UHGV-0172579

Genome information

Genome length 29,689 bps

CDS count 41

Completeness 84.36% (medium-quality)

geNomad score 0.9796

Prediction confidence Confident

Genome information
Genome ID	UHGV-0172579
vOTU ID	vOTU-028614
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_590725
BioSample	SAMN09781782
Country	Madagascar
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	84.36% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	8
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9796
Virus hallmark genes (geNomad)	12
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	27.99
Jumbo phage	No

Genome content
Genome length	29,689 bps
GC content	58.86%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	41
CDS density	91.64%
Average CDS length	666.29 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0172579_1	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-0172579_1	PHROG	phrog_27290	NA	unknown function
UHGV-0172579_1	UniRef90	UniRef90_A0A7X3DIE8	ParB domain-containing protein	NA
UHGV-0172579_1	eggNOG-mapper	1007096.BAGW01000033_gene1613	ParB-like nuclease domain	NA
UHGV-0172579_1	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0172579_1	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0172579_2	KOfam	K03496	parA, soj; chromosome partitioning protein	NA
UHGV-0172579_2	PHROG	phrog_164	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0172579_2	UniRef90	UniRef90_UPI001BB48231	ParA family protein	NA
UHGV-0172579_2	eggNOG-mapper	1007096.BAGW01000011_gene2363	Anion-transporting ATPase	NA
UHGV-0172579_2	Pfam	PF13614	AAA domain	AAA_31
UHGV-0172579_2	COG	COG1192	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	NA
UHGV-0172579_2	Structural annotation	PF13614, MF_00533, TIGR03453, COG1192	NA	NA
UHGV-0172579_4	PHROG	phrog_27610	NA	unknown function
UHGV-0172579_5	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-0172579_5	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0172579_5	UniRef90	UniRef90_UPI00195856D7	AAA family ATPase	NA
UHGV-0172579_5	eggNOG-mapper	1226322.HMPREF1545_00095	DnaB-like helicase N terminal domain	NA
UHGV-0172579_5	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-0172579_5	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0172579_5	COG	COG0305	Replicative DNA helicase	NA
UHGV-0172579_5	Structural annotation	PF03796, PF00772, MF_04155, NF005240, COG0305	NA	NA
UHGV-0172579_6	PHROG	phrog_428	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0172579_6	UniRef90	UniRef90_UPI0002DD08A7	helix-turn-helix domain-containing protein	NA
UHGV-0172579_6	eggNOG-mapper	693746.OBV_19830	DnaD domain protein	NA
UHGV-0172579_6	Pfam	PF13730	Helix-turn-helix domain	HTH_36
UHGV-0172579_6	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0172579_6	Structural annotation	PF20714, MF_01177, NF040582, COG3355	NA	NA
UHGV-0172579_7	PHROG	phrog_6499	transcriptional regulator	transcription regulation
UHGV-0172579_7	UniRef90	UniRef90_U2QJH6	DNA-binding helix-turn-helix protein	NA
UHGV-0172579_7	eggNOG-mapper	1226322.HMPREF1545_00092	Helix-turn-helix XRE-family like proteins	NA
UHGV-0172579_7	Pfam	PF13560	Helix-turn-helix domain	HTH_31
UHGV-0172579_7	COG	COG1813	Archaeal ribosome-binding protein aMBF1, putative translation factor, contains Zn-ribbon and HTH domains	NA
UHGV-0172579_7	Structural annotation	PF01381, NF040522, COG1476	NA	NA
UHGV-0172579_8	Structural annotation	PF12728, NF040990	NA	NA
UHGV-0172579_9	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-0172579_9	PHROG	phrog_3	transcriptional repressor	transcription regulation
UHGV-0172579_9	UniRef90	UniRef90_A0A645JJK5	HTH cro/C1-type domain-containing protein	NA
UHGV-0172579_9	eggNOG-mapper	553184.ATORI0001_1222	Helix-turn-helix XRE-family like proteins	NA
