UHGV-0172485

Genome information

Genome length 36,473 bps

CDS count 62

Completeness 100.00% (complete)

geNomad score 0.9797

Prediction confidence Confident

Genome information
Genome ID	UHGV-0172485
vOTU ID	vOTU-002903
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_583065
BioSample	SAMN09781708
Country	Madagascar
Virus prediction confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	24
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9797
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	53.4
Jumbo phage	No

Genome content
Genome length	36,473 bps
GC content	45.32%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	62
CDS density	90.76%
Average CDS length	537.10 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0172485_1	PHROG	phrog_64	portal protein	head and packaging
UHGV-0172485_1	UniRef90	UniRef90_A0A285PU84	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0172485_1	eggNOG-mapper	1042156.CXIVA_01850	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0172485_1	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0172485_1	Structural annotation	PF05133, MF_04120, TIGR01538, COG3567	NA	NA
UHGV-0172485_2	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0172485_2	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0172485_2	UniRef90	UniRef90_A0A1C6J947	Bacteriophage terminase large (ATPase) subunit and inactivated derivatives	NA
UHGV-0172485_2	eggNOG-mapper	1226322.HMPREF1545_00043	Phage terminase large subunit	NA
UHGV-0172485_2	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0172485_2	Pfam	PF17289	Terminase RNaseH-like domain	Terminase_6C
UHGV-0172485_2	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0172485_2	COG	COG1783	Phage terminase large subunit	NA
UHGV-0172485_2	Structural annotation	PF04466, PF17289, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0172485_3	PHROG	phrog_2412	NA	unknown function
UHGV-0172485_3	eggNOG-mapper	1232449.BAHV02000018_gene1532	NA	NA
UHGV-0172485_3	Pfam	PF10685	Stress-induced bacterial acidophilic repeat motif	KGG
UHGV-0172485_4	KOfam	K21527	mom; adenine modification enzyme [EC:2.3.1.-]	NA
UHGV-0172485_4	PHROG	phrog_1384	Mom-like DNA modification protein	other
UHGV-0172485_4	UniRef90	UniRef90_F0SQP3	Phage DNA modification protein	NA
UHGV-0172485_4	eggNOG-mapper	619693.HMPREF6745_2515	NA	NA
UHGV-0172485_4	Structural annotation	PF16092, MF_02210, NF007025, COG3818	NA	NA
UHGV-0172485_5	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-0172485_5	PHROG	phrog_620	ParB-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0172485_5	UniRef90	UniRef90_A0A3D3Y046	Chromosome partitioning protein ParB	NA
UHGV-0172485_5	eggNOG-mapper	1174684.EBMC1_01280	DNA methylase	NA
UHGV-0172485_5	PADLOC	MTase_II_00015	Type II methyltransferase	RM
UHGV-0172485_5	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0172485_5	COG	COG0863	DNA modification methylase	NA
UHGV-0172485_5	Structural annotation	PF02195, TIGR00180, COG5119	NA	NA
UHGV-0172485_6	PHROG	phrog_801	endolysin; inhibits RNA polymerase	lysis
UHGV-0172485_6	UniRef90	UniRef90_A0A7X8EV86	NA	NA
UHGV-0172485_6	eggNOG-mapper	1536597.A0A088F6H4_9CAUD	Cytidine and deoxycytidylate deaminase zinc-binding region	NA
