UHGV-0172463

Genome information

Genome length 44,303 bps

CDS count 73

Completeness 61.12% (medium-quality)

geNomad score 0.9754

Prediction confidence Confident

Genome information
Genome ID	UHGV-0172463
vOTU ID	vOTU-022449
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_583717
BioSample	NA
Country	Madagascar
Virus prediction confidence	Confident

Quality assessment
CheckV method	HMM-based
CheckV completeness	61.12% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	14
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9754
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	51.96
Jumbo phage	No

Genome content
Genome length	44,303 bps
GC content	50.98%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	73
CDS density	88.26%
Average CDS length	539.59 bps
tRNA count	2
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0172463_1	PHROG	phrog_606	terminase small subunit	head and packaging
UHGV-0172463_1	UniRef90	UniRef90_UPI001C012D23	DNA-packaging protein	NA
UHGV-0172463_1	eggNOG-mapper	931276.Cspa_c57180	DNA-packaging protein gp3	NA
UHGV-0172463_1	Pfam	PF16677	DNA-packaging protein gp3	GP3_package
UHGV-0172463_1	Structural annotation	PF16677	NA	NA
UHGV-0172463_12	UniRef90	UniRef90_A0A1I1AQ89	Cro/C1-type HTH DNA-binding domain-containing protein	NA
UHGV-0172463_12	Structural annotation	PF20075, TIGR03070, COG1396	NA	NA
UHGV-0172463_13	Structural annotation	PF19818, TIGR03931	NA	NA
UHGV-0172463_17	PHROG	phrog_38	terminase large subunit	head and packaging
UHGV-0172463_17	UniRef90	UniRef90_A0A810QA10	Terminase	NA
UHGV-0172463_17	eggNOG-mapper	1298920.KI911353_gene2682	TIGRFAM Phage	NA
UHGV-0172463_17	NCBIFam	TIGR01630.1	phage terminase large subunit	NA
UHGV-0172463_17	COG	COG5410	NA	NA
UHGV-0172463_17	Structural annotation	PF17289, PF04466, MF_04147, NF033889, COG5410, COG5362	NA	NA
UHGV-0172463_19	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0172463_19	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-0172463_19	UniRef90	UniRef90_UPI00193BAC60	phage antirepressor	NA
UHGV-0172463_19	eggNOG-mapper	573061.Clocel_3580	Phage antirepressor protein	NA
UHGV-0172463_19	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0172463_19	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0172463_19	COG	COG3617	Prophage antirepressor	NA
UHGV-0172463_19	Structural annotation	PF03374, PF02498, TIGR02681, COG3617, COG3645	NA	NA
UHGV-0172463_21	PHROG	phrog_64	portal protein	head and packaging
UHGV-0172463_21	UniRef90	UniRef90_UPI001C02F349	phage portal protein	NA
UHGV-0172463_21	eggNOG-mapper	1123263.AUKY01000015_gene1609	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0172463_21	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0172463_21	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0172463_24	PHROG	phrog_1328	major head protein	head and packaging
UHGV-0172463_24	UniRef90	UniRef90_UPI00164DD2D5	NA	NA
UHGV-0172463_24	eggNOG-mapper	665956.HMPREF1032_03619	NA	NA
UHGV-0172463_24	Pfam	PF17236	NA	DUF5309
UHGV-0172463_24	Structural annotation	PF17236, MF_04119, NF041162, COG4653	NA	NA
UHGV-0172463_25	UniRef90	UniRef90_UPI00164E20D5	phage head-tail connector protein	NA
UHGV-0172463_25	eggNOG-mapper	1298920.KI911353_gene2658	NA	NA
UHGV-0172463_25	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0172463_25	Structural annotation	TIGR01560	NA	NA
UHGV-0172463_26	eggNOG-mapper	1121866.AUGK01000003_gene1432	NA	NA
UHGV-0172463_27	eggNOG-mapper	476272.RUMHYD_01963	NA	NA
UHGV-0172463_28	Structural annotation	PF06141, TIGR02367, COG3167	NA	NA
UHGV-0172463_29	PHROG	phrog_158	major tail protein	tail
UHGV-0172463_29	UniRef90	UniRef90_A0A1C6L0H9	Phage tail protein	NA
UHGV-0172463_29	eggNOG-mapper	1232453.BAIF02000058_gene1634	NA	NA
UHGV-0172463_29	Structural annotation	PF16463, TIGR02241, COG5437	NA	NA
UHGV-0172463_30	UniRef90	UniRef90_A0A496N7D3	NA	NA
UHGV-0172463_30	eggNOG-mapper	1123263.AUKY01000015_gene1618	NA	NA
UHGV-0172463_30	Pfam	PF16478	NA	DUF5055
UHGV-0172463_30	Structural annotation	PF16478	NA	NA
UHGV-0172463_31	eggNOG-mapper	469596.HMPREF9488_01312	NA	NA