UHGV-0172579_9	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0172579_9	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0172579_9	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0172579_11	UniRef90	UniRef90_A0A1Y4C9D7	HTH cro/C1-type domain-containing protein	NA
UHGV-0172579_11	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0172579_11	COG	COG2932	Phage repressor protein C, contains Cro/C1-type HTH and peptisase s24 domains	NA
UHGV-0172579_11	Structural annotation	PF13443, NF041951, COG1396	NA	NA
UHGV-0172579_12	PHROG	phrog_17982	NA	unknown function
UHGV-0172579_12	eggNOG-mapper	1284686.HMPREF1630_01985	NA	NA
UHGV-0172579_12	Pfam	PF14020	NA	DUF4236
UHGV-0172579_12	Structural annotation	PF14020	NA	NA
UHGV-0172579_13	KOfam	K14059	int; integrase	NA
UHGV-0172579_13	PHROG	phrog_1	integrase	integration and excision
UHGV-0172579_13	UniRef90	UniRef90_A0A8F2JBJ7	Site-specific integrase	NA
UHGV-0172579_13	eggNOG-mapper	1507.HMPREF0262_00307	Phage integrase family	NA
UHGV-0172579_13	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0172579_13	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0172579_13	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0172579_13	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-0172579_14	UniRef90	UniRef90_A0A843GWV6	Rubrerythrin domain-containing protein	NA
UHGV-0172579_14	Structural annotation	PF02255, NF007156, COG1447	NA	NA
UHGV-0172579_16	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0172579_19	KOfam	K17733	cwlK; peptidoglycan LD-endopeptidase CwlK [EC:3.4.-.-]	NA
UHGV-0172579_19	PHROG	phrog_6523	endolysin	lysis
UHGV-0172579_19	UniRef90	UniRef90_R5RXG6	Serine-type D-Ala-D-Ala carboxypeptidase	NA
UHGV-0172579_19	eggNOG-mapper	1519439.JPJG01000023_gene536	D-alanyl-D-alanine carboxypeptidase	NA
UHGV-0172579_19	Pfam	PF13539	D-alanyl-D-alanine carboxypeptidase	Peptidase_M15_4
UHGV-0172579_19	COG	COG1876	LD-carboxypeptidase LdcB, LAS superfamily	NA
UHGV-0172579_19	Structural annotation	PF02557, MF_01924, NF000380, COG1876	NA	NA
UHGV-0172579_20	PHROG	phrog_13256	NA	unknown function
UHGV-0172579_20	eggNOG-mapper	1226322.HMPREF1545_00166	NA	NA
UHGV-0172579_22	PHROG	phrog_937	hemolysin	other
UHGV-0172579_22	eggNOG-mapper	1519439.JPJG01000023_gene533	NA	NA
UHGV-0172579_23	PHROG	phrog_27545	NA	unknown function
UHGV-0172579_23	UniRef90	UniRef90_A0A2V2GQB6	Chitin-binding type-3 domain-containing protein	NA
UHGV-0172579_23	eggNOG-mapper	1519439.JPJG01000060_gene1895	NA	NA
UHGV-0172579_23	Pfam	PF02839	Carbohydrate-binding module family 5/12	CBM_5_12
UHGV-0172579_23	Structural annotation	PF16170	NA	NA
UHGV-0172579_24	PHROG	phrog_10993	Hoc-like head decoration	head and packaging
UHGV-0172579_24	eggNOG-mapper	1121334.KB911071_gene1970	NA	NA
UHGV-0172579_24	Pfam	PF19789	NA	DUF6273
UHGV-0172579_24	Structural annotation	PF19789, PF07603	NA	NA
UHGV-0172579_25	PHROG	phrog_21962	tail protein	tail
UHGV-0172579_25	eggNOG-mapper	1519439.JPJG01000060_gene1892	Collagen triple helix repeat (20 copies)	NA
UHGV-0172579_25	COG	COG3064	Membrane protein TolA involved in colicin uptake	NA
UHGV-0172579_27	eggNOG-mapper	529884.Rhola_00002520	regulation of response to stimulus	NA
UHGV-0172579_27	Pfam	PF09479	Listeria-Bacteroides repeat domain (List_Bact_rpt)	Flg_new
UHGV-0172579_27	NCBIFam	TIGR02543.1	TIGR02543 family repeat protein	NA
UHGV-0172579_27	COG	COG4886	Leucine-rich repeat (LRR) protein	NA
UHGV-0172579_27	Structural annotation	PF21605, NF041825, COG3198	NA	NA
UHGV-0172579_28	eggNOG-mapper	1235797.C816_04179	Chaperone of endosialidase	NA
UHGV-0172579_28	Structural annotation	PF14594	NA	NA
UHGV-0172579_29	PHROG	phrog_6616	tail protein	tail
UHGV-0172579_29	UniRef90	UniRef90_A0A2Z4QA17	KID repeat-containing protein	NA
UHGV-0172579_29	eggNOG-mapper	1235797.C816_04180	NA	NA
UHGV-0172579_29	Structural annotation	PF21683, TIGR02126, COG4379	NA	NA
UHGV-0172579_30	Structural annotation	PF20458, TIGR01633, COG3499	NA	NA