UHGV-0172485_6	Pfam	PF18909	dATP/dGTP diphosphohydrolase, N-terminal	dGTP_diPhyd_N
UHGV-0172485_6	Structural annotation	PF18909	NA	NA
UHGV-0172485_8	PHROG	phrog_8680	NA	unknown function
UHGV-0172485_8	UniRef90	UniRef90_A0A373V619	NA	NA
UHGV-0172485_8	eggNOG-mapper	411470.RUMGNA_02208	NA	NA
UHGV-0172485_8	Pfam	PF14386	NA	DUF4417
UHGV-0172485_8	Structural annotation	PF14386	NA	NA
UHGV-0172485_12	PHROG	phrog_111	DNA methyltransferase	other
UHGV-0172485_12	UniRef90	UniRef90_A0A3A9HWM1	Adenine methyltransferase	NA
UHGV-0172485_12	eggNOG-mapper	445972.ANACOL_03344	DNA N-6-adenine-methyltransferase (Dam)	NA
UHGV-0172485_12	PADLOC	oMTase_00015	orphan methyltransferase	RM
UHGV-0172485_12	Pfam	PF05869	DNA N-6-adenine-methyltransferase (Dam)	Dam
UHGV-0172485_12	Structural annotation	PF05869, TIGR01712, COG0338	NA	NA
UHGV-0172485_14	PHROG	phrog_2562	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0172485_14	UniRef90	UniRef90_A0A374NA85	NA	NA
UHGV-0172485_14	eggNOG-mapper	1235790.C805_00030	NA	NA
UHGV-0172485_14	Pfam	PF14297	Lin1244/Lin1753-like, N-terminal	Lin1244_N
UHGV-0172485_14	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0172485_14	Structural annotation	PF14297	NA	NA
UHGV-0172485_16	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0172485_16	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0172485_16	UniRef90	UniRef90_A0A1C6GFU4	Single-stranded DNA-binding protein	NA
UHGV-0172485_16	eggNOG-mapper	1514668.JOOA01000002_gene3349	Single-stranded DNA-binding protein	NA
UHGV-0172485_16	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0172485_16	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0172485_16	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0172485_16	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0172485_16	Structural annotation	PF00436, MF_00984, NF005579, COG0629	NA	NA
UHGV-0172485_18	UniRef90	UniRef90_A0A098GES5	Putative phage associated protein	NA
UHGV-0172485_18	Structural annotation	PF01423, MF_00257, NF001963, COG1958	NA	NA
UHGV-0172485_19	PHROG	phrog_3490	ERCC4-type nuclease	DNA, RNA and nucleotide metabolism
UHGV-0172485_19	UniRef90	UniRef90_A0A1C6GFR4	Hef nuclease	NA
UHGV-0172485_19	eggNOG-mapper	861454.HMPREF9099_00350	ERCC4 domain	NA
UHGV-0172485_19	Pfam	PF02732	ERCC4 domain	ERCC4
UHGV-0172485_19	Structural annotation	PF03834, NF040956, COG1948	NA	NA
UHGV-0172485_20	PHROG	phrog_561	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0172485_20	UniRef90	UniRef90_UPI001EE8E2AA	recombinase RecT	NA
UHGV-0172485_20	eggNOG-mapper	861454.HMPREF9099_00346	NA	NA
UHGV-0172485_20	Pfam	PF03837	RecT family	RecT
UHGV-0172485_20	Structural annotation	PF03837, TIGR01913	NA	NA
UHGV-0172485_21	KOfam	K10906	recE; exodeoxyribonuclease VIII [EC:3.1.11.-]	NA
UHGV-0172485_21	PHROG	phrog_412	exonuclease VIII	DNA, RNA and nucleotide metabolism
UHGV-0172485_21	UniRef90	UniRef90_A0A1C6GFL6	Exodeoxyribonuclease 8	NA
UHGV-0172485_21	eggNOG-mapper	641147.HMPREF9021_02702	NA	NA
UHGV-0172485_21	Pfam	PF12684	NA	DUF3799
UHGV-0172485_21	COG	COG1074	3'-5' helicase subunit RecB of the DNA repair enzyme RecBCD (exonuclease V)	NA
UHGV-0172485_21	Structural annotation	PF12684, MF_03030, TIGR01896, COG2887	NA	NA
UHGV-0172485_26	PHROG	phrog_1468	transcriptional repressor	transcription regulation
