UHGV-0172462

Genome information

Genome length 43,747 bps

CDS count 58

Completeness 82.32% (medium-quality)

geNomad score 0.9805

Prediction confidence Confident

Genome information
Genome ID	UHGV-0172462
vOTU ID	vOTU-028608
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_580067
BioSample	NA
Country	Madagascar
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	82.32% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	14
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9805
Virus hallmark genes (geNomad)	6
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	27.31
Jumbo phage	No

Genome content
Genome length	43,747 bps
GC content	44.65%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	58
CDS density	93.16%
Average CDS length	706.03 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0172462_3	PHROG	phrog_10691	NA	unknown function
UHGV-0172462_3	UniRef90	UniRef90_A0A316S9L9	Helicase ATP-binding domain-containing protein	NA
UHGV-0172462_3	eggNOG-mapper	1009370.ALO_12301	Type III restriction enzyme, res subunit	NA
UHGV-0172462_3	Pfam	PF01464	Transglycosylase SLT domain	SLT
UHGV-0172462_3	Pfam	PF04851	Type III restriction enzyme, res subunit	ResIII
UHGV-0172462_3	Pfam	PF18812	phage-Barnase-EndoU-ColicinE5/D-RelE like nuclease3	PBECR3
UHGV-0172462_3	Pfam	PF18857	Large polyvalent protein associated domain 38	LPD38
UHGV-0172462_3	COG	COG0553	Superfamily II DNA or RNA helicase, SNF2 family	NA
UHGV-0172462_5	UniRef90	UniRef90_A0A1G6NNF8	Intein N-terminal splicing region	NA
UHGV-0172462_5	eggNOG-mapper	1232428.CAVO010000067_gene416	NA	NA
UHGV-0172462_6	Structural annotation	PF00765, MF_02210, NF007644, COG2153	NA	NA
UHGV-0172462_7	PHROG	phrog_1807	tail fiber protein	tail
UHGV-0172462_7	UniRef90	UniRef90_A0A1Q6R2G9	NA	NA
UHGV-0172462_7	eggNOG-mapper	1408428.JNJP01000079_gene3366	NA	NA
UHGV-0172462_7	Pfam	PF14301	NA	DUF4376
UHGV-0172462_7	Structural annotation	PF14301	NA	NA
UHGV-0172462_8	PHROG	phrog_19618	tail collar protein	tail
UHGV-0172462_8	UniRef90	UniRef90_A0A354WRB2	Collar domain-containing protein	NA
UHGV-0172462_8	eggNOG-mapper	556269.ACDQ01000009_gene1944	Phage Tail Collar Domain	NA
UHGV-0172462_8	Pfam	PF07484	Phage Tail Collar Domain	Collar
UHGV-0172462_8	COG	COG4675	Phage tail collar domain	NA
UHGV-0172462_8	Structural annotation	PF07484	NA	NA
UHGV-0172462_9	PHROG	phrog_697	structural protein	head and packaging
UHGV-0172462_9	UniRef90	UniRef90_A0A5C7JMC8	Mtd_N domain-containing protein	NA
UHGV-0172462_11	eggNOG-mapper	910314.HMPREF9220_1078	NA	NA
UHGV-0172462_11	Structural annotation	PF16407, NF032891, COG5456	NA	NA
UHGV-0172462_13	eggNOG-mapper	1379858.N508_00283	NA	NA
UHGV-0172462_13	Structural annotation	PF11134, MF_00923, NF000022, COG4257	NA	NA
UHGV-0172462_14	PHROG	phrog_399	structural protein	head and packaging
UHGV-0172462_14	Structural annotation	PF20387	NA	NA
UHGV-0172462_15	PHROG	phrog_334	major head protein	head and packaging
UHGV-0172462_15	UniRef90	UniRef90_A0A316SB53	N4-gp56 family major capsid protein	NA
UHGV-0172462_15	eggNOG-mapper	401526.TcarDRAFT_1286	NA	NA
UHGV-0172462_15	Pfam	PF13252	NA	DUF4043
UHGV-0172462_15	NCBIFam	TIGR04387.1	N4-gp56 family major capsid protein	NA
UHGV-0172462_15	Structural annotation	PF13252, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0172462_18	PHROG	phrog_156	portal protein	head and packaging
UHGV-0172462_18	UniRef90	UniRef90_F7NK66	Putative phage portal protein	NA
UHGV-0172462_18	eggNOG-mapper	401526.TcarDRAFT_1284	Tfp pilus assembly protein FimV	NA
UHGV-0172462_18	COG	COG3170	Type IV pilus assembly protein FimV	NA
UHGV-0172462_18	Structural annotation	PF16510, MF_04120, TIGR01538, COG5518	NA	NA
UHGV-0172462_19	Pfam	PF04327	Cysteine protease Prp	Peptidase_Prp
