UHGV-0172489

Genome information

Genome length 35,367 bps

CDS count 57

Completeness 100.00% (complete)

geNomad score 0.9776

Prediction confidence Confident

Genome information
Genome ID	UHGV-0172489
vOTU ID	vOTU-046454
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_575546
BioSample	NA
Country	India
Virus prediction confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	13
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9776
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	39.31
Jumbo phage	No

Genome content
Genome length	35,367 bps
GC content	61.94%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	57
CDS density	92.83%
Average CDS length	580.11 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0172489_1	UniRef90	UniRef90_A0A8D9UHA6	Helix-turn-helix XRE-family like protein	NA
UHGV-0172489_1	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0172489_1	Structural annotation	PF12844, MF_00535, TIGR03070, COG1396	NA	NA
UHGV-0172489_2	KOfam	K14059	int; integrase	NA
UHGV-0172489_2	PHROG	phrog_1	integrase	integration and excision
UHGV-0172489_2	UniRef90	UniRef90_A0A174HFN7	Site-specific tyrosine recombinase XerC	NA
UHGV-0172489_2	eggNOG-mapper	742738.HMPREF9460_01344	Phage integrase family	NA
UHGV-0172489_2	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0172489_2	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0172489_2	Structural annotation	PF00589, PF12167, MF_02055, NF040815, COG4974	NA	NA
UHGV-0172489_5	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0172489_9	Structural annotation	PF04545, MF_00674, NF008895, COG1342	NA	NA
UHGV-0172489_10	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0172489_10	PHROG	phrog_1794	amidase	lysis
UHGV-0172489_10	UniRef90	UniRef90_A0A658JW32	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0172489_10	eggNOG-mapper	573061.Clocel_3960	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0172489_10	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0172489_10	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-0172489_10	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0172489_10	Structural annotation	PF01510, PF01471, TIGR03979, COG5632, COG3409	NA	NA
UHGV-0172489_11	Structural annotation	PF09682	NA	NA
UHGV-0172489_13	Structural annotation	PF05543, NF033920	NA	NA
UHGV-0172489_14	PHROG	phrog_4105	NA	unknown function
UHGV-0172489_14	UniRef90	UniRef90_A0A8D9UHA9	Holin protein	NA
UHGV-0172489_14	eggNOG-mapper	411460.RUMTOR_01326	NA	NA
UHGV-0172489_16	eggNOG-mapper	411471.SUBVAR_06929	ATPase involved in DNA repair	NA
UHGV-0172489_16	COG	COG0419	DNA repair exonuclease SbcCD ATPase subunit	NA
UHGV-0172489_18	UniRef90	UniRef90_F7V7L8	ABC-type amino acid transport system	NA
UHGV-0172489_18	eggNOG-mapper	1232428.CAVO010000002_gene2344	NA	NA
UHGV-0172489_18	Structural annotation	PF16407, NF032891, COG5456	NA	NA
UHGV-0172489_19	Structural annotation	PF21683	NA	NA
UHGV-0172489_20	Structural annotation	PF20377	NA	NA
UHGV-0172489_21	PHROG	phrog_6616	tail protein	tail
UHGV-0172489_21	UniRef90	UniRef90_UPI000F53DFF3	tail fiber domain-containing protein	NA
UHGV-0172489_21	eggNOG-mapper	1298920.KI911353_gene2679	NA	NA
UHGV-0172489_21	Structural annotation	PF07902, NF033848, COG3500	NA	NA
UHGV-0172489_22	PHROG	phrog_1194	NA	unknown function
UHGV-0172489_22	UniRef90	UniRef90_A0A8D9PDT1	YolD-like protein	NA
UHGV-0172489_22	eggNOG-mapper	483218.BACPEC_01144	NA	NA
UHGV-0172489_22	Pfam	PF20458	NA	DUF6711
UHGV-0172489_22	Structural annotation	PF20458, TIGR01633, COG3499	NA	NA
UHGV-0172489_23	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0172489_23	UniRef90	UniRef90_A0A1G9R278	Phage-related protein	NA
UHGV-0172489_23	eggNOG-mapper	1120998.AUFC01000013_gene2948	Phage tail tape measure protein TP901	NA
UHGV-0172489_23	COG	COG5280	Phage-related minor tail protein	NA
UHGV-0172489_25	PHROG	phrog_34587	NA	unknown function
UHGV-0172489_25	Structural annotation	PF11836	NA	NA
UHGV-0172489_26	PHROG	phrog_158	major tail protein	tail
UHGV-0172489_26	UniRef90	UniRef90_A0A831TIM5	Histidine kinase	NA
UHGV-0172489_26	eggNOG-mapper	1414720.CBYM010000002_gene566	Phage tail tube protein	NA