UHGV-0172485_26	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0172485_26	COG	COG2932	Phage repressor protein C, contains Cro/C1-type HTH and peptisase s24 domains	NA
UHGV-0172485_27	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0172485_27	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0172485_27	UniRef90	UniRef90_A0A374HKJ0	XRE family transcriptional regulator	NA
UHGV-0172485_27	eggNOG-mapper	97138.C820_00203	Transcriptional	NA
UHGV-0172485_27	Pfam	PF12844	Helix-turn-helix domain	HTH_19
UHGV-0172485_27	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0172485_27	Structural annotation	PF12844, MF_00535, NF007257, COG1476	NA	NA
UHGV-0172485_28	PHROG	phrog_7854	endolysin	lysis
UHGV-0172485_28	eggNOG-mapper	169963.lmo0617	NA	NA
UHGV-0172485_28	Pfam	PF19127	Choline-binding repeat	Choline_bind_3
UHGV-0172485_28	Pfam	PF16729	NA	DUF5067
UHGV-0172485_29	KOfam	K14059	int; integrase	NA
UHGV-0172485_29	PHROG	phrog_1	integrase	integration and excision
UHGV-0172485_29	UniRef90	UniRef90_B0ML01	Site-specific recombinase, phage integrase family	NA
UHGV-0172485_29	eggNOG-mapper	641112.ACOK01000073_gene2860	Phage integrase family	NA
UHGV-0172485_29	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0172485_29	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0172485_29	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0172485_29	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-0172485_30	Structural annotation	PF12510	NA	NA
UHGV-0172485_31	PHROG	phrog_20016	NA	unknown function
UHGV-0172485_31	UniRef90	UniRef90_A0A2Z4QB67	Carbohydrate binding domain/collagen triple helix repeat protein	NA
UHGV-0172485_31	eggNOG-mapper	1235790.C805_00062	NA	NA
UHGV-0172485_31	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0172485_32	PHROG	phrog_16490	NA	unknown function
UHGV-0172485_32	UniRef90	UniRef90_A0A8F0WFQ8	Outer capsid protein/viral fiber	NA
UHGV-0172485_32	eggNOG-mapper	445972.ANACOL_01880	NA	NA
UHGV-0172485_33	PHROG	phrog_22984	NA	unknown function
UHGV-0172485_34	PHROG	phrog_21718	NA	unknown function
UHGV-0172485_34	eggNOG-mapper	397290.C810_05210	NA	NA
UHGV-0172485_35	PHROG	phrog_3754	NA	unknown function
UHGV-0172485_35	eggNOG-mapper	476272.RUMHYD_01764	NA	NA
UHGV-0172485_36	Pfam	PF13560	Helix-turn-helix domain	HTH_31
UHGV-0172485_36	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0172485_42	PHROG	phrog_1863	NA	unknown function
UHGV-0172485_42	UniRef90	UniRef90_UPI001F223E8B	hemolysin XhlA family protein	NA
UHGV-0172485_42	eggNOG-mapper	1226322.HMPREF1545_04027	NA	NA
UHGV-0172485_43	eggNOG-mapper	642492.Clole_0840	NA	NA
UHGV-0172485_44	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0172485_44	PHROG	phrog_9611	endolysin	lysis
UHGV-0172485_44	UniRef90	UniRef90_A0A374VU40	N-acetylmuramoyl-L-alanine amidase domain-containing protein	NA
UHGV-0172485_44	eggNOG-mapper	411473.RUMCAL_00096	Ami_2	NA
UHGV-0172485_44	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0172485_44	COG	COG5632	N-acetylmuramoyl-L-alanine amidase CwlA	NA
UHGV-0172485_44	Structural annotation	PF01510, PF19087, MF_04111, NF008758, NF041850, COG5632	NA	NA
UHGV-0172485_46	UniRef90	UniRef90_A0A1Y4RWY1	NA	NA
UHGV-0172485_46	eggNOG-mapper	693746.OBV_22700	NA	NA
