UHGV-0172519

Genome information

vOTU vOTU-061924

Genome length 39,318 bps

CDS count 46

Completeness 92.32% (high-quality)

geNomad score 0.9780

Prediction confidence Confident

Genome information
Genome ID	UHGV-0172519
vOTU ID	vOTU-061924
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_572278
BioSample	SAMN06348191
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	92.32% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	21
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9780
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	61.03
Jumbo phage	No

Genome content
Genome length	39,318 bps
GC content	39.31%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	46
CDS density	89.58%
Average CDS length	768.72 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0172519_1	KOfam	K07755	AS3MT; arsenite methyltransferase [EC:2.1.1.137]	NA
UHGV-0172519_1	PHROG	phrog_4752	tRNA methyltransferase	other
UHGV-0172519_1	UniRef90	UniRef90_A0A174TNM4	Class I SAM-dependent methyltransferase	NA
UHGV-0172519_1	eggNOG-mapper	585394.RHOM_01050	Methyltransferase domain protein	NA
UHGV-0172519_1	Pfam	PF08241	Methyltransferase domain	Methyltransf_11
UHGV-0172519_1	COG	COG0500	SAM-dependent methyltransferase	NA
UHGV-0172519_2	eggNOG-mapper	411469.EUBHAL_01069	NA	NA
UHGV-0172519_3	KOfam	K14059	int; integrase	NA
UHGV-0172519_3	PHROG	phrog_1	integrase	integration and excision
UHGV-0172519_3	UniRef90	UniRef90_A0A173S3V2	Tyrosine recombinase XerD	NA
UHGV-0172519_3	eggNOG-mapper	742740.HMPREF9474_02388	Belongs to the 'phage' integrase family	NA
UHGV-0172519_3	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0172519_3	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0172519_3	Structural annotation	PF00589, MF_01808, NF007246, COG4974	NA	NA
UHGV-0172519_4	PHROG	phrog_4980	superinfection exclusion	moron, auxiliary metabolic gene and host takeover
UHGV-0172519_4	UniRef90	UniRef90_UPI00191E8510	Ltp family lipoprotein	NA
UHGV-0172519_4	eggNOG-mapper	1120998.AUFC01000030_gene2202	Membrane	NA
UHGV-0172519_4	Pfam	PF07553	Host cell surface-exposed lipoprotein	Lipoprotein_Ltp
UHGV-0172519_4	COG	COG3064	Membrane protein TolA involved in colicin uptake	NA
UHGV-0172519_4	Structural annotation	PF18933, PF02631, MF_02248, MF_01114, NF008627, NF001062, COG5435, COG2137	NA	NA
UHGV-0172519_5	PHROG	phrog_87	metallo-protease	other
UHGV-0172519_5	UniRef90	UniRef90_A0A173S221	Metallopeptidase immA	NA
UHGV-0172519_5	eggNOG-mapper	411460.RUMTOR_02055	IrrE N-terminal-like domain	NA
UHGV-0172519_5	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0172519_5	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0172519_5	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0172519_6	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0172519_6	PHROG	phrog_2967	transcriptional regulator	transcription regulation
UHGV-0172519_6	UniRef90	UniRef90_UPI00156FC18E	helix-turn-helix domain-containing protein	NA
UHGV-0172519_6	eggNOG-mapper	411460.RUMTOR_02056	Bacteriophage CI repressor helix-turn-helix domain	NA
UHGV-0172519_6	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0172519_6	COG	COG3093	Plasmid maintenance system antidote protein VapI, contains XRE-type HTH domain	NA
UHGV-0172519_6	Structural annotation	PF12844, NF041951, COG1396	NA	NA
UHGV-0172519_7	UniRef90	UniRef90_UPI00156F72A2	NA	NA
UHGV-0172519_7	eggNOG-mapper	1229751.R9QLK3_9CAUD	NA	NA
UHGV-0172519_7	Pfam	PF05339	NA	DUF739
UHGV-0172519_7	Structural annotation	PF05339, NF002773, COG1476	NA	NA
