UHGV-0172721

Genome information

Genome length 40,321 bps

CDS count 66

Completeness 100.00% (complete)

geNomad score 0.9817

Prediction confidence Confident

Genome information
Genome ID	UHGV-0172721
vOTU ID	vOTU-046458
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_565062
BioSample	NA
Country	Spain
Virus prediction confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	18
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9817
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	42.86
Jumbo phage	No

Genome content
Genome length	40,321 bps
GC content	53.78%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	66
CDS density	88.88%
Average CDS length	545.82 bps
tRNA count	3
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0172721_1	PHROG	phrog_1863	NA	unknown function
UHGV-0172721_1	eggNOG-mapper	718252.FP2_04900	NA	NA
UHGV-0172721_2	PHROG	phrog_15303	NA	unknown function
UHGV-0172721_3	PHROG	phrog_918	NA	unknown function
UHGV-0172721_3	UniRef90	UniRef90_UPI000EC62F11	NA	NA
UHGV-0172721_3	eggNOG-mapper	411902.CLOBOL_05677	NA	NA
UHGV-0172721_3	Pfam	PF19791	NA	DUF6275
UHGV-0172721_3	Structural annotation	PF19791	NA	NA
UHGV-0172721_5	eggNOG-mapper	1235798.C817_04600	NA	NA
UHGV-0172721_5	Structural annotation	PF13560, NF040522	NA	NA
UHGV-0172721_7	PHROG	phrog_3754	NA	unknown function
UHGV-0172721_7	eggNOG-mapper	1485543.JMME01000025_gene2462	NA	NA
UHGV-0172721_8	PHROG	phrog_21718	NA	unknown function
UHGV-0172721_8	eggNOG-mapper	397290.C810_05210	NA	NA
UHGV-0172721_9	PHROG	phrog_22984	NA	unknown function
UHGV-0172721_10	PHROG	phrog_59	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0172721_10	UniRef90	UniRef90_A0A8I2AQR4	NUMOD4 motif-containing HNH endonuclease	NA
UHGV-0172721_10	eggNOG-mapper	357276.EL88_11520	HNH endonuclease domain protein	NA
UHGV-0172721_10	PADLOC	HEase_00016	homing endonuclease	RM
UHGV-0172721_10	Pfam	PF07463	NUMOD4 motif	NUMOD4
UHGV-0172721_10	Pfam	PF13392	HNH endonuclease	HNH_3
UHGV-0172721_10	Structural annotation	PF07463, PF07453	NA	NA
UHGV-0172721_11	PHROG	phrog_16490	NA	unknown function
UHGV-0172721_11	eggNOG-mapper	1408437.JNJN01000043_gene803	NA	NA
UHGV-0172721_12	PHROG	phrog_20016	NA	unknown function
UHGV-0172721_12	UniRef90	UniRef90_A0A285PT46	Tumour necrosis factor-like domain	NA
UHGV-0172721_12	eggNOG-mapper	1226322.HMPREF1545_00077	NA	NA
UHGV-0172721_12	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0172721_13	Structural annotation	PF12510	NA	NA
UHGV-0172721_15	KOfam	K14059	int; integrase	NA
UHGV-0172721_15	PHROG	phrog_1	integrase	integration and excision
UHGV-0172721_15	UniRef90	UniRef90_E2ZNV1	Site-specific recombinase, phage integrase family	NA
UHGV-0172721_15	eggNOG-mapper	748224.HMPREF9436_03382	Belongs to the 'phage' integrase family	NA
UHGV-0172721_15	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0172721_15	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0172721_15	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0172721_15	Structural annotation	PF00589, PF14659, MF_01808, NF007246, COG4973	NA	NA
UHGV-0172721_16	UniRef90	UniRef90_A0A6N7TLT0	Helix-turn-helix domain-containing protein	NA
UHGV-0172721_16	eggNOG-mapper	266265.Bxe_A3948	Helix-turn-helix domain	NA
UHGV-0172721_16	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0172721_16	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0172721_16	Structural annotation	PF13560, MF_00535, NF041951, COG1396	NA	NA
UHGV-0172721_19	PHROG	phrog_888	NA	unknown function
UHGV-0172721_19	UniRef90	UniRef90_A0A6N7TMA2	SHOCT domain-containing protein	NA
UHGV-0172721_19	eggNOG-mapper	1415774.U728_165	Short C-terminal domain	NA
UHGV-0172721_19	Pfam	PF09851	Short C-terminal domain	SHOCT
UHGV-0172721_19	Structural annotation	PF15947, PF14471	NA	NA
UHGV-0172721_21	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0172721_21	PHROG	phrog_2967	transcriptional regulator	transcription regulation
UHGV-0172721_21	UniRef90	UniRef90_A0A844DFR0	Helix-turn-helix domain-containing protein	NA
UHGV-0172721_21	eggNOG-mapper	748224.HMPREF9436_01444	NA	NA
UHGV-0172721_21	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0172721_21	Pfam	PF12844	Helix-turn-helix domain	HTH_19
UHGV-0172721_21	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0172721_21	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0172721_22	PHROG	phrog_32852	NA	unknown function
UHGV-0172721_25	eggNOG-mapper	760568.Desku_0919	NA	NA
