Phage major capsid protein E	NA
UHGV-0172457_28	eggNOG-mapper	1347368.HG964404_gene4993	Phage major capsid protein E	NA
UHGV-0172457_28	Pfam	PF03864	Phage major capsid protein E	Phage_cap_E
UHGV-0172457_28	Structural annotation	PF03864, MF_04133, NF041162, COG4653	NA	NA
UHGV-0172457_29	PHROG	phrog_909	major head protein	head and packaging
UHGV-0172457_29	UniRef90	UniRef90_R7BGI8	Phage major capsid protein	NA
UHGV-0172457_29	eggNOG-mapper	1497679.EP56_02915	NA	NA
UHGV-0172457_30	UniRef90	UniRef90_R6C0B6	Phage capsid scaffolding protein	NA
UHGV-0172457_31	PHROG	phrog_859	portal protein	head and packaging
UHGV-0172457_31	UniRef90	UniRef90_A0A416G2H7	Phage_Mu_F domain-containing protein	NA
UHGV-0172457_31	eggNOG-mapper	1207076.ALAT01000105_gene1902	head morphogenesis protein, SPP1	NA
UHGV-0172457_31	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0172457_31	COG	COG2369	NA	NA
UHGV-0172457_31	Structural annotation	PF04233, TIGR01641	NA	NA
UHGV-0172457_32	PHROG	phrog_1382	NA	unknown function
UHGV-0172457_32	eggNOG-mapper	33035.JPJF01000043_gene998	NA	NA
UHGV-0172457_33	eggNOG-mapper	457412.RSAG_04672	NA	NA
UHGV-0172457_34	KOfam	K00986	ltrA; RNA-directed DNA polymerase [EC:2.7.7.49]	NA
UHGV-0172457_34	PHROG	phrog_1423	Reverse transcriptase	DNA, RNA and nucleotide metabolism
UHGV-0172457_34	UniRef90	UniRef90_UPI00156F87C5	RNA-directed DNA polymerase	NA
UHGV-0172457_34	eggNOG-mapper	33035.JPJF01000043_gene1000	Reverse transcriptase (RNA-dependent DNA polymerase)	NA
UHGV-0172457_34	PADLOC	icity0040	RT (reverse transcriptase)	CRISPR-CAS
UHGV-0172457_34	Pfam	PF00078	Reverse transcriptase (RNA-dependent DNA polymerase)	RVT_1
UHGV-0172457_34	COG	COG3344	Retron-type reverse transcriptase	NA
UHGV-0172457_34	Structural annotation	PF00078, MF_04065, TIGR04416, COG3344	NA	NA
UHGV-0172457_35	PHROG	phrog_17147	NA	unknown function
UHGV-0172457_35	UniRef90	UniRef90_A0A374JQW7	NA	NA
UHGV-0172457_35	eggNOG-mapper	33035.JPJF01000043_gene1001	NA	NA
UHGV-0172457_37	PHROG	phrog_64	portal protein	head and packaging
UHGV-0172457_37	UniRef90	UniRef90_A0A416G2F2	Phage portal protein	NA
UHGV-0172457_37	eggNOG-mapper	1298920.KI911353_gene2663	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0172457_37	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0172457_37	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0172457_38	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0172457_38	UniRef90	UniRef90_A0A352SH29	RNA polymerase subunit sigma-70 (Fragment)	NA
UHGV-0172457_38	eggNOG-mapper	97138.C820_00221	sigma factor activity	NA
UHGV-0172457_38	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0172457_38	Structural annotation	PF07374, MF_00674, NF008895, COG1191	NA	NA
UHGV-0172457_39	PHROG	phrog_38	terminase large subunit	head and packaging
UHGV-0172457_39	UniRef90	UniRef90_A0A4Q5C857	Terminase_6C domain-containing protein	NA
UHGV-0172457_39	eggNOG-mapper	397290.C810_01390	chromosome segregation	NA
UHGV-0172457_39	COG	COG5410	NA	NA
UHGV-0172457_39	Structural annotation	PF17289, PF04466, MF_04147, NF033889, COG5410, COG5362	NA	NA
UHGV-0172457_40	PHROG	phrog_229	MazG-like pyrophosphatase	other
UHGV-0172457_40	UniRef90	UniRef90_D7GNT7	MazG nucleotide pyrophosphohydrolase domain	NA
UHGV-0172457_40	eggNOG-mapper	428125.CLOLEP_01391	MazG nucleotide pyrophosphohydrolase domain	NA
UHGV-0172457_40	Pfam	PF03819	MazG nucleotide pyrophosphohydrolase domain	MazG
UHGV-0172457_40	COG	COG1694	NTP pyrophosphatase, house-cleaning of non-canonical NTPs	NA
UHGV-0172457_40	Structural annotation	PF03819, MF_01020, NF001613, COG0140	NA	NA
UHGV-0172457_42	PHROG	phrog_850	RNA-binding protein	DNA, RNA and nucleotide metabolism
UHGV-0172457_42	UniRef90	UniRef90_A0A417AUN2	NA	NA
UHGV-0172457_42	eggNOG-mapper	476272.RUMHYD_01913	NA	NA
UHGV-0172457_42	Pfam	PF11443	NA	DUF2828
UHGV-0172457_42	COG	COG2304	Secreted protein containing bacterial Ig-like domain and vWFA domain	NA
UHGV-0172457_42	Structural annotation	PF11443, MF_01340, COG2304	NA	NA
UHGV-0172457_43	eggNOG-mapper	397290.C810_01353	NA	NA
UHGV-0172457_45	UniRef90	UniRef90_A0A3E5AKX4	XRE family transcriptional regulator	NA
UHGV-0172457_45	eggNOG-mapper	1235799.C818_04243	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0172457_45	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0172457_45	Structural annotation	PF13443, NF000090, COG3655	NA	NA
UHGV-0172457_47	Structural annotation	PF12993	NA	NA