UHGV-0172462_19	Structural annotation	PF04327, NF011124, COG2868	NA	NA
UHGV-0172462_20	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0172462_20	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0172462_20	UniRef90	UniRef90_A0A316S7L1	PBSX family phage terminase large subunit	NA
UHGV-0172462_20	eggNOG-mapper	1009370.ALO_12436	Phage terminase, large subunit	NA
UHGV-0172462_20	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0172462_20	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0172462_20	COG	COG1783	Phage terminase large subunit	NA
UHGV-0172462_20	Structural annotation	PF04466, PF20454, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0172462_21	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0172462_21	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-0172462_21	UniRef90	UniRef90_A0A1I0K7H5	Phage terminase small subunit	NA
UHGV-0172462_21	eggNOG-mapper	1391647.AVSV01000003_gene1801	Terminase small subunit	NA
UHGV-0172462_21	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0172462_21	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0172462_21	Structural annotation	PF03592, COG3728	NA	NA
UHGV-0172462_22	eggNOG-mapper	1280689.AUJC01000003_gene960	NA	NA
UHGV-0172462_23	PHROG	phrog_374	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0172462_23	eggNOG-mapper	1469607.KK073765_gene6586	NA	NA
UHGV-0172462_24	PHROG	phrog_2329	NA	unknown function
UHGV-0172462_24	UniRef90	UniRef90_UPI001AEB4F95	AbrB/MazE/SpoVT family DNA-binding domain-containing protein	NA
UHGV-0172462_24	eggNOG-mapper	1120746.CCNL01000005_gene152	NA	NA
UHGV-0172462_24	Pfam	PF04014	Antidote-toxin recognition MazE, bacterial antitoxin	MazE_antitoxin
UHGV-0172462_24	Structural annotation	PF04014, NF007312, COG2336	NA	NA
UHGV-0172462_25	eggNOG-mapper	401526.TcarDRAFT_1279	phage transcriptional regulator, RinA family	NA
UHGV-0172462_25	Structural annotation	PF05263, MF_00245, TIGR01636, COG2739	NA	NA
UHGV-0172462_26	PHROG	phrog_190	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0172462_26	UniRef90	UniRef90_UPI0018C4B0C5	NA	NA
UHGV-0172462_26	eggNOG-mapper	1347392.CCEZ01000043_gene417	NA	NA
UHGV-0172462_26	Pfam	PF06356	NA	DUF1064
UHGV-0172462_26	Structural annotation	PF06356	NA	NA
UHGV-0172462_27	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0172462_27	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0172462_27	UniRef90	UniRef90_R6WK64	Single-stranded DNA-binding protein	NA
UHGV-0172462_27	eggNOG-mapper	626939.HMPREF9443_01150	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-0172462_27	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0172462_27	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0172462_27	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0172462_27	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0172462_27	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-0172462_29	Structural annotation	PF16857, MF_00273, NF001981, COG2157	NA	NA
UHGV-0172462_33	PHROG	phrog_9207	NA	unknown function
UHGV-0172462_35	PHROG	phrog_2776	NA	unknown function
UHGV-0172462_35	UniRef90	UniRef90_A0A2S7ZCT0	DNA repair protein MmcB-related protein	NA
UHGV-0172462_35	Pfam	PF06319	DNA repair protein MmcB-like	MmcB-like
UHGV-0172462_35	Structural annotation	PF06319, NF033832, COG5321	NA	NA
UHGV-0172462_36	UniRef90	UniRef90_A0A6N7WVF3	Restriction endonuclease subunit S	NA
UHGV-0172462_39	eggNOG-mapper	1232453.BAIF02000017_gene3154	C-5 cytosine-specific DNA methylase	NA
UHGV-0172462_39	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0172462_39	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0172462_41	UniRef90	UniRef90_A0A316S7J6	Inhibitor_G39P domain-containing protein	NA
