UHGV-0172498

Genome information

Genome length 51,561 bps

CDS count 54

Completeness 78.25% (medium-quality)

geNomad score 0.9770

Prediction confidence Confident

Genome information
Genome ID	UHGV-0172498
vOTU ID	vOTU-018327
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_560108
BioSample	SAMN06233224
Country	Spain
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	78.25% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	16
CheckV host markers	3
Recoded stop codon	No

Viral signal
geNomad score	0.9770
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	54.12
Jumbo phage	No

Genome content
Genome length	51,561 bps
GC content	36.33%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	54
CDS density	94.28%
Average CDS length	902.50 bps
tRNA count	1
Suppressor tRNA genes	1

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0172498_5	KOfam	K06919	K06919; putative DNA primase/helicase	NA
UHGV-0172498_5	PHROG	phrog_1156	DNA primase	DNA, RNA and nucleotide metabolism
UHGV-0172498_5	UniRef90	UniRef90_A0A1V4VEA1	SF3 helicase domain-containing protein	NA
UHGV-0172498_5	eggNOG-mapper	717606.PaecuDRAFT_3585	Phage plasmid primase, P4 family	NA
UHGV-0172498_5	Pfam	PF09250	Bifunctional DNA primase/polymerase, N-terminal	Prim-Pol
UHGV-0172498_5	Pfam	PF08708	Primase C terminal 1 (PriCT-1)	PriCT_1
UHGV-0172498_5	Pfam	PF08706	D5 N terminal like	D5_N
UHGV-0172498_5	Pfam	PF19263	NA	DUF5906
UHGV-0172498_5	Pfam	PF03288	Poxvirus D5 protein-like	Pox_D5
UHGV-0172498_5	NCBIFam	TIGR01613.1	phage/plasmid primase, P4 family	NA
UHGV-0172498_5	COG	COG3378	DNA primase, phage- or plasmid-associated	NA
UHGV-0172498_5	Structural annotation	PF08706, PF05272, PF02257, MF_04000, NF011296, COG3378, COG4983	NA	NA
UHGV-0172498_6	KOfam	K10747	LIG1; DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]	NA
UHGV-0172498_6	PHROG	phrog_114	ATP-dependent DNA ligase	DNA, RNA and nucleotide metabolism
UHGV-0172498_6	UniRef90	UniRef90_UPI00046570BB	ATP-dependent DNA ligase	NA
UHGV-0172498_6	eggNOG-mapper	1121121.KB894295_gene4492	dna ligase	NA
UHGV-0172498_6	Pfam	PF01068	ATP dependent DNA ligase domain	DNA_ligase_A_M
UHGV-0172498_6	COG	COG1793	ATP-dependent DNA ligase	NA
UHGV-0172498_6	Structural annotation	PF01068, MF_00407, TIGR02779, COG1793	NA	NA
UHGV-0172498_8	Pfam	PF13518	Helix-turn-helix domain	HTH_28
UHGV-0172498_8	Pfam	PF13384	Homeodomain-like domain	HTH_23
UHGV-0172498_9	PHROG	phrog_338	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0172498_9	Pfam	PF14279	HNH endonuclease	HNH_5
UHGV-0172498_10	KOfam	K03091	sigH; RNA polymerase sporulation-specific sigma factor	NA
UHGV-0172498_10	PHROG	phrog_1981	NA	unknown function
UHGV-0172498_10	eggNOG-mapper	319522.G8EJR4_9CAUD	nucleic acid binding	NA
UHGV-0172498_10	Pfam	PF04542	Sigma-70 region 2	Sigma70_r2
UHGV-0172498_11	KOfam	K01449	cwlJ, sleB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0172498_11	PHROG	phrog_14642	endolysin	lysis
UHGV-0172498_11	UniRef90	UniRef90_A0A077J2X8	Hydrolase_2 domain-containing protein	NA
UHGV-0172498_11	eggNOG-mapper	545693.BMQ_1284	COG3773 Cell wall hydrolyses involved in spore germination	NA
