UHGV-0172891

Genome information

Genome length 43,388 bps

CDS count 58

Completeness 94.35% (high-quality)

geNomad score 0.9644

Prediction confidence Confident

Genome information
Genome ID	UHGV-0172891
vOTU ID	vOTU-063425
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_576174
BioSample	SAMN07449008
Country	India
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	94.35% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	25
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9644
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	66.04
Jumbo phage	No

Genome content
Genome length	43,388 bps
GC content	30.78%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	58
CDS density	94.57%
Average CDS length	709.55 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0172891_1	KOfam	K14059	int; integrase	NA
UHGV-0172891_1	PHROG	phrog_1	integrase	integration and excision
UHGV-0172891_1	UniRef90	UniRef90_UPI0019596A8B	site-specific integrase	NA
UHGV-0172891_1	eggNOG-mapper	1122217.KB899576_gene1907	Belongs to the 'phage' integrase family	NA
UHGV-0172891_1	Pfam	PF14657	Arm DNA-binding domain	Arm-DNA-bind_4
UHGV-0172891_1	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0172891_1	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0172891_1	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-0172891_2	eggNOG-mapper	1232428.CAVO010000063_gene314	NA	NA
UHGV-0172891_2	Structural annotation	PF16747	NA	NA
UHGV-0172891_3	UniRef90	UniRef90_UPI000E3F1DFA	NA	NA
UHGV-0172891_3	eggNOG-mapper	1122216.AUHW01000016_gene1025	NA	NA
UHGV-0172891_4	PHROG	phrog_7540	NA	unknown function
UHGV-0172891_4	eggNOG-mapper	887325.HMPREF0381_0348	NA	NA
UHGV-0172891_5	PHROG	phrog_6264	NA	unknown function
UHGV-0172891_5	eggNOG-mapper	596329.HMPREF0631_1368	NA	NA
UHGV-0172891_6	KOfam	K03496	parA, soj; chromosome partitioning protein	NA
UHGV-0172891_6	PHROG	phrog_164	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0172891_6	UniRef90	UniRef90_UPI001875BE06	AAA family ATPase	NA
UHGV-0172891_6	eggNOG-mapper	596329.HMPREF0631_1367	4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family	NA
UHGV-0172891_6	Pfam	PF13614	AAA domain	AAA_31
UHGV-0172891_6	COG	COG1192	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	NA
UHGV-0172891_6	Structural annotation	PF01656, MF_00355, NF041283, COG1192	NA	NA
UHGV-0172891_7	UniRef90	UniRef90_UPI001CD21BB6	GNAT family N-acetyltransferase	NA
UHGV-0172891_8	PHROG	phrog_87	metallo-protease	other
UHGV-0172891_8	UniRef90	UniRef90_A0A412CGX6	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-0172891_8	eggNOG-mapper	574375.BAGA_00350	IrrE N-terminal-like domain	NA
UHGV-0172891_8	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0172891_8	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0172891_8	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0172891_9	KOfam	K23779	sutR; XRE family transcriptional regulator, regulator of sulfur utilization	NA
UHGV-0172891_9	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0172891_9	UniRef90	UniRef90_A0A412CGP9	XRE family transcriptional regulator	NA
UHGV-0172891_9	eggNOG-mapper	1295642.H839_16148	transcriptional	NA
UHGV-0172891_9	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0172891_9	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0172891_9	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0172891_9	Structural annotation	PF01381, MF_00535, NF041951, COG1396	NA	NA
