UHGV-0172790

Genome information

Genome length 26,679 bps

CDS count 39

Completeness 79.14% (medium-quality)

geNomad score 0.9550

Prediction confidence Confident

Genome information
Genome ID	UHGV-0172790
vOTU ID	vOTU-028628
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_576492
BioSample	SAMN07501040
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	79.14% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	18
CheckV host markers	2
Recoded stop codon	No

Viral signal
geNomad score	0.9550
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	41.44
Jumbo phage	No

Genome content
Genome length	26,679 bps
GC content	27.27%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	39
CDS density	87.04%
Average CDS length	596.92 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0172790_1	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-0172790_1	UniRef90	UniRef90_UPI001EDCB99B	NlpC/P60 family protein	NA
UHGV-0172790_1	eggNOG-mapper	190478.Q8SBN9_9CAUD	peptidoglycan catabolic process	NA
UHGV-0172790_1	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0172790_1	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0172790_1	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0172790_2	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0172790_2	UniRef90	UniRef90_A0A2Z3TT43	Phage tail protein	NA
UHGV-0172790_2	eggNOG-mapper	999411.HMPREF1092_03310	NA	NA
UHGV-0172790_2	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-0172790_2	NCBIFam	TIGR01633.1	distal tail protein Dit	NA
UHGV-0172790_2	COG	COG4722	Phage-related protein YomH	NA
UHGV-0172790_2	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-0172790_3	PHROG	phrog_991	tail length tape measure protein	tail
UHGV-0172790_3	UniRef90	UniRef90_UPI00096A2576	phage tail tape measure protein	NA
UHGV-0172790_3	eggNOG-mapper	190478.Q8SBP1_9CAUD	peptidoglycan catabolic process	NA
UHGV-0172790_3	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0172790_3	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0172790_3	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-0172790_4	PHROG	phrog_25901	NA	unknown function
UHGV-0172790_5	PHROG	phrog_13494	NA	unknown function
UHGV-0172790_5	UniRef90	UniRef90_Q8SBP2	Gp12 protein	NA
UHGV-0172790_5	eggNOG-mapper	195103.CPF_1578	NA	NA
UHGV-0172790_5	Structural annotation	PF20378	NA	NA
UHGV-0172790_6	PHROG	phrog_88	major tail protein	tail
UHGV-0172790_6	UniRef90	UniRef90_A0A2Z3TTW9	Phage tail protein	NA
UHGV-0172790_6	eggNOG-mapper	411459.RUMOBE_01728	phage major tail protein, phi13 family	NA
UHGV-0172790_6	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0172790_6	COG	COG5492	NA	NA
UHGV-0172790_6	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-0172790_7	PHROG	phrog_78	tail terminator	connector
UHGV-0172790_7	UniRef90	UniRef90_Q8SBP4	Gp10 protein	NA
UHGV-0172790_7	eggNOG-mapper	195103.CPF_1580	NA	NA
UHGV-0172790_7	Structural annotation	PF05657, NF040576, COG3167	NA	NA
UHGV-0172790_8	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0172790_8	UniRef90	UniRef90_A0A2X2Y2U7	HK97 family phage protein	NA
UHGV-0172790_8	eggNOG-mapper	195103.CPF_1581	Phage protein, HK97 gp10 family	NA
UHGV-0172790_8	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-0172790_8	Structural annotation	PF04883, TIGR01725	NA	NA
UHGV-0172790_9	PHROG	phrog_25	head closure Hc1	connector
UHGV-0172790_9	UniRef90	UniRef90_I2E8V6	Gp8	NA
UHGV-0172790_9	eggNOG-mapper	195103.CPF_1582	Phage head-tail adaptor	NA
UHGV-0172790_9	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0172790_9	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-0172790_9	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0172790_10	PHROG	phrog_40	head-tail adaptor Ad1	connector
UHGV-0172790_10	UniRef90	UniRef90_A0A2X2Y0S5	NA	NA
UHGV-0172790_10	eggNOG-mapper	394503.Ccel_2955	Phage gp6-like head-tail connector protein	NA