UHGV-0172498_11	Pfam	PF07486	Cell Wall Hydrolase	Hydrolase_2
UHGV-0172498_11	COG	COG1388	LysM repeat	NA
UHGV-0172498_11	Structural annotation	PF07486, TIGR02869, COG3773	NA	NA
UHGV-0172498_12	KOfam	K03465	thyX, thy1; thymidylate synthase (FAD) [EC:2.1.1.148]	NA
UHGV-0172498_12	PHROG	phrog_85	thymidylate synthase	DNA, RNA and nucleotide metabolism
UHGV-0172498_12	UniRef90	UniRef90_A0A843GTL2	FAD-dependent thymidylate synthase	NA
UHGV-0172498_12	eggNOG-mapper	589865.DaAHT2_0838	Catalyzes the reductive methylation of 2'-deoxyuridine- 5'-monophosphate (dUMP) to 2'-deoxythymidine-5'-monophosphate (dTMP) while utilizing 5,10-methylenetetrahydrofolate (mTHF) as the methyl donor, and NADPH and FADH(2) as the reductant	NA
UHGV-0172498_12	Pfam	PF02511	Thymidylate synthase complementing protein	Thy1
UHGV-0172498_12	COG	COG1351	Thymidylate synthase ThyX, FAD-dependent family	NA
UHGV-0172498_12	Structural annotation	PF02511, MF_01408, TIGR02170, COG1351	NA	NA
UHGV-0172498_13	KOfam	K04068	nrdG; anaerobic ribonucleoside-triphosphate reductase activating protein [EC:1.97.1.4]	NA
UHGV-0172498_13	PHROG	phrog_626	anaerobic ribonucleotide reductase small subunit	DNA, RNA and nucleotide metabolism
UHGV-0172498_13	UniRef90	UniRef90_UPI001D082DE9	anaerobic ribonucleoside-triphosphate reductase activating protein	NA
UHGV-0172498_13	eggNOG-mapper	1449050.JNLE01000003_gene315	Activation of anaerobic ribonucleoside-triphosphate reductase under anaerobic conditions by generation of an organic free radical, using S-adenosylmethionine and reduced flavodoxin as cosubstrates to produce 5'-deoxy-adenosine	NA
UHGV-0172498_13	Pfam	PF13353	4Fe-4S single cluster domain	Fer4_12
UHGV-0172498_13	NCBIFam	TIGR02491.1	anaerobic ribonucleoside-triphosphate reductase activating protein	NA
UHGV-0172498_13	COG	COG0602	Organic radical activating enzyme NrdG/QueE	NA
UHGV-0172498_13	Structural annotation	PF13353, MF_00917, TIGR02491, COG0602	NA	NA
UHGV-0172498_14	KOfam	K21636	nrdD; ribonucleoside-triphosphate reductase (formate) [EC:1.1.98.6]	NA
UHGV-0172498_14	PHROG	phrog_487	NrdD-like anaerobic ribonucleotide reductase large subunit	moron, auxiliary metabolic gene and host takeover
UHGV-0172498_14	UniRef90	UniRef90_UPI00189779D0	anaerobic ribonucleoside-triphosphate reductase	NA
UHGV-0172498_14	eggNOG-mapper	478749.BRYFOR_09741	Ribonucleoside-triphosphate reductase	NA
UHGV-0172498_14	Pfam	PF03477	ATP cone domain	ATP-cone
UHGV-0172498_14	Pfam	PF13597	Anaerobic ribonucleoside-triphosphate reductase	NRDD
UHGV-0172498_14	NCBIFam	TIGR02487.1	anaerobic ribonucleoside-triphosphate reductase	NA
UHGV-0172498_14	COG	COG1328	Anaerobic ribonucleoside-triphosphate reductase	NA
UHGV-0172498_14	Structural annotation	PF13597, PF03477, MF_00440, NF006732, COG1328	NA	NA
UHGV-0172498_16	KOfam	K14440	SMARCAL1, HARP; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 [EC:5.6.2.-]	NA
UHGV-0172498_16	PHROG	phrog_62	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0172498_16	UniRef90	UniRef90_A0A0F9C2R5	Helicase C-terminal domain-containing protein (Fragment)	NA