UHGV-0172721_25	Structural annotation	PF03787, TIGR02581, COG1604	NA	NA
UHGV-0172721_26	UniRef90	UniRef90_UPI00130EBC54	NA	NA
UHGV-0172721_26	eggNOG-mapper	445972.ANACOL_01800	NA	NA
UHGV-0172721_26	COG	COG3655	DNA-binding transcriptional regulator, XRE family	NA
UHGV-0172721_26	Structural annotation	PF05339, MF_00535, NF041951, COG3655	NA	NA
UHGV-0172721_27	Structural annotation	PF12270, NF040944	NA	NA
UHGV-0172721_28	Structural annotation	PF09537	NA	NA
UHGV-0172721_30	Structural annotation	PF14120	NA	NA
UHGV-0172721_32	PHROG	phrog_7838	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0172721_32	UniRef90	UniRef90_A0A8D9UGW3	DNA repair protein RAD52-like protein	NA
UHGV-0172721_32	eggNOG-mapper	742767.HMPREF9456_02052	NA	NA
UHGV-0172721_32	Structural annotation	PF04098, TIGR00607, COG4380	NA	NA
UHGV-0172721_33	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0172721_33	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0172721_33	UniRef90	UniRef90_A0A844DI52	Single-stranded DNA-binding protein	NA
UHGV-0172721_33	eggNOG-mapper	718252.FP2_06770	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-0172721_33	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0172721_33	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0172721_33	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0172721_33	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0172721_33	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-0172721_34	PHROG	phrog_14105	NA	unknown function
UHGV-0172721_34	UniRef90	UniRef90_U2BMS0	Pentapeptide repeat protein	NA
UHGV-0172721_34	eggNOG-mapper	742740.HMPREF9474_02379	dextransucrase activity	NA
UHGV-0172721_34	COG	COG5263	Glucan-binding domain (YG repeat)	NA
UHGV-0172721_35	KOfam	K02086	dnaD; DNA replication protein	NA
UHGV-0172721_35	PHROG	phrog_186	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0172721_35	UniRef90	UniRef90_A0A844D5V0	DnaD domain protein	NA
UHGV-0172721_35	Pfam	PF19808	NA	DUF6291
UHGV-0172721_35	Pfam	PF07261	Replication initiation and membrane attachment	DnaB_2
UHGV-0172721_35	NCBIFam	TIGR01446.1	DnaD domain protein	NA
UHGV-0172721_35	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0172721_35	Structural annotation	PF19808, PF07261, TIGR01446, COG3935	NA	NA
UHGV-0172721_36	Structural annotation	PF11417	NA	NA
UHGV-0172721_39	PHROG	phrog_757	DNA methyltransferase	other
UHGV-0172721_39	UniRef90	UniRef90_UPI0013F6DA29	DNA cytosine methyltransferase	NA
UHGV-0172721_39	eggNOG-mapper	748224.HMPREF9436_03069	DNA (cytosine-5-)-methyltransferase activity	NA
UHGV-0172721_39	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0172721_41	PHROG	phrog_757	DNA methyltransferase	other
UHGV-0172721_41	UniRef90	UniRef90_A0A844DI13	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0172721_41	eggNOG-mapper	622312.ROSEINA2194_01264	C-5 cytosine-specific DNA methylase	NA
UHGV-0172721_41	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0172721_41	Structural annotation	PF00145	NA	NA
UHGV-0172721_43	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0172721_43	PHROG	phrog_34	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0172721_43	UniRef90	UniRef90_A0A844DBG8	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-0172721_43	eggNOG-mapper	875454.BAEW01000002_gene491	Endodeoxyribonuclease RusA	NA
UHGV-0172721_43	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0172721_43	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0172721_43	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0172721_45	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0172721_45	Structural annotation	PF07374, MF_00245, TIGR01636, COG2739	NA	NA
UHGV-0172721_46	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0172721_46	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0172721_46	UniRef90	UniRef90_A0A416S378	PBSX family phage terminase large subunit	NA
UHGV-0172721_46	eggNOG-mapper	665956.HMPREF1032_02957	Phage terminase, large subunit, PBSX family	NA
UHGV-0172721_46	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0172721_46	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0172721_46	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0172721_46	COG	COG1783	Phage terminase large subunit	NA
UHGV-0172721_46	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0172721_47	PHROG	phrog_64	portal protein	head and packaging
UHGV-0172721_47	UniRef90	UniRef90_A0A6N7TNT3	Phage portal protein	NA