UHGV-0172790_10	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0172790_10	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-0172790_10	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0172790_11	PHROG	phrog_10	major head protein	head and packaging
UHGV-0172790_11	UniRef90	UniRef90_I2E8V4	Gp6	NA
UHGV-0172790_11	eggNOG-mapper	1262449.CP6013_1042	Phage major capsid protein, HK97 family	NA
UHGV-0172790_11	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0172790_11	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0172790_11	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0172790_11	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0172790_12	KOfam	K06904	NA	NA
UHGV-0172790_12	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-0172790_12	UniRef90	UniRef90_I2E8Y9	Gp5	NA
UHGV-0172790_12	eggNOG-mapper	1187894.I2E8Y9_9CAUD	peptidase activity	NA
UHGV-0172790_12	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0172790_12	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0172790_13	PHROG	phrog_12	portal protein	head and packaging
UHGV-0172790_13	UniRef90	UniRef90_I2E8V3	Gp4	NA
UHGV-0172790_13	eggNOG-mapper	1195236.CTER_5113	Phage portal protein, HK97 family	NA
UHGV-0172790_13	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0172790_13	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0172790_13	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0172790_13	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0172790_14	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0172790_14	UniRef90	UniRef90_I2E8V1	Gp2	NA
UHGV-0172790_14	eggNOG-mapper	1187894.I2E8V1_9CAUD	Phage Terminase	NA
UHGV-0172790_14	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0172790_14	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0172790_14	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-0172790_15	PHROG	phrog_83	terminase small subunit	head and packaging
UHGV-0172790_15	UniRef90	UniRef90_I2E8V0	Gp1	NA
UHGV-0172790_15	eggNOG-mapper	903814.ELI_3118	Phage terminase, small subunit	NA
UHGV-0172790_15	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0172790_15	NCBIFam	TIGR01558.1	phage terminase small subunit P27 family	NA
UHGV-0172790_15	COG	COG3747	Phage terminase, small subunit	NA
UHGV-0172790_15	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0172790_16	PHROG	phrog_144	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0172790_16	UniRef90	UniRef90_A0A2X3AD31	HNH endonuclease domain-containing protein	NA
UHGV-0172790_16	eggNOG-mapper	1195236.CTER_5117	HNH endonuclease	NA
UHGV-0172790_16	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0172790_18	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-0172790_18	PHROG	phrog_1	integrase	integration and excision
UHGV-0172790_18	UniRef90	UniRef90_A0A2X2Y9N3	Integrase/recombinase	NA
UHGV-0172790_18	eggNOG-mapper	1443122.Z958_p0023	Belongs to the 'phage' integrase family	NA
UHGV-0172790_18	Pfam	PF02899	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_1
UHGV-0172790_18	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0172790_18	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0172790_18	Structural annotation	PF00589, PF13495, MF_02055, NF040815, COG4974	NA	NA
UHGV-0172790_19	PHROG	phrog_2428	NA	unknown function
UHGV-0172790_19	UniRef90	UniRef90_UPI001ABA75AF	ABC transporter ATPase	NA
UHGV-0172790_19	eggNOG-mapper	272562.CA_C1899	NA	NA
UHGV-0172790_19	dbAPIS	APIS024	Tad1 proteins are not an enzymes, but are 'sponges' that bind and sequester the immune signaling molecule (cyclic ADP-ribose or gcADPR) produced by TIR-domain proteins, thus decoupling phage sensing from immune effector activation and rendering Thoeris inactive.	NA
UHGV-0172790_20	PHROG	phrog_31395	NA	unknown function
UHGV-0172790_23	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0172790_23	UniRef90	UniRef90_UPI001D0F667B	RinA family protein	NA