UHGV-0172519_11	PHROG	phrog_18562	NA	unknown function
UHGV-0172519_11	eggNOG-mapper	717606.PaecuDRAFT_3099	NA	NA
UHGV-0172519_12	PHROG	phrog_69	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0172519_12	UniRef90	UniRef90_R7MZ29	NA	NA
UHGV-0172519_12	eggNOG-mapper	469618.FVAG_01292	NA	NA
UHGV-0172519_12	Pfam	PF10926	NA	DUF2800
UHGV-0172519_12	COG	COG2887	RecB family exonuclease	NA
UHGV-0172519_12	Structural annotation	PF10926, MF_03030, TIGR00372, COG2887	NA	NA
UHGV-0172519_13	PHROG	phrog_112	Gp2.5-like ssDNA binding protein and ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0172519_13	UniRef90	UniRef90_UPI0009F98B20	NA	NA
UHGV-0172519_13	eggNOG-mapper	1449126.JQKL01000006_gene839	NA	NA
UHGV-0172519_13	Pfam	PF10991	Enterobacter phage Enc34, ssDNA-binding protein	Enc34_ssDNA-bd
UHGV-0172519_13	Structural annotation	PF10991, MF_04153, NF005241	NA	NA
UHGV-0172519_14	KOfam	K02334	dpo; DNA polymerase bacteriophage-type [EC:2.7.7.7]	NA
UHGV-0172519_14	PHROG	phrog_17	DNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-0172519_14	UniRef90	UniRef90_A0A173S361	DNA polymerase I, thermostable	NA
UHGV-0172519_14	eggNOG-mapper	86416.Clopa_0561	DNA polymerase	NA
UHGV-0172519_14	Pfam	PF00476	DNA polymerase family A	DNA_pol_A
UHGV-0172519_14	COG	COG0749	DNA polymerase I, 3'-5' exonuclease and polymerase domains	NA
UHGV-0172519_14	Structural annotation	PF00476, MF_04101, NF011540, COG0749	NA	NA
UHGV-0172519_15	PHROG	phrog_256	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0172519_15	UniRef90	UniRef90_A0A173S1C5	Predicted P-loop ATPase and inactivated derivatives	NA
UHGV-0172519_15	eggNOG-mapper	1321778.HMPREF1982_02544	Virulence-associated protein E	NA
UHGV-0172519_15	Pfam	PF05272	Virulence-associated protein E-like domain	VapE-like_dom
UHGV-0172519_15	COG	COG5545	Predicted P-loop ATPase and inactivated derivatives	NA
UHGV-0172519_15	Structural annotation	PF05272, MF_04000, NF005477, NF040562, COG5545	NA	NA
UHGV-0172519_16	PHROG	phrog_93	endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0172519_16	UniRef90	UniRef90_A0A173S1G6	VRR-NUC domain	NA
UHGV-0172519_16	eggNOG-mapper	86416.Clopa_0565	VRR-NUC domain-containing protein	NA
UHGV-0172519_16	Structural annotation	PF01870, MF_00130, NF002584, COG1591	NA	NA
UHGV-0172519_17	KOfam	K14440	SMARCAL1, HARP; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 [EC:5.6.2.-]	NA
UHGV-0172519_17	PHROG	phrog_62	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0172519_17	UniRef90	UniRef90_A0A173S305	DNA methylase	NA
UHGV-0172519_17	eggNOG-mapper	86416.Clopa_0567	snf2 family	NA
UHGV-0172519_17	PADLOC	DpdE_00010	DpdE	DPD
UHGV-0172519_17	Pfam	PF00176	SNF2-related domain	SNF2-rel_dom
UHGV-0172519_17	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-0172519_17	COG	COG0553	Superfamily II DNA or RNA helicase, SNF2 family	NA
UHGV-0172519_17	Structural annotation	PF13872, PF16203, MF_01821, NF041790, COG0553	NA	NA
UHGV-0172519_18	PHROG	phrog_31515	NA	unknown function
UHGV-0172519_18	Structural annotation	PF07338, NF033776	NA	NA
UHGV-0172519_19	Structural annotation	MF_00773, NF011481, COG2888	NA	NA
UHGV-0172519_20	UniRef90	UniRef90_L1Q0F3	DNA-binding helix-turn-helix protein	NA
UHGV-0172519_21	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0172519_21	UniRef90	UniRef90_R6ZAS5	GED domain-containing protein	NA
UHGV-0172519_21	eggNOG-mapper	411490.ANACAC_00789	NA	NA
UHGV-0172519_21	Structural annotation	PF02996	NA	NA