UHGV-0172721_47	eggNOG-mapper	673376.F2VHW1_9CAUD	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0172721_47	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0172721_47	Structural annotation	PF05133, MF_04120, TIGR01538, COG3567	NA	NA
UHGV-0172721_49	PHROG	phrog_2468	head morphogenesis	head and packaging
UHGV-0172721_49	UniRef90	UniRef90_A0A844DBI4	Phage_Mu_F domain-containing protein	NA
UHGV-0172721_49	eggNOG-mapper	1504822.CCNO01000013_gene286	cell adhesion	NA
UHGV-0172721_49	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0172721_49	COG	COG2369	NA	NA
UHGV-0172721_49	Structural annotation	PF04233, TIGR01641, COG2369	NA	NA
UHGV-0172721_50	PHROG	phrog_8680	NA	unknown function
UHGV-0172721_50	UniRef90	UniRef90_A0A844D688	NA	NA
UHGV-0172721_50	eggNOG-mapper	1423790.BN53_04265	Belongs to the N(4) N(6)-methyltransferase family	NA
UHGV-0172721_50	Pfam	PF14386	NA	DUF4417
UHGV-0172721_50	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0172721_50	Structural annotation	PF14386	NA	NA
UHGV-0172721_52	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0172721_52	UniRef90	UniRef90_A0A844DDB3	HK97 gp10 family phage protein	NA
UHGV-0172721_52	eggNOG-mapper	929506.CbC4_1219	NA	NA
UHGV-0172721_52	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0172721_52	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-0172721_54	Structural annotation	PF06810	NA	NA
UHGV-0172721_55	PHROG	phrog_544	major head protein	head and packaging
UHGV-0172721_55	UniRef90	UniRef90_A0A1C6B5R0	S-l_SbsC_C domain-containing protein	NA
UHGV-0172721_55	eggNOG-mapper	476272.RUMHYD_01776	NA	NA
UHGV-0172721_55	Structural annotation	PF03864, MF_04119, TIGR04387, COG4834	NA	NA
UHGV-0172721_57	PHROG	phrog_17977	NA	unknown function
UHGV-0172721_57	UniRef90	UniRef90_A0A844DHJ8	Phage head closure protein	NA
UHGV-0172721_57	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-0172721_57	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-0172721_58	Structural annotation	PF13554	NA	NA
UHGV-0172721_59	PHROG	phrog_885	major tail protein	tail
UHGV-0172721_59	eggNOG-mapper	457396.CSBG_01054	Chitobiase/beta-hexosaminidase C-terminal domain	NA
UHGV-0172721_59	COG	COG2273	Beta-glucanase, GH16 family	NA
UHGV-0172721_59	Structural annotation	PF06488, TIGR01603, COG5437	NA	NA
UHGV-0172721_62	PHROG	phrog_28775	tail length tape measure protein	tail
UHGV-0172721_62	UniRef90	UniRef90_A0A844DDD5	Tape measure protein	NA
UHGV-0172721_62	eggNOG-mapper	1492737.FEM08_12070	tape measure	NA
UHGV-0172721_62	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-0172721_62	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-0172721_62	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0172721_62	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-0172721_63	UniRef90	UniRef90_R6QN45	Putative phage tail component domain protein	NA
UHGV-0172721_63	eggNOG-mapper	411490.ANACAC_00709	phage tail	NA
UHGV-0172721_63	COG	COG4722	Phage-related protein YomH	NA
UHGV-0172721_63	Structural annotation	PF05709, PF02408, TIGR01633, COG4722	NA	NA
UHGV-0172721_64	PHROG	phrog_3558	tail protein	tail
UHGV-0172721_64	UniRef90	UniRef90_UPI001C01D15B	phage tail protein	NA
UHGV-0172721_64	eggNOG-mapper	1235799.C818_04233	Prophage endopeptidase tail	NA
UHGV-0172721_64	COG	COG4926	Phage-related protein	NA
UHGV-0172721_64	Structural annotation	PF14594, TIGR01665, COG4379	NA	NA
UHGV-0172721_65	KOfam	K10804	tesA; acyl-CoA thioesterase I [EC:3.1.2.- 3.1.2.2 3.1.1.2 3.1.1.5]	NA
UHGV-0172721_65	PHROG	phrog_5240	tail fiber protein	tail
UHGV-0172721_65	UniRef90	UniRef90_UPI0015EBB5CE	SGNH/GDSL hydrolase family protein	NA
UHGV-0172721_65	eggNOG-mapper	1123298.KB904077_gene471	GDSL-like Lipase/Acylhydrolase family	NA
UHGV-0172721_65	Pfam	PF13472	GDSL-like Lipase/Acylhydrolase family	Lipase_GDSL_2
UHGV-0172721_65	COG	COG2755	Lysophospholipase L1 or related esterase. Includes spore coat protein LipC/YcsK	NA
UHGV-0172721_65	Structural annotation	PF13472, NF007819, COG2755	NA	NA
UHGV-0172721_66	KOfam	K07273	acm; lysozyme	NA
UHGV-0172721_66	PHROG	phrog_291	endolysin	lysis
UHGV-0172721_66	UniRef90	UniRef90_UPI001D0EE7D8	glycoside hydrolase family 25 protein	NA
UHGV-0172721_66	eggNOG-mapper	748224.HMPREF9436_00154	hydrolase, family 25	NA
UHGV-0172721_66	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0172721_66	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-0172721_66	Structural annotation	PF01183, COG3757	NA	NA