UHGV-0172815

Genome information

Genome length 20,092 bps

CDS count 26

Completeness 52.59% (medium-quality)

geNomad score 0.9828

Prediction confidence Confident

Genome information
Genome ID	UHGV-0172815
vOTU ID	vOTU-028630
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_588918
BioSample	SAMN09781735
Country	Madagascar
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	52.59% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	13
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9828
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	37.05
Jumbo phage	No

Genome content
Genome length	20,092 bps
GC content	32.80%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	26
CDS density	95.16%
Average CDS length	736.96 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0172815_1	PHROG	phrog_1220	head protein	head and packaging
UHGV-0172815_1	eggNOG-mapper	1033738.CAEP01000018_gene3685	NA	NA
UHGV-0172815_3	eggNOG-mapper	1304866.K413DRAFT_4770	PFAM Formylglycine-generating sulfatase enzyme	NA
UHGV-0172815_3	COG	COG1262	Formylglycine-generating enzyme, required for sulfatase activity, contains SUMF1/FGE domain	NA
UHGV-0172815_4	PHROG	phrog_538	minor tail protein	tail
UHGV-0172815_4	UniRef90	UniRef90_A0A843FNJ4	Siphovirus ReqiPepy6 Gp37-like family protein	NA
UHGV-0172815_4	eggNOG-mapper	411460.RUMTOR_01333	NA	NA
UHGV-0172815_4	Pfam	PF14594	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
UHGV-0172815_5	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0172815_5	UniRef90	UniRef90_A0A6N7STN1	Phage tail family protein	NA
UHGV-0172815_5	eggNOG-mapper	641112.ACOK01000108_gene1808	Phage tail protein	NA
UHGV-0172815_5	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-0172815_5	Structural annotation	PF20753, PF16774, TIGR01633, COG4722	NA	NA
UHGV-0172815_6	KOfam	K10421	CLIP1, RSN; CAP-Gly domain-containing linker protein 1	NA
UHGV-0172815_6	PHROG	phrog_58	tail length tape measure protein	tail
UHGV-0172815_6	eggNOG-mapper	1211814.CAPG01000097_gene4378	phage tail tape measure protein	NA
UHGV-0172815_6	COG	COG5412	Phage-related protein	NA
UHGV-0172815_6	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-0172815_8	PHROG	phrog_88	major tail protein	tail
UHGV-0172815_8	UniRef90	UniRef90_A0A843GGC8	S-l_SbsC_C domain-containing protein	NA
UHGV-0172815_8	eggNOG-mapper	1246626.BleG1_2876	phage major tail protein, phi13 family	NA
UHGV-0172815_8	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0172815_8	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-0172815_10	Structural annotation	PF05657	NA	NA
UHGV-0172815_11	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0172815_11	Structural annotation	TIGR01725	NA	NA
UHGV-0172815_12	UniRef90	UniRef90_A0A415G8B6	Head-tail adaptor protein	NA
UHGV-0172815_12	eggNOG-mapper	1536774.H70357_10645	NA	NA
UHGV-0172815_12	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0172815_13	UniRef90	UniRef90_A0A843GGX3	Phage head-tail connector protein	NA
UHGV-0172815_13	eggNOG-mapper	768704.Desmer_4461	NA	NA
UHGV-0172815_13	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0172815_13	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0172815_15	PHROG	phrog_10	major head protein	head and packaging
UHGV-0172815_15	UniRef90	UniRef90_A0A3E3DZT8	Phage major capsid protein	NA
UHGV-0172815_15	eggNOG-mapper	1536774.H70357_10630	Phage capsid family	NA
UHGV-0172815_15	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0172815_15	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0172815_15	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0172815_15	Structural annotation	PF05065, PF19962, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0172815_16	KOfam	K06904	NA	NA
UHGV-0172815_16	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-0172815_16	UniRef90	UniRef90_A0A0U1L0V7	Phage head maturation protease	NA
UHGV-0172815_16	eggNOG-mapper	1123288.SOV_2c03620	Caudovirus prohead serine protease	NA
UHGV-0172815_16	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0172815_16	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-0172815_16	COG	COG3740	Phage head maturation protease	NA
UHGV-0172815_16	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0172815_17	PHROG	phrog_12	portal protein	head and packaging
UHGV-0172815_17	UniRef90	UniRef90_UPI00156EE181	phage portal protein	NA
UHGV-0172815_17	eggNOG-mapper	457396.CSBG_01047	Portal protein	NA
UHGV-0172815_17	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0172815_17	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0172815_17	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0172815_18	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0172815_18	UniRef90	UniRef90_A0A843HV62	Terminase large subunit	NA
UHGV-0172815_18	eggNOG-mapper	642492.Clole_1855	Phage terminase-like protein large subunit	NA
UHGV-0172815_18	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0172815_18	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0172815_18	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0172815_18	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-0172815_19	PHROG	phrog_1066	NA	unknown function
UHGV-0172815_20	PHROG	phrog_4581	terminase small subunit	head and packaging
UHGV-0172815_20	UniRef90	UniRef90_UPI001D11694A	HNH endonuclease	NA
UHGV-0172815_20	eggNOG-mapper	1123288.SOV_2c03680	adenylate kinase activity	NA
UHGV-0172815_20	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0172815_20	Pfam	PF13671	AAA domain	AAA_33
UHGV-0172815_20	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0172815_20	Structural annotation	PF13671, MF_03171, NF005251, NF008448, COG4639	NA	NA
UHGV-0172815_22	PHROG	phrog_309	terminase small subunit	head and packaging
UHGV-0172815_22	UniRef90	UniRef90_A0A6B9SX71	Transposase/terminase small subunit	NA
UHGV-0172815_22	eggNOG-mapper	44251.PDUR_04490	transposase activity	NA
UHGV-0172815_22	COG	COG2963	Transposase InsE and inactivated derivatives	NA
UHGV-0172815_22	Structural annotation	PF07141	NA	NA
UHGV-0172815_23	KOfam	K11062	entD; probable enterotoxin D	NA
UHGV-0172815_23	PHROG	phrog_1794	amidase	lysis
UHGV-0172815_23	UniRef90	UniRef90_D4KJC0	Negative regulator of beta-lactamase expression	NA
UHGV-0172815_23	eggNOG-mapper	411463.EUBVEN_00418	Ami_2	NA
UHGV-0172815_23	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0172815_23	COG	COG5632	N-acetylmuramoyl-L-alanine amidase CwlA	NA
UHGV-0172815_23	Structural annotation	PF01510, PF14627, MF_04111, NF008758, COG5632	NA	NA
UHGV-0172815_24	PHROG	phrog_608	holin	lysis
UHGV-0172815_24	UniRef90	UniRef90_UPI001BAA7404	phage holin, LLH family	NA
UHGV-0172815_24	Pfam	PF09682	Bacteriophage holin of superfamily 6 (Holin_LLH)	Phage_holin_6_1
UHGV-0172815_24	Structural annotation	PF09682, TIGR01673	NA	NA
UHGV-0172815_25	PHROG	phrog_1863	NA	unknown function
UHGV-0172815_25	eggNOG-mapper	665956.HMPREF1032_02709	NA	NA
UHGV-0172815_26	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0172815_26	UniRef90	UniRef90_UPI000836D5C7	RNA polymerase subunit sigma-70	NA
UHGV-0172815_26	eggNOG-mapper	1321784.HMPREF1987_01063	NA	NA
UHGV-0172815_26	Structural annotation	PF02996	NA	NA