UHGV-0172463_32	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0172463_32	eggNOG-mapper	1121866.AUGK01000003_gene1437	phage tail tape measure protein	NA
UHGV-0172463_32	COG	COG1280	Threonine/homoserine/homoserine lactone efflux protein	NA
UHGV-0172463_33	PHROG	phrog_1194	NA	unknown function
UHGV-0172463_33	eggNOG-mapper	1507.HMPREF0262_01188	NA	NA
UHGV-0172463_33	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0172463_34	PHROG	phrog_6616	tail protein	tail
UHGV-0172463_34	eggNOG-mapper	1507.HMPREF0262_00217	NA	NA
UHGV-0172463_38	PHROG	phrog_19280	NA	unknown function
UHGV-0172463_38	UniRef90	UniRef90_A0A416HFD1	NA	NA
UHGV-0172463_38	eggNOG-mapper	1160721.RBI_I01569	NA	NA
UHGV-0172463_38	Pfam	PF19789	NA	DUF6273
UHGV-0172463_38	Structural annotation	PF19789	NA	NA
UHGV-0172463_40	PHROG	phrog_134	NA	unknown function
UHGV-0172463_40	UniRef90	UniRef90_A0A0B2K152	AraC family transcriptional regulator	NA
UHGV-0172463_40	eggNOG-mapper	1297617.JPJD01000099_gene2170	Phage uncharacterised protein (Phage_XkdX)	NA
UHGV-0172463_40	Pfam	PF09693	Phage uncharacterised protein (Phage_XkdX)	Phage_XkdX
UHGV-0172463_40	NCBIFam	TIGR01669.1	XkdX family protein	NA
UHGV-0172463_40	Structural annotation	PF09693, TIGR01669	NA	NA
UHGV-0172463_41	KOfam	K08640	E3.4.17.14; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14]	NA
UHGV-0172463_41	PHROG	phrog_894	endolysin	lysis
UHGV-0172463_41	UniRef90	UniRef90_UPI001C12323B	D-Ala-D-Ala carboxypeptidase family metallohydrolase	NA
UHGV-0172463_41	eggNOG-mapper	931626.Awo_c26840	Peptidase M15	NA
UHGV-0172463_41	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-0172463_41	Pfam	PF08291	Peptidase M15	Peptidase_M15_3
UHGV-0172463_41	COG	COG3108	NA	NA
UHGV-0172463_41	Structural annotation	PF05951, PF01471, TIGR02869, COG3108	NA	NA
UHGV-0172463_42	PHROG	phrog_4105	NA	unknown function
UHGV-0172463_42	UniRef90	UniRef90_A0A8D9UHA9	Holin protein	NA
UHGV-0172463_42	eggNOG-mapper	742733.HMPREF9469_05011	NA	NA
UHGV-0172463_43	PHROG	phrog_881	holin	lysis
UHGV-0172463_43	UniRef90	UniRef90_A0A4Q7P349	Dp-1 family holin	NA
UHGV-0172463_43	eggNOG-mapper	742740.HMPREF9474_02251	Putative phage holin Dp-1	NA
UHGV-0172463_43	Pfam	PF16938	Putative phage holin Dp-1	Phage_holin_Dp1
UHGV-0172463_43	Structural annotation	PF16938	NA	NA
UHGV-0172463_44	Structural annotation	PF01047, MF_00620, COG2771	NA	NA
UHGV-0172463_48	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0172463_48	PHROG	phrog_95	integrase	integration and excision
UHGV-0172463_48	UniRef90	UniRef90_UPI00164E9A6A	recombinase family protein	NA
UHGV-0172463_48	eggNOG-mapper	718252.FP2_29980	NA	NA
UHGV-0172463_48	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0172463_48	Pfam	PF07508	Recombinase	Recombinase
UHGV-0172463_48	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0172463_48	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0172463_48	Structural annotation	PF00239, PF07508, NF041201, COG1961	NA	NA
UHGV-0172463_49	Structural annotation	PF12844, MF_00535, NF041951, COG1476	NA	NA
UHGV-0172463_50	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0172463_50	UniRef90	UniRef90_A0A8D9UHB1	Repressor protein CI	NA
UHGV-0172463_50	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0172463_50	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0172463_50	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0172463_53	Structural annotation	PF18129, PF08962, MF_00613, NF002745	NA	NA
UHGV-0172463_57	PHROG	phrog_434	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0172463_57	UniRef90	UniRef90_UPI001D078B74	YqaJ viral recombinase family protein	NA
UHGV-0172463_57	eggNOG-mapper	1121344.JHZO01000003_gene985	YqaJ viral recombinase family	NA
UHGV-0172463_57	Pfam	PF09588	YqaJ-like viral recombinase domain	YqaJ
UHGV-0172463_57	NCBIFam	TIGR03033.1	putative phage-type endonuclease	NA
UHGV-0172463_57	COG	COG5377	Phage-related protein, predicted endonuclease	NA
UHGV-0172463_57	Structural annotation	PF09588, MF_03030, TIGR03033, COG5377	NA	NA
UHGV-0172463_58	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-0172463_58	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0172463_58	UniRef90	UniRef90_U2SBP2	Recombination and repair protein RecT	NA