UHGV-0172891_10	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-0172891_10	PHROG	phrog_3	transcriptional repressor	transcription regulation
UHGV-0172891_10	UniRef90	UniRef90_A0A412CGD1	XRE family transcriptional regulator	NA
UHGV-0172891_10	eggNOG-mapper	1295642.H839_16148	transcriptional	NA
UHGV-0172891_10	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0172891_10	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0172891_10	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0172891_10	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0172891_16	UniRef90	UniRef90_H3K595	Excisionase family DNA binding domain-containing protein	NA
UHGV-0172891_18	PHROG	phrog_69	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0172891_18	UniRef90	UniRef90_UPI00195DF457	NA	NA
UHGV-0172891_18	eggNOG-mapper	445335.CBN_3007	NA	NA
UHGV-0172891_18	Pfam	PF10926	NA	DUF2800
UHGV-0172891_18	COG	COG2887	RecB family exonuclease	NA
UHGV-0172891_18	Structural annotation	PF10926, MF_03030, TIGR00372, COG2887	NA	NA
UHGV-0172891_19	PHROG	phrog_112	Gp2.5-like ssDNA binding protein and ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0172891_19	UniRef90	UniRef90_UPI001C39CB6B	NA	NA
UHGV-0172891_19	eggNOG-mapper	1540257.JQMW01000004_gene440	NA	NA
UHGV-0172891_19	Pfam	PF10991	Enterobacter phage Enc34, ssDNA-binding protein	Enc34_ssDNA-bd
UHGV-0172891_19	Structural annotation	PF10991, MF_04153	NA	NA
UHGV-0172891_20	KOfam	K02334	dpo; DNA polymerase bacteriophage-type [EC:2.7.7.7]	NA
UHGV-0172891_20	PHROG	phrog_17	DNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-0172891_20	UniRef90	UniRef90_H3K5A0	POLAc domain-containing protein	NA
UHGV-0172891_20	eggNOG-mapper	748727.CLJU_c36550	DNA polymerase	NA
UHGV-0172891_20	Pfam	PF00476	DNA polymerase family A	DNA_pol_A
UHGV-0172891_20	COG	COG0749	DNA polymerase I, 3'-5' exonuclease and polymerase domains	NA
UHGV-0172891_20	Structural annotation	PF00476, MF_04101, NF011540, COG0749	NA	NA
UHGV-0172891_22	PHROG	phrog_16315	NA	unknown function
UHGV-0172891_22	UniRef90	UniRef90_UPI001955FB87	PcfJ domain-containing protein	NA
UHGV-0172891_22	eggNOG-mapper	1262914.BN533_00797	PcfJ-like protein	NA
UHGV-0172891_22	Pfam	PF14284	PcfJ-like protein	PcfJ
UHGV-0172891_22	Structural annotation	PF14284	NA	NA
UHGV-0172891_23	PHROG	phrog_256	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0172891_23	UniRef90	UniRef90_UPI001C3B820C	Virulence-associated E family protein	NA
UHGV-0172891_23	eggNOG-mapper	332101.JIBU02000048_gene3721	virulence-associated E family protein	NA
UHGV-0172891_23	Pfam	PF05272	Virulence-associated protein E-like domain	VapE-like_dom
UHGV-0172891_23	COG	COG5545	Predicted P-loop ATPase and inactivated derivatives	NA
UHGV-0172891_23	Structural annotation	PF05272, MF_04000, NF005477, NF040562, COG5545	NA	NA
UHGV-0172891_24	PHROG	phrog_93	endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0172891_24	UniRef90	UniRef90_H3K5A4	VRR-NUC domain-containing protein	NA
UHGV-0172891_24	eggNOG-mapper	411473.RUMCAL_00899	VRR_NUC	NA
UHGV-0172891_24	Pfam	PF08774	VRR-NUC domain	VRR_NUC
UHGV-0172891_24	Structural annotation	PF01870, MF_00130, NF002584, COG1591	NA	NA