UHGV-0172489_26	Pfam	PF16461	Lambda phage tail tube protein, TTP	Phage_TTP_12
UHGV-0172489_26	Structural annotation	PF16461, TIGR02241, COG5437	NA	NA
UHGV-0172489_27	Structural annotation	PF12691	NA	NA
UHGV-0172489_28	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0172489_28	UniRef90	UniRef90_UPI000476ED54	HK97 gp10 family phage protein	NA
UHGV-0172489_28	eggNOG-mapper	1122919.KB905559_gene1352	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0172489_29	PHROG	phrog_25	head closure Hc1	connector
UHGV-0172489_29	UniRef90	UniRef90_E6KYB5	Phage head-tail adaptor	NA
UHGV-0172489_29	eggNOG-mapper	634176.NT05HA_0498	Phage head-tail joining protein	NA
UHGV-0172489_29	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0172489_29	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-0172489_29	COG	COG5614	Phage head-tail adaptor	NA
UHGV-0172489_29	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0172489_30	PHROG	phrog_40	head-tail adaptor Ad1	connector
UHGV-0172489_30	UniRef90	UniRef90_UPI000F63D7A0	head-tail connector protein	NA
UHGV-0172489_30	eggNOG-mapper	1348908.KI518589_gene2534	Phage gp6-like head-tail connector protein	NA
UHGV-0172489_30	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0172489_30	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-0172489_30	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0172489_31	PHROG	phrog_10	major head protein	head and packaging
UHGV-0172489_31	UniRef90	UniRef90_A0A1Y4UTW1	Phage major capsid protein	NA
UHGV-0172489_31	eggNOG-mapper	742740.HMPREF9474_04304	Phage capsid family	NA
UHGV-0172489_31	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0172489_31	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0172489_31	Structural annotation	PF05065, PF09032, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0172489_32	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0172489_32	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0172489_32	UniRef90	UniRef90_A0A3D4EJM3	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-0172489_32	eggNOG-mapper	272623.L34899	Belongs to the peptidase S14 family	NA
UHGV-0172489_32	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0172489_32	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0172489_32	Structural annotation	PF00574, MF_00444, NF011090, COG0740	NA	NA
UHGV-0172489_33	PHROG	phrog_12	portal protein	head and packaging
UHGV-0172489_33	UniRef90	UniRef90_A0A3D4EI33	Phage portal protein	NA
UHGV-0172489_33	eggNOG-mapper	1501230.ET33_02290	Phage portal protein	NA
UHGV-0172489_33	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0172489_33	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0172489_33	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0172489_33	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0172489_35	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0172489_35	UniRef90	UniRef90_A0A3D4EH51	Terminase large subunit	NA
UHGV-0172489_35	eggNOG-mapper	693746.OBV_20000	Phage terminase-like protein large subunit	NA
UHGV-0172489_35	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0172489_35	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0172489_35	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0172489_35	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-0172489_36	PHROG	phrog_83	terminase small subunit	head and packaging
UHGV-0172489_36	eggNOG-mapper	1120971.AUCA01000037_gene2894	Phage terminase small Subunit	NA
UHGV-0172489_36	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0172489_36	COG	COG3747	Phage terminase, small subunit	NA
UHGV-0172489_36	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0172489_37	PHROG	phrog_144	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0172489_37	UniRef90	UniRef90_A0A3D4EH89	HNH endonuclease	NA
UHGV-0172489_37	eggNOG-mapper	742738.HMPREF9460_00869	HNH endonuclease	NA
UHGV-0172489_37	AcrCatalog	cluster_19695	NA	NA
UHGV-0172489_37	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0172489_37	Structural annotation	PF05766	NA	NA
UHGV-0172489_38	eggNOG-mapper	742738.HMPREF9460_00868	Cysteine-rich KTR	NA
UHGV-0172489_38	Structural annotation	PF14205	NA	NA