UHGV-0172579_31	PHROG	phrog_23464	NA	unknown function
UHGV-0172579_31	UniRef90	UniRef90_UPI00189782F4	phage tail protein	NA
UHGV-0172579_31	eggNOG-mapper	33035.JPJF01000023_gene3232	phage tail tape measure protein	NA
UHGV-0172579_31	COG	COG5412	Phage-related protein	NA
UHGV-0172579_31	Structural annotation	TIGR01760, COG5280	NA	NA
UHGV-0172579_32	Structural annotation	PF11836, TIGR01674	NA	NA
UHGV-0172579_33	PHROG	phrog_88	major tail protein	tail
UHGV-0172579_33	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0172579_33	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-0172579_34	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0172579_34	UniRef90	UniRef90_R5IIS5	HK97 gp10 family phage protein	NA
UHGV-0172579_34	eggNOG-mapper	1203606.HMPREF1526_00974	NA	NA
UHGV-0172579_34	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-0172579_34	Structural annotation	TIGR01725	NA	NA
UHGV-0172579_35	eggNOG-mapper	1203606.HMPREF1526_00975	NA	NA
UHGV-0172579_35	Structural annotation	PF05657	NA	NA
UHGV-0172579_36	PHROG	phrog_1951	head-tail adaptor	connector
UHGV-0172579_36	UniRef90	UniRef90_UPI00189BA764	phage head closure protein	NA
UHGV-0172579_36	eggNOG-mapper	1033744.CAEL01000029_gene1279	head-tail adaptor	NA
UHGV-0172579_36	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-0172579_36	COG	COG5614	Phage head-tail adaptor	NA
UHGV-0172579_36	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0172579_37	PHROG	phrog_2550	NA	unknown function
UHGV-0172579_37	UniRef90	UniRef90_UPI0008717716	phage head-tail connector protein	NA
UHGV-0172579_37	eggNOG-mapper	1235798.C817_04586	NA	NA
UHGV-0172579_37	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0172579_38	PHROG	phrog_10	major head protein	head and packaging
UHGV-0172579_38	UniRef90	UniRef90_A0A3D1VAZ0	Phage major capsid protein	NA
UHGV-0172579_38	eggNOG-mapper	642492.Clole_0744	phage major capsid protein, HK97 family	NA
UHGV-0172579_38	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0172579_38	Pfam	PF18316	S-layer protein SbsC C-terminal domain	S-l_SbsC_C
UHGV-0172579_38	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0172579_38	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0172579_38	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0172579_39	KOfam	K06904	NA	NA
UHGV-0172579_39	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-0172579_39	UniRef90	UniRef90_A0A3D1VA27	HK97 family phage prohead protease	NA
UHGV-0172579_39	eggNOG-mapper	1235798.C817_04584	Phage prohead protease, HK97 family	NA
UHGV-0172579_39	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0172579_39	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-0172579_39	COG	COG3740	Phage head maturation protease	NA
UHGV-0172579_39	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0172579_40	PHROG	phrog_12	portal protein	head and packaging
UHGV-0172579_40	UniRef90	UniRef90_A0A3D1VH02	Phage portal protein	NA
UHGV-0172579_40	eggNOG-mapper	1121423.JONT01000042_gene1421	Phage portal protein, HK97 family	NA
UHGV-0172579_40	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0172579_40	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0172579_40	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0172579_40	Structural annotation	PF04860, MF_04120, TIGR01537, COG4695	NA	NA
UHGV-0172579_41	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0172579_41	UniRef90	UniRef90_A0A3D1VAR5	Terminase	NA
UHGV-0172579_41	eggNOG-mapper	1226322.HMPREF1545_00113	Phage Terminase	NA
UHGV-0172579_41	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0172579_41	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0172579_41	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0172579_41	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0172579_41	Structural annotation	PF03354, PF20441, PF05119, MF_04146, TIGR01547, TIGR01558, COG4626, COG3747	NA	NA