UHGV-0172891_25	KOfam	K14440	SMARCAL1, HARP; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 [EC:5.6.2.-]	NA
UHGV-0172891_25	PHROG	phrog_62	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0172891_25	UniRef90	UniRef90_H3K5A5	Helicase ATP-binding domain-containing protein	NA
UHGV-0172891_25	eggNOG-mapper	1408303.JNJJ01000049_gene2729	SNF2 family N-terminal domain	NA
UHGV-0172891_25	PADLOC	ZorD1_00007	SWI2/SNF2 helicase, Mrr-like nuclease	Zorya
UHGV-0172891_25	Pfam	PF00176	SNF2-related domain	SNF2-rel_dom
UHGV-0172891_25	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-0172891_25	COG	COG0553	Superfamily II DNA or RNA helicase, SNF2 family	NA
UHGV-0172891_25	Structural annotation	PF13872, PF16203, MF_01821, NF041790, COG0553	NA	NA
UHGV-0172891_28	KOfam	K07580	K07580; Zn-ribbon RNA-binding protein	NA
UHGV-0172891_29	PHROG	phrog_509	terminase small subunit	head and packaging
UHGV-0172891_29	UniRef90	UniRef90_UPI0015F333B0	phage terminase small subunit	NA
UHGV-0172891_29	eggNOG-mapper	1232428.CAVO010000021_gene808	DNA packaging	NA
UHGV-0172891_29	Pfam	PF13384	Homeodomain-like domain	HTH_23
UHGV-0172891_29	NCBIFam	NF040601.1	phage terminase small subunit	NA
UHGV-0172891_29	COG	COG5484	NA	NA
UHGV-0172891_29	Structural annotation	NF040601, COG5484	NA	NA
UHGV-0172891_30	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0172891_30	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0172891_30	UniRef90	UniRef90_A0A412CH41	PBSX family phage terminase large subunit	NA
UHGV-0172891_30	eggNOG-mapper	1123288.SOV_2c10550	Terminase-like family	NA
UHGV-0172891_30	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0172891_30	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0172891_30	COG	COG1783	Phage terminase large subunit	NA
UHGV-0172891_30	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0172891_31	KOfam	K09961	NA	NA
UHGV-0172891_31	PHROG	phrog_146	portal protein	head and packaging
UHGV-0172891_31	UniRef90	UniRef90_A0A412CGS4	NA	NA
UHGV-0172891_31	eggNOG-mapper	1123288.SOV_2c10560	NA	NA
UHGV-0172891_31	Pfam	PF06381	Anti-CBASS protein Acb1-like	Abc1-like
UHGV-0172891_31	NCBIFam	TIGR01555.1	phage-associated protein, HI1409 family	NA
UHGV-0172891_31	COG	COG3567	NA	NA
UHGV-0172891_31	Structural annotation	PF06381, MF_04135, TIGR01555, COG3567	NA	NA
UHGV-0172891_32	PHROG	phrog_324	head morphogenesis	head and packaging
UHGV-0172891_32	UniRef90	UniRef90_A0A412CGP2	Phage head morphogenesis protein	NA
UHGV-0172891_32	eggNOG-mapper	1415774.U728_3754	Phage Mu protein F like protein	NA
UHGV-0172891_32	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0172891_32	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-0172891_32	COG	COG2369	NA	NA
UHGV-0172891_32	Structural annotation	PF06152, TIGR01641, COG2369	NA	NA
UHGV-0172891_33	KOfam	K09960	NA	NA
UHGV-0172891_33	PHROG	phrog_16985	NA	unknown function
UHGV-0172891_33	UniRef90	UniRef90_A0A412CGF2	NA	NA
UHGV-0172891_33	eggNOG-mapper	1123288.SOV_2c10610	NA	NA
UHGV-0172891_33	Pfam	PF09979	NA	DUF2213
UHGV-0172891_33	COG	COG3566	NA	NA
UHGV-0172891_33	Structural annotation	PF09979, TIGR01543, COG3566	NA	NA
UHGV-0172891_34	PHROG	phrog_563	virion structural protein	head and packaging
UHGV-0172891_34	eggNOG-mapper	1415774.U728_3750	NA	NA
UHGV-0172891_34	Structural annotation	PF09956	NA	NA
UHGV-0172891_35	PHROG	phrog_264	major head protein	head and packaging