UHGV-0172498_16	eggNOG-mapper	1408306.JHXX01000001_gene2220	Bacterial SNF2 helicase associated	NA
UHGV-0172498_16	PADLOC	ZorD1_00007	SWI2/SNF2 helicase, Mrr-like nuclease	Zorya
UHGV-0172498_16	Pfam	PF00176	SNF2-related domain	SNF2-rel_dom
UHGV-0172498_16	COG	COG0553	Superfamily II DNA or RNA helicase, SNF2 family	NA
UHGV-0172498_16	Structural annotation	PF00176, PF00271, MF_01821, NF041790, COG0553	NA	NA
UHGV-0172498_17	PHROG	phrog_1218	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0172498_17	UniRef90	UniRef90_A0A2G2J995	PDDEXK_1 domain-containing protein	NA
UHGV-0172498_17	Pfam	PF12705	PD-(D/E)XK nuclease superfamily	PDDEXK_1
UHGV-0172498_18	PHROG	phrog_124	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0172498_18	UniRef90	UniRef90_A0A7T8EPM5	RecA-like exonuclease	NA
UHGV-0172498_18	eggNOG-mapper	1499967.BAYZ01000197_gene3023	plasmid maintenance	NA
UHGV-0172498_18	Pfam	PF13479	AAA domain	AAA_24
UHGV-0172498_18	COG	COG1192	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	NA
UHGV-0172498_19	PHROG	phrog_2300	NA	unknown function
UHGV-0172498_19	UniRef90	UniRef90_A0A6N6MJ84	NA	NA
UHGV-0172498_19	Pfam	PF05037	NA	DUF669
UHGV-0172498_20	PHROG	phrog_229	MazG-like pyrophosphatase	other
UHGV-0172498_20	UniRef90	UniRef90_A0A7X8MNE2	AAA family ATPase	NA
UHGV-0172498_20	eggNOG-mapper	1167632.AJTR01000055_gene145	MazG nucleotide pyrophosphohydrolase domain	NA
UHGV-0172498_20	PADLOC	VakA	NA	Viperin
UHGV-0172498_20	Pfam	PF03819	MazG nucleotide pyrophosphohydrolase domain	MazG
UHGV-0172498_20	Pfam	PF01712	Deoxynucleoside kinase	dNK
UHGV-0172498_20	COG	COG1694	NTP pyrophosphatase, house-cleaning of non-canonical NTPs	NA
UHGV-0172498_21	KOfam	K01737	queD, ptpS, PTS; 6-pyruvoyltetrahydropterin/6-carboxytetrahydropterin synthase [EC:4.2.3.12 4.1.2.50]	NA
UHGV-0172498_21	PHROG	phrog_2389	QueD-like 6-pyruvoyl-tetrahydropterin synthase	moron, auxiliary metabolic gene and host takeover
UHGV-0172498_21	UniRef90	UniRef90_I7K941	6-carboxy-5,6,7,8-tetrahydropterin synthase	NA
UHGV-0172498_21	eggNOG-mapper	857293.CAAU_2026	synthase	NA
UHGV-0172498_21	Pfam	PF01242	6-pyruvoyl tetrahydropterin synthase	PTPS
UHGV-0172498_21	COG	COG0720	6-pyruvoyl-tetrahydropterin synthase	NA
UHGV-0172498_21	Structural annotation	PF01242, TIGR00039, COG0720	NA	NA
UHGV-0172498_22	KOfam	K10026	queE; 7-carboxy-7-deazaguanine synthase [EC:4.3.99.3]	NA
UHGV-0172498_22	PHROG	phrog_2076	QueE-like radical SAM domain	moron, auxiliary metabolic gene and host takeover
UHGV-0172498_22	UniRef90	UniRef90_A0A1T4YGC5	7-carboxy-7-deazaguanine synthase	NA
UHGV-0172498_22	eggNOG-mapper	857293.CAAU_2025	Catalyzes the complex heterocyclic radical-mediated conversion of 6-carboxy-5,6,7,8-tetrahydropterin (CPH4) to 7- carboxy-7-deazaguanine (CDG), a step common to the biosynthetic pathways of all 7-deazapurine-containing compounds	NA
UHGV-0172498_22	Pfam	PF04055	Radical SAM superfamily	Radical_SAM
UHGV-0172498_22	COG	COG0602	Organic radical activating enzyme NrdG/QueE	NA
UHGV-0172498_22	HAMAP	MF_00917	7-carboxy-7-deazaguanine synthase [queE]	NA
UHGV-0172498_22	Structural annotation	PF04055, MF_00917, TIGR04508, COG0602	NA	NA