UHGV-0172485_46	Structural annotation	PF14301	NA	NA
UHGV-0172485_47	PHROG	phrog_1220	head protein	head and packaging
UHGV-0172485_47	UniRef90	UniRef90_K2PTU2	Phage baseplate protein	NA
UHGV-0172485_47	eggNOG-mapper	431943.CKL_4054	COG NOG18825 non supervised orthologous group	NA
UHGV-0172485_48	PHROG	phrog_538	minor tail protein	tail
UHGV-0172485_48	UniRef90	UniRef90_UPI001A8F458A	phage tail protein	NA
UHGV-0172485_48	eggNOG-mapper	431943.CKL_2629	Siphovirus ReqiPepy6 Gp37-like protein	NA
UHGV-0172485_48	Pfam	PF14594	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
UHGV-0172485_48	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0172485_49	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0172485_49	UniRef90	UniRef90_D9SQ05	Tail component family protein	NA
UHGV-0172485_49	eggNOG-mapper	573061.Clocel_2428	Phage tail protein	NA
UHGV-0172485_49	COG	COG4722	Phage-related protein YomH	NA
UHGV-0172485_49	Structural annotation	PF20753, PF16774, TIGR01633, COG4722	NA	NA
UHGV-0172485_50	KOfam	K16476	NIN; ninein	NA
UHGV-0172485_50	PHROG	phrog_3981	tail length tape measure protein	tail
UHGV-0172485_50	eggNOG-mapper	536233.CLO_1577	tape measure	NA
UHGV-0172485_50	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0172485_52	PHROG	phrog_885	major tail protein	tail
UHGV-0172485_52	UniRef90	UniRef90_A0A843J9F0	Ig-like domain-containing protein	NA
UHGV-0172485_52	eggNOG-mapper	1504822.CCNO01000012_gene492	NA	NA
UHGV-0172485_52	Structural annotation	PF06488, TIGR01603, COG5437	NA	NA
UHGV-0172485_53	Structural annotation	PF11367	NA	NA
UHGV-0172485_54	PHROG	phrog_17977	NA	unknown function
UHGV-0172485_54	UniRef90	UniRef90_UPI00141211AB	head-tail adaptor protein	NA
UHGV-0172485_54	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0172485_54	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-0172485_56	PHROG	phrog_4502	NA	unknown function
UHGV-0172485_56	eggNOG-mapper	268407.PWYN_12400	NA	NA
UHGV-0172485_56	Structural annotation	PF14083	NA	NA
UHGV-0172485_57	PHROG	phrog_544	major head protein	head and packaging
UHGV-0172485_57	UniRef90	UniRef90_A0A810PZM2	S-l_SbsC_C domain-containing protein	NA
UHGV-0172485_57	eggNOG-mapper	1347392.CCEZ01000005_gene1236	NA	NA
UHGV-0172485_57	Structural annotation	PF03864, MF_04119, TIGR04387, COG4834	NA	NA
UHGV-0172485_58	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0172485_58	Structural annotation	PF06810	NA	NA
UHGV-0172485_59	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0172485_59	UniRef90	UniRef90_A0A6A8M6L6	HK97 gp10 family phage protein	NA
UHGV-0172485_59	eggNOG-mapper	1504822.CCNO01000013_gene284	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0172485_59	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0172485_59	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-0172485_59	Structural annotation	PF05069, TIGR01725, COG5005	NA	NA
UHGV-0172485_61	PHROG	phrog_859	portal protein	head and packaging
UHGV-0172485_61	UniRef90	UniRef90_A0A3A9EHQ6	Phage_Mu_F domain-containing protein	NA
UHGV-0172485_61	eggNOG-mapper	1504822.CCNO01000013_gene286	cell adhesion	NA
UHGV-0172485_61	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0172485_61	COG	COG2369	NA	NA
UHGV-0172485_61	Structural annotation	PF04233, TIGR01641, COG2369	NA	NA