UHGV-0172519_23	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0172519_23	PHROG	phrog_2606	terminase small subunit	head and packaging
UHGV-0172519_23	UniRef90	UniRef90_A0A1Q2CAR6	Phage portal protein	NA
UHGV-0172519_23	eggNOG-mapper	1304866.K413DRAFT_3033	terminase, small subunit	NA
UHGV-0172519_23	Pfam	PF06056	Putative ATPase subunit of terminase (gpP-like)	Terminase_5
UHGV-0172519_23	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0172519_23	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0172519_23	Structural annotation	PF03592, PF10668, NF040601, COG3728	NA	NA
UHGV-0172519_24	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0172519_24	PHROG	phrog_10250	NA	unknown function
UHGV-0172519_24	UniRef90	UniRef90_A0A1Q2C436	Terminase	NA
UHGV-0172519_24	eggNOG-mapper	411490.ANACAC_00783	Phage terminase, large subunit, PBSX family	NA
UHGV-0172519_24	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0172519_24	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0172519_24	COG	COG1783	Phage terminase large subunit	NA
UHGV-0172519_24	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0172519_25	PHROG	phrog_533	portal protein	head and packaging
UHGV-0172519_25	UniRef90	UniRef90_A0A1Q2C496	Phage capsid protein	NA
UHGV-0172519_25	eggNOG-mapper	411490.ANACAC_00782	NA	NA
UHGV-0172519_25	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0172519_25	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0172519_26	KOfam	K11044	spyA; C3 family ADP-ribosyltransferase [EC:2.4.2.-]	NA
UHGV-0172519_26	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0172519_26	UniRef90	UniRef90_A0A1Q6KF97	ADPrib_exo_Tox domain-containing protein	NA
UHGV-0172519_26	eggNOG-mapper	411490.ANACAC_00781	NA	NA
UHGV-0172519_26	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0172519_26	Pfam	PF03496	ADP-ribosyltransferase exoenzyme	ADPrib_exo_Tox
UHGV-0172519_26	COG	COG2369	NA	NA
UHGV-0172519_26	Structural annotation	PF06152, PF03496, MF_04139, NF041404	NA	NA
UHGV-0172519_28	PHROG	phrog_3675	NA	unknown function
UHGV-0172519_28	UniRef90	UniRef90_UPI001C02868E	YjcQ family protein	NA
UHGV-0172519_28	eggNOG-mapper	1235799.C818_04221	YjcQ protein	NA
UHGV-0172519_28	Pfam	PF09639	YjcQ protein	YjcQ
UHGV-0172519_28	Structural annotation	PF09639, TIGR04176, COG2345	NA	NA
UHGV-0172519_29	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0172519_29	UniRef90	UniRef90_B0MB52	Phage minor structural protein GP20	NA
UHGV-0172519_29	eggNOG-mapper	411490.ANACAC_00778	COG NOG36366 non supervised orthologous group	NA
UHGV-0172519_29	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0172519_29	Structural annotation	PF06810, MF_02110	NA	NA
UHGV-0172519_30	PHROG	phrog_247	major head protein	head and packaging
UHGV-0172519_30	UniRef90	UniRef90_A0A1Q2C3W4	Phage coat protein	NA
UHGV-0172519_30	eggNOG-mapper	445335.CBN_1379	NA	NA
UHGV-0172519_30	COG	COG1106	ATPase/GTPase, AAA15 family	NA
UHGV-0172519_30	Structural annotation	PF20036, MF_04113, TIGR04387, COG4653	NA	NA
UHGV-0172519_31	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0172519_31	eggNOG-mapper	411490.ANACAC_00776	NA	NA
UHGV-0172519_32	PHROG	phrog_3366	NA	unknown function
UHGV-0172519_32	eggNOG-mapper	1235799.C818_04225	NA	NA
UHGV-0172519_32	Pfam	PF20536	NA	DUF6751
UHGV-0172519_32	Structural annotation	PF20536, TIGR01563, COG5614	NA	NA
UHGV-0172519_33	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0172519_33	UniRef90	UniRef90_UPI001C012488	minor capsid protein	NA
UHGV-0172519_33	eggNOG-mapper	411490.ANACAC_00774	Minor capsid protein	NA