UHGV-0172498_23	KOfam	K01495	GCH1, folE; GTP cyclohydrolase IA [EC:3.5.4.16]	NA
UHGV-0172498_23	PHROG	phrog_2197	GTP cyclohydrolase	other
UHGV-0172498_23	UniRef90	UniRef90_UPI00168B21A7	GTP cyclohydrolase I FolE	NA
UHGV-0172498_23	eggNOG-mapper	1499968.TCA2_2962	GTP cyclohydrolase	NA
UHGV-0172498_23	Pfam	PF01227	GTP cyclohydrolase I	GTP_cyclohydroI
UHGV-0172498_23	NCBIFam	NF006826.0	GTP cyclohydrolase I FolE	NA
UHGV-0172498_23	COG	COG0302	GTP cyclohydrolase I	NA
UHGV-0172498_23	HAMAP	MF_00223	GTP cyclohydrolase 1 [folE]	NA
UHGV-0172498_23	Structural annotation	PF01227, MF_00223, NF006825, COG0302	NA	NA
UHGV-0172498_24	UniRef90	UniRef90_A0A151ANM3	zf-trcl domain-containing protein	NA
UHGV-0172498_24	eggNOG-mapper	1211817.CCAT010000043_gene3519	Probable zinc-ribbon domain	NA
UHGV-0172498_24	Pfam	PF13451	Probable zinc-ribbon domain	zf-trcl
UHGV-0172498_24	COG	COG1278	Cold shock protein, CspA family	NA
UHGV-0172498_25	KOfam	K06920	queC; 7-cyano-7-deazaguanine synthase [EC:6.3.4.20]	NA
UHGV-0172498_25	PHROG	phrog_1550	QueC-like queuosine biosynthesis	moron, auxiliary metabolic gene and host takeover
UHGV-0172498_25	UniRef90	UniRef90_A0A7X8MNR1	7-cyano-7-deazaguanine synthase QueC	NA
UHGV-0172498_25	eggNOG-mapper	857293.CAAU_2027	Catalyzes the ATP-dependent conversion of 7-carboxy-7- deazaguanine (CDG) to 7-cyano-7-deazaguanine (preQ(0))	NA
UHGV-0172498_25	PADLOC	QueC_00001	QueC	CBASS
UHGV-0172498_25	Pfam	PF06508	Queuosine biosynthesis protein QueC	QueC
UHGV-0172498_25	COG	COG0603	7-cyano-7-deazaguanine synthase (queuosine biosynthesis)	NA
UHGV-0172498_25	Structural annotation	PF06508, MF_01633, TIGR00364, COG0603	NA	NA
UHGV-0172498_26	Structural annotation	PF01702, MF_01634, TIGR00432, COG0343	NA	NA
UHGV-0172498_27	KOfam	K02335	polA; DNA polymerase I [EC:2.7.7.7]	NA
UHGV-0172498_27	PHROG	phrog_17	DNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-0172498_27	UniRef90	UniRef90_A0A7X8MNE5	DNA polymerase I	NA
UHGV-0172498_27	eggNOG-mapper	992406.RIA_2082	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity	NA
UHGV-0172498_27	PADLOC	drt-cluster58	DRT	DRT
UHGV-0172498_27	Pfam	PF03167	Uracil DNA glycosylase superfamily	UDG
UHGV-0172498_27	Pfam	PF01612	3'-5' exonuclease	DNA_pol_A_exo1
UHGV-0172498_27	Pfam	PF00476	DNA polymerase family A	DNA_pol_A
UHGV-0172498_27	COG	COG0258	5'-3' exonuclease Xni/ExoIX (flap endonuclease)	NA
UHGV-0172498_30	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0172498_30	PHROG	phrog_1794	amidase	lysis
UHGV-0172498_30	UniRef90	UniRef90_A0A1Y3W9R1	N-acetylmuramoyl-L-alanine amidase domain-containing protein	NA
UHGV-0172498_30	eggNOG-mapper	411468.CLOSCI_00531	n-acetylmuramoyl-l-alanine amidase	NA
UHGV-0172498_30	Pfam	PF01832	Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase	Glucosaminidase
UHGV-0172498_30	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0172498_30	COG	COG1705	Flagellum-specific peptidoglycan hydrolase FlgJ	NA
UHGV-0172498_30	Structural annotation	PF01832, PF01510, MF_04111, NF038016, NF008758, COG1705, COG3023, COG4991	NA	NA
UHGV-0172498_32	PHROG	phrog_4176	tail fiber protein	tail
UHGV-0172498_34	PHROG	phrog_13879	NA	unknown function