UHGV-0172790_23	eggNOG-mapper	1415775.U729_2595	sigma factor activity	NA
UHGV-0172790_23	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0172790_23	Structural annotation	PF05263, TIGR01636	NA	NA
UHGV-0172790_25	PHROG	phrog_98	NA	unknown function
UHGV-0172790_25	UniRef90	UniRef90_UPI001D11D1DA	YopX family protein	NA
UHGV-0172790_25	eggNOG-mapper	431943.CKL_3302	YopX protein	NA
UHGV-0172790_25	Pfam	PF09643	YopX protein	YopX
UHGV-0172790_25	NCBIFam	TIGR01671.1	phage conserved hypothetical protein TIGR01671	NA
UHGV-0172790_25	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-0172790_29	PHROG	phrog_7882	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0172790_29	UniRef90	UniRef90_UPI00096ACAD6	helix-turn-helix domain-containing protein	NA
UHGV-0172790_29	eggNOG-mapper	1128398.Curi_c22080	Helix-turn-helix domain	NA
UHGV-0172790_29	Pfam	PF13730	Helix-turn-helix domain	HTH_36
UHGV-0172790_29	COG	COG0640	DNA-binding transcriptional regulator, ArsR family	NA
UHGV-0172790_29	Structural annotation	PF07106, MF_01177, NF040642, COG0640	NA	NA
UHGV-0172790_31	PHROG	phrog_16446	NA	unknown function
UHGV-0172790_32	UniRef90	UniRef90_UPI0009D6878B	helix-turn-helix domain-containing protein	NA
UHGV-0172790_32	eggNOG-mapper	1196322.A370_05750	Helix-turn-helix domain	NA
UHGV-0172790_32	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-0172790_32	Structural annotation	PF12728, TIGR01764, COG3311	NA	NA
UHGV-0172790_33	UniRef90	UniRef90_UPI0018837974	ubiquitin	NA
UHGV-0172790_33	eggNOG-mapper	1391647.AVSV01000003_gene1781	NA	NA
UHGV-0172790_34	PHROG	phrog_1760	anti-termination protein	transcription regulation
UHGV-0172790_34	UniRef90	UniRef90_UPI001D10C35A	ORF6N domain-containing protein	NA
UHGV-0172790_34	eggNOG-mapper	1280689.AUJC01000003_gene927	ORF6N domain	NA
UHGV-0172790_34	Pfam	PF10543	ORF6N domain	ORF6N
UHGV-0172790_34	COG	COG3561	Phage anti-repressor protein Ant	NA
UHGV-0172790_34	Structural annotation	PF10543, TIGR02681, COG3646	NA	NA
UHGV-0172790_35	UniRef90	UniRef90_UPI001D10E2A2	helix-turn-helix domain-containing protein	NA
UHGV-0172790_35	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0172790_35	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0172790_36	KOfam	K18830	pezA; HTH-type transcriptional regulator / antitoxin PezA	NA
UHGV-0172790_36	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0172790_36	UniRef90	UniRef90_UPI0009D697F5	helix-turn-helix domain-containing protein	NA
UHGV-0172790_36	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0172790_36	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0172790_36	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0172790_36	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0172790_37	KOfam	K14059	int; integrase	NA
UHGV-0172790_37	PHROG	phrog_1	integrase	integration and excision
UHGV-0172790_37	UniRef90	UniRef90_B1BPM9	Prophage LambdaCh01, site-specific recombinase, phage integrase family	NA
UHGV-0172790_37	eggNOG-mapper	1211817.CCAT010000003_gene274	Belongs to the 'phage' integrase family	NA
UHGV-0172790_37	Pfam	PF14657	Arm DNA-binding domain	Arm-DNA-bind_4
UHGV-0172790_37	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0172790_37	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0172790_37	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0172790_37	Structural annotation	PF00589, PF14659, PF14657, MF_01808, TIGR02224, COG4974	NA	NA
UHGV-0172790_39	KOfam	K06936	raSEA; archaeosine synthase beta-subunit [EC:2.6.1.-]	NA
UHGV-0172790_39	UniRef90	UniRef90_Q8XIW2	Elp3 domain-containing protein	NA
UHGV-0172790_39	eggNOG-mapper	195103.CPF_2258	Elongator protein 3, MiaB family, Radical SAM	NA
UHGV-0172790_39	COG	COG1244	Archaeosine formation enzyme, radical SAM superfamily	NA
UHGV-0172790_39	Structural annotation	MF_03128, TIGR01210, COG1244	NA	NA