UHGV-0172463_58	eggNOG-mapper	1226322.HMPREF1545_00015	RecT family	NA
UHGV-0172463_58	Pfam	PF03837	RecT family	RecT
UHGV-0172463_58	NCBIFam	TIGR00616.1	recombinase, phage RecT family	NA
UHGV-0172463_58	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-0172463_58	Structural annotation	PF03837, NF007351, COG3723	NA	NA
UHGV-0172463_59	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0172463_59	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0172463_59	UniRef90	UniRef90_UPI001EDF3789	single-stranded DNA-binding protein	NA
UHGV-0172463_59	eggNOG-mapper	693746.OBV_19910	Single-strand binding protein family	NA
UHGV-0172463_59	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0172463_59	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0172463_59	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0172463_59	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0172463_59	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0172463_60	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0172463_60	PHROG	phrog_140	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0172463_60	UniRef90	UniRef90_A0A7C6XX43	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-0172463_60	eggNOG-mapper	545697.HMPREF0216_02819	Endodeoxyribonuclease RusA	NA
UHGV-0172463_60	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0172463_60	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0172463_60	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0172463_61	PHROG	phrog_4973	NA	unknown function
UHGV-0172463_61	UniRef90	UniRef90_A0A3D3Y0P8	DNA-binding protein	NA
UHGV-0172463_61	eggNOG-mapper	1072685.IX83_07155	Helix-turn-helix domain	NA
UHGV-0172463_61	Pfam	PF14090	Helix-turn-helix domain	HTH_39
UHGV-0172463_61	Structural annotation	PF14090, MF_01586, TIGR00373, COG5625	NA	NA
UHGV-0172463_62	PHROG	phrog_15768	NA	unknown function
UHGV-0172463_62	UniRef90	UniRef90_A0A4D7AS84	NA	NA
UHGV-0172463_62	eggNOG-mapper	642492.Clole_1479	DnaD domain protein	NA
UHGV-0172463_62	AcrCatalog	cluster_38323	NA	NA
UHGV-0172463_62	Pfam	PF19808	NA	DUF6291
UHGV-0172463_62	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0172463_62	Structural annotation	PF19808	NA	NA
UHGV-0172463_63	PHROG	phrog_9804	NA	unknown function
UHGV-0172463_63	UniRef90	UniRef90_UPI0018AA0ECD	replicative helicase loader/inhibitor	NA
UHGV-0172463_63	eggNOG-mapper	1121344.JHZO01000003_gene981	Loader and inhibitor of phage G40P	NA
UHGV-0172463_63	Pfam	PF11417	Loader and inhibitor of phage G40P	Inhibitor_G39P
UHGV-0172463_63	Structural annotation	PF11417	NA	NA
UHGV-0172463_64	eggNOG-mapper	657322.FPR_23130	NA	NA
UHGV-0172463_65	PHROG	phrog_599	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
UHGV-0172463_65	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-0172463_65	Structural annotation	PF14354, TIGR03655	NA	NA
UHGV-0172463_66	PHROG	phrog_5070	NA	unknown function
UHGV-0172463_66	UniRef90	UniRef90_A0A2X3D5G9	Transferase clustered with tellurite resistance proteins TehA/TehB	NA
UHGV-0172463_66	eggNOG-mapper	768710.DesyoDRAFT_1067	Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3-hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell	NA
UHGV-0172463_66	Pfam	PF18836	YdcK Beta solenoid repeat	B_solenoid_ydck
UHGV-0172463_66	COG	COG1044	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase	NA
UHGV-0172463_66	Structural annotation	NF040481	NA	NA
UHGV-0172463_68	UniRef90	UniRef90_UPI000E4B3D74	NA	NA
UHGV-0172463_68	Pfam	PF04448	NA	DUF551
UHGV-0172463_69	KOfam	K00390	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	NA
UHGV-0172463_69	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0172463_69	UniRef90	UniRef90_A0A1Y4LU27	Adenylyl-sulfate reductase	NA
UHGV-0172463_69	eggNOG-mapper	1408437.JNJN01000032_gene2312	Phosphoadenosine phosphosulfate reductase	NA
UHGV-0172463_69	PADLOC	BrxP_00001	BrxP	BREX
UHGV-0172463_69	Pfam	PF01507	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
UHGV-0172463_69	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0172463_69	Structural annotation	PF01507, MF_00063, NF010369, COG0175	NA	NA
UHGV-0172463_71	Structural annotation	PF09889, MF_00649, COG4068	NA	NA