UHGV-0172462_41	eggNOG-mapper	1280706.AUJE01000046_gene1152	NA	NA
UHGV-0172462_41	Structural annotation	PF11417	NA	NA
UHGV-0172462_42	PHROG	phrog_270	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0172462_42	UniRef90	UniRef90_UPI0006877B23	helix-turn-helix domain-containing protein	NA
UHGV-0172462_42	eggNOG-mapper	742741.HMPREF9475_03963	NA	NA
UHGV-0172462_42	Pfam	PF13730	Helix-turn-helix domain	HTH_36
UHGV-0172462_42	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0172462_42	Structural annotation	PF02295, MF_01819, TIGR04176, COG3355	NA	NA
UHGV-0172462_43	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0172462_43	eggNOG-mapper	1507.HMPREF0262_00432	NA	NA
UHGV-0172462_43	Structural annotation	PF05772, NF007281	NA	NA
UHGV-0172462_44	PHROG	phrog_7566	NA	unknown function
UHGV-0172462_44	eggNOG-mapper	508419.F8J187_9CAUD	NA	NA
UHGV-0172462_45	PHROG	phrog_155	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0172462_45	UniRef90	UniRef90_A0A843HP81	ERF family protein	NA
UHGV-0172462_45	eggNOG-mapper	386415.NT01CX_2192	ERF superfamily	NA
UHGV-0172462_45	Pfam	PF04404	ERF superfamily	ERF
UHGV-0172462_45	Structural annotation	PF04404, TIGR00607, COG4712	NA	NA
UHGV-0172462_48	PHROG	phrog_14367	NA	unknown function
UHGV-0172462_48	UniRef90	UniRef90_R6WTN1	Peptidoglycan-binding LysM	NA
UHGV-0172462_48	eggNOG-mapper	478749.BRYFOR_06242	LysM domain	NA
UHGV-0172462_48	Pfam	PF01476	LysM domain	LysM
UHGV-0172462_48	COG	COG1388	LysM repeat	NA
UHGV-0172462_48	Structural annotation	MF_02014, NF010723	NA	NA
UHGV-0172462_52	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-0172462_52	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0172462_52	UniRef90	UniRef90_A0A4V0I2W7	HTH cro/C1-type domain-containing protein	NA
UHGV-0172462_52	eggNOG-mapper	515622.bpr_I2741	IrrE N-terminal-like domain	NA
UHGV-0172462_52	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0172462_52	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0172462_52	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0172462_52	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0172462_53	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0172462_53	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0172462_53	UniRef90	UniRef90_A0A645JJK5	HTH cro/C1-type domain-containing protein	NA
UHGV-0172462_53	eggNOG-mapper	246199.CUS_7322	Helix-turn-helix	NA
UHGV-0172462_53	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0172462_53	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0172462_54	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0172462_54	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0172462_54	UniRef90	UniRef90_A0A1Q6R550	HTH cro/C1-type domain-containing protein	NA
UHGV-0172462_54	eggNOG-mapper	580331.Thit_1413	Helix-turn-helix XRE-family like proteins	NA
UHGV-0172462_54	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0172462_54	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0172462_54	Structural annotation	PF01381, MF_02017, NF041951, COG1476	NA	NA
UHGV-0172462_57	Structural annotation	PF16747	NA	NA
UHGV-0172462_58	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0172462_58	PHROG	phrog_95	integrase	integration and excision
UHGV-0172462_58	UniRef90	UniRef90_E8LBZ4	Resolvase, N-terminal domain protein	NA
UHGV-0172462_58	eggNOG-mapper	626939.HMPREF9443_00357	overlaps another CDS with the same product name	NA
UHGV-0172462_58	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0172462_58	Pfam	PF07508	Recombinase	Recombinase
UHGV-0172462_58	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0172462_58	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0172462_58	Structural annotation	PF07508, PF00239, NF041201, COG1961	NA	NA