UHGV-0172498_35	PHROG	phrog_1194	NA	unknown function
UHGV-0172498_35	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0172498_36	PHROG	phrog_1686	tail length tape measure protein	tail
UHGV-0172498_36	eggNOG-mapper	697281.Mahau_0585	tape measure	NA
UHGV-0172498_36	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-0172498_36	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-0172498_36	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0172498_38	PHROG	phrog_2115	tail protein	tail
UHGV-0172498_38	eggNOG-mapper	1120971.AUCA01000037_gene2905	NA	NA
UHGV-0172498_39	PHROG	phrog_88	major tail protein	tail
UHGV-0172498_39	UniRef90	UniRef90_A0A7X7BYA3	Phage tail protein	NA
UHGV-0172498_39	eggNOG-mapper	1382315.JPOI01000001_gene276	Phage major tail protein phi13	NA
UHGV-0172498_39	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0172498_39	COG	COG5276	NA	NA
UHGV-0172498_39	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-0172498_40	Pfam	PF12691	Bacteriophage minor capsid protein	Minor_capsid_3
UHGV-0172498_42	Structural annotation	PF10665, TIGR01563, COG5614	NA	NA
UHGV-0172498_43	PHROG	phrog_1732	NA	unknown function
UHGV-0172498_45	PHROG	phrog_1005	major head protein	head and packaging
UHGV-0172498_45	UniRef90	UniRef90_A0A316D4V5	Major capsid protein E	NA
UHGV-0172498_45	eggNOG-mapper	562742.F4YXT5_9CAUD	Phage major capsid protein E	NA
UHGV-0172498_45	Structural annotation	PF03864, MF_04133, NF041162, COG1659	NA	NA
UHGV-0172498_47	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0172498_47	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0172498_47	UniRef90	UniRef90_A0A510KRA7	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-0172498_47	eggNOG-mapper	1122173.AXVL01000039_gene2436	Belongs to the peptidase S14 family	NA
UHGV-0172498_47	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0172498_47	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0172498_48	PHROG	phrog_113	portal protein	head and packaging
UHGV-0172498_48	UniRef90	UniRef90_A0A448W1F8	Mu-like prophage protein gp29	NA
UHGV-0172498_48	eggNOG-mapper	1235793.C809_02225	Mu-like prophage protein gp29	NA
UHGV-0172498_48	Pfam	PF06074	NA	DUF935
UHGV-0172498_48	COG	COG4383	NA	NA
UHGV-0172498_48	Structural annotation	PF06074, MF_04135, TIGR01537, COG4383	NA	NA
UHGV-0172498_49	eggNOG-mapper	411470.RUMGNA_00254	NA	NA
UHGV-0172498_50	PHROG	phrog_4105	NA	unknown function
UHGV-0172498_51	PHROG	phrog_979	terminase large subunit	head and packaging
UHGV-0172498_51	UniRef90	UniRef90_A0A7X7BY57	Terminase_6C domain-containing protein	NA
UHGV-0172498_51	eggNOG-mapper	77048.O80199_9CAUD	Terminase-like family	NA
UHGV-0172498_51	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0172498_51	Pfam	PF17289	Terminase RNaseH-like domain	Terminase_6C
UHGV-0172498_51	NCBIFam	TIGR01630.1	phage terminase large subunit	NA
UHGV-0172498_51	Structural annotation	PF04466, PF17289, MF_04145, TIGR01547, COG5323	NA	NA
UHGV-0172498_52	PHROG	phrog_6299	terminase small subunit	head and packaging
UHGV-0172498_53	Pfam	PF14420	Clr5 domain	Clr5
UHGV-0172498_53	Pfam	PF13384	Homeodomain-like domain	HTH_23