UHGV-0172489_39	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0172489_39	eggNOG-mapper	742738.HMPREF9460_04063	NA	NA
UHGV-0172489_39	Structural annotation	PF01446	NA	NA
UHGV-0172489_44	Structural annotation	NF007271	NA	NA
UHGV-0172489_46	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-0172489_46	PHROG	phrog_27290	NA	unknown function
UHGV-0172489_46	UniRef90	UniRef90_UPI001C029D7C	ParB N-terminal domain-containing protein	NA
UHGV-0172489_46	eggNOG-mapper	742738.HMPREF9460_00856	ParB-like nuclease domain	NA
UHGV-0172489_46	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0172489_46	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0172489_46	Structural annotation	PF12961, PF02195, MF_02015, MF_00684, TIGR04285, NF003443, COG1475, COG3097	NA	NA
UHGV-0172489_48	KOfam	K03496	parA, soj; chromosome partitioning protein	NA
UHGV-0172489_48	PHROG	phrog_164	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0172489_48	UniRef90	UniRef90_UPI000318E277	ParA family protein	NA
UHGV-0172489_48	eggNOG-mapper	1007096.BAGW01000033_gene1614	4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family	NA
UHGV-0172489_48	Pfam	PF13614	AAA domain	AAA_31
UHGV-0172489_48	COG	COG1192	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	NA
UHGV-0172489_48	Structural annotation	PF13614, MF_00533, TIGR03453, COG1192	NA	NA
UHGV-0172489_49	Structural annotation	COG2139	NA	NA
UHGV-0172489_50	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-0172489_50	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0172489_50	UniRef90	UniRef90_UPI00195856D7	AAA family ATPase	NA
UHGV-0172489_50	eggNOG-mapper	693746.OBV_27440	DnaB-like helicase N terminal domain	NA
UHGV-0172489_50	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-0172489_50	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0172489_50	COG	COG0305	Replicative DNA helicase	NA
UHGV-0172489_50	Structural annotation	PF03796, PF00772, MF_04155, NF005240, COG0305	NA	NA
UHGV-0172489_51	PHROG	phrog_270	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0172489_51	UniRef90	UniRef90_UPI001F3D92C2	helix-turn-helix domain-containing protein	NA
UHGV-0172489_51	eggNOG-mapper	742738.HMPREF9460_00851	Helix-turn-helix domain	NA
UHGV-0172489_51	Pfam	PF13730	Helix-turn-helix domain	HTH_36
UHGV-0172489_51	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0172489_51	Structural annotation	PF04182, NF040939, COG3355	NA	NA
UHGV-0172489_53	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0172489_53	Structural annotation	PF13560, MF_00535, NF041951, COG3655	NA	NA
UHGV-0172489_54	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0172489_54	PHROG	phrog_6499	transcriptional regulator	transcription regulation
UHGV-0172489_54	eggNOG-mapper	742738.HMPREF9460_00847	Helix-turn-helix XRE-family like proteins	NA
UHGV-0172489_54	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0172489_54	COG	COG1813	Archaeal ribosome-binding protein aMBF1, putative translation factor, contains Zn-ribbon and HTH domains	NA
UHGV-0172489_55	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0172489_55	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0172489_55	UniRef90	UniRef90_A0A352DNS0	XRE family transcriptional regulator	NA
UHGV-0172489_55	eggNOG-mapper	638303.Thal_0018	PBP superfamily domain	NA
UHGV-0172489_55	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0172489_55	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0172489_55	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0172489_56	UniRef90	UniRef90_UPI001E54DE4F	helix-turn-helix domain-containing protein	NA
UHGV-0172489_56	eggNOG-mapper	1226322.HMPREF1545_00148	Transcriptional	NA
UHGV-0172489_56	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0172489_56	Structural annotation	PF08667, NF041951, COG3655	NA	NA
UHGV-0172489_57	PHROG	phrog_10292	NA	unknown function
UHGV-0172489_57	eggNOG-mapper	411471.SUBVAR_05817	NA	NA
UHGV-0172489_57	Pfam	PF08797	HIRAN domain	HIRAN
UHGV-0172489_57	Pfam	PF13240	zinc-ribbon domain	zinc_ribbon_2
UHGV-0172489_57	Pfam	PF17032	zinc-ribbon family	zinc_ribbon_15
UHGV-0172489_57	Pfam	PF05154	TM2 domain	TM2