UHGV-0172519_33	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0172519_33	Structural annotation	PF11114	NA	NA
UHGV-0172519_34	PHROG	phrog_3266	tail completion	connector
UHGV-0172519_34	UniRef90	UniRef90_A0A417QFW9	Chloramphenicol resistance protein	NA
UHGV-0172519_34	eggNOG-mapper	1235799.C818_04227	NA	NA
UHGV-0172519_34	Structural annotation	PF12691	NA	NA
UHGV-0172519_35	PHROG	phrog_3099	NA	unknown function
UHGV-0172519_35	eggNOG-mapper	545697.HMPREF0216_02855	NA	NA
UHGV-0172519_35	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0172519_36	PHROG	phrog_4450	NA	unknown function
UHGV-0172519_36	eggNOG-mapper	1235799.C818_04229	NA	NA
UHGV-0172519_36	Pfam	PF20378	NA	DUF6673
UHGV-0172519_36	Structural annotation	PF20378	NA	NA
UHGV-0172519_37	PHROG	phrog_706	NA	unknown function
UHGV-0172519_37	UniRef90	UniRef90_A0A6N2R3Z6	Bacteriophage Gp15 protein	NA
UHGV-0172519_37	eggNOG-mapper	1235799.C818_04230	Bacteriophage Gp15 protein	NA
UHGV-0172519_37	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0172519_37	Structural annotation	PF06854	NA	NA
UHGV-0172519_39	eggNOG-mapper	537013.CLOSTMETH_00118	NA	NA
UHGV-0172519_40	PHROG	phrog_1726	anti-repressor	transcription regulation
UHGV-0172519_40	UniRef90	UniRef90_UPI00156E29B0	Rha family transcriptional regulator	NA
UHGV-0172519_40	eggNOG-mapper	742738.HMPREF9460_02487	Phage regulatory protein Rha (Phage_pRha)	NA
UHGV-0172519_40	Pfam	PF09669	Phage regulatory protein Rha (Phage_pRha)	Phage_pRha
UHGV-0172519_40	NCBIFam	TIGR02681.1	phage regulatory protein, Rha family	NA
UHGV-0172519_40	COG	COG3561	Phage anti-repressor protein Ant	NA
UHGV-0172519_40	Structural annotation	PF09669, TIGR02681, COG3646	NA	NA
UHGV-0172519_42	PHROG	phrog_19323	NA	unknown function
UHGV-0172519_42	UniRef90	UniRef90_UPI00191F19EB	SHOCT domain-containing protein	NA
UHGV-0172519_42	eggNOG-mapper	290402.Cbei_1346	NA	NA
UHGV-0172519_42	Pfam	PF09851	Short C-terminal domain	SHOCT
UHGV-0172519_43	KOfam	K20478	GOLGB1; golgin subfamily B member 1	NA
UHGV-0172519_43	PHROG	phrog_19074	NA	unknown function
UHGV-0172519_43	UniRef90	UniRef90_UPI0015703712	phage tail tape measure protein	NA
UHGV-0172519_43	eggNOG-mapper	1235799.C818_04231	Phage tail tape measure protein, TP901 family	NA
UHGV-0172519_43	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0172519_43	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0172519_43	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0172519_43	Structural annotation	PF10145, TIGR01760	NA	NA
UHGV-0172519_44	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0172519_44	UniRef90	UniRef90_A0A417USV5	MtfA protein	NA
UHGV-0172519_44	eggNOG-mapper	411490.ANACAC_00709	phage tail	NA
UHGV-0172519_44	COG	COG4722	Phage-related protein YomH	NA
UHGV-0172519_44	Structural annotation	PF05709, PF02408, TIGR01633, COG4722	NA	NA
UHGV-0172519_45	PHROG	phrog_3558	tail protein	tail
UHGV-0172519_45	UniRef90	UniRef90_A0A417UT74	Prophage_tail domain-containing protein	NA
UHGV-0172519_45	eggNOG-mapper	411490.ANACAC_00708	Phage minor structural protein	NA
UHGV-0172519_45	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0172519_45	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0172519_45	COG	COG4926	Phage-related protein	NA
UHGV-0172519_45	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0172519_46	PHROG	phrog_18608	NA	unknown function
UHGV-0172519_46	eggNOG-mapper	411473.RUMCAL_00421	tail collar domain protein	NA
UHGV-0172519_46	COG	COG4675	Phage tail collar domain	NA