UHGV-0172891_35	UniRef90	UniRef90_A0A412CGX4	NA	NA
UHGV-0172891_35	eggNOG-mapper	1415774.U728_3749	NA	NA
UHGV-0172891_35	Pfam	PF09950	NA	DUF2184
UHGV-0172891_35	COG	COG4834	NA	NA
UHGV-0172891_35	Structural annotation	PF09950, MF_04113, TIGR01554, COG4834	NA	NA
UHGV-0172891_36	PHROG	phrog_29798	NA	unknown function
UHGV-0172891_37	PHROG	phrog_302	virion structural protein	head and packaging
UHGV-0172891_37	UniRef90	UniRef90_A0A412CH05	NA	NA
UHGV-0172891_37	eggNOG-mapper	1415774.U728_3747	NA	NA
UHGV-0172891_37	Pfam	PF13262	NA	DUF4054
UHGV-0172891_37	Structural annotation	PF13262	NA	NA
UHGV-0172891_38	PHROG	phrog_222	tail protein	tail
UHGV-0172891_38	eggNOG-mapper	1123288.SOV_2c10660	NA	NA
UHGV-0172891_39	PHROG	phrog_939	head protein	head and packaging
UHGV-0172891_39	eggNOG-mapper	1196322.A370_02027	NA	NA
UHGV-0172891_39	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-0172891_40	PHROG	phrog_1973	NA	unknown function
UHGV-0172891_40	eggNOG-mapper	1211817.CCAT010000003_gene228	NA	NA
UHGV-0172891_40	Structural annotation	PF16724	NA	NA
UHGV-0172891_41	PHROG	phrog_205	virion structural protein	head and packaging
UHGV-0172891_41	UniRef90	UniRef90_A0A412CH51	NA	NA
UHGV-0172891_41	eggNOG-mapper	1211817.CCAT010000003_gene227	NA	NA
UHGV-0172891_41	Pfam	PF11863	NA	DUF3383
UHGV-0172891_41	Structural annotation	PF11863, COG3497	NA	NA
UHGV-0172891_42	PHROG	phrog_280	virion structural protein	head and packaging
UHGV-0172891_42	UniRef90	UniRef90_A0A412CGT4	NA	NA
UHGV-0172891_42	eggNOG-mapper	1123288.SOV_2c10710	NA	NA
UHGV-0172891_42	Pfam	PF11681	Bacteriophage KPP10, Structural protein ORF10	KPP10_Orf10
UHGV-0172891_42	Structural annotation	PF11681, TIGR02241, COG5437	NA	NA
UHGV-0172891_43	eggNOG-mapper	1211817.CCAT010000003_gene225	NA	NA
UHGV-0172891_43	Pfam	PF21822	Phage tail assembly chaperone protein, TAC	Phage_TAC_15
UHGV-0172891_43	Structural annotation	PF21822	NA	NA
UHGV-0172891_44	PHROG	phrog_22539	NA	unknown function
UHGV-0172891_44	UniRef90	UniRef90_A0A412CGG1	Phage_lysozyme2 domain-containing protein	NA
UHGV-0172891_44	eggNOG-mapper	1123288.SOV_2c10740	NA	NA
UHGV-0172891_44	Pfam	PF18013	Phage tail lysozyme	Phage_lysozyme2
UHGV-0172891_44	Structural annotation	PF18013	NA	NA
UHGV-0172891_45	PHROG	phrog_817	tail fiber protein	tail
UHGV-0172891_45	UniRef90	UniRef90_A0A0U1KWI2	Putative bacteriophage protein	NA
UHGV-0172891_45	eggNOG-mapper	1123288.SOV_2c10750	NA	NA
UHGV-0172891_45	Pfam	PF21821	Dit-like phage tail protein	Dit_like
UHGV-0172891_46	PHROG	phrog_349	virion structural protein	head and packaging
UHGV-0172891_46	eggNOG-mapper	1332071.L581_4360	NA	NA
UHGV-0172891_47	PHROG	phrog_196	virion structural protein	head and packaging
UHGV-0172891_47	UniRef90	UniRef90_A0A0U1KW78	NA	NA
UHGV-0172891_47	eggNOG-mapper	1123288.SOV_2c10770	NA	NA
UHGV-0172891_48	UniRef90	UniRef90_A0A412CGU1	Gp138_N domain-containing protein	NA
UHGV-0172891_48	eggNOG-mapper	1123288.SOV_2c10780	Baseplate assembly protein	NA
UHGV-0172891_48	Pfam	PF18352	NA	Gp138_N
UHGV-0172891_48	Pfam	PF18946	GpV Apex motif	Apex
UHGV-0172891_48	COG	COG4540	Phage P2 baseplate assembly protein gpV	NA
UHGV-0172891_48	Structural annotation	PF18352, MF_01345_A, TIGR01644, COG4540	NA	NA
UHGV-0172891_49	PHROG	phrog_120	baseplate protein	tail
UHGV-0172891_49	UniRef90	UniRef90_A0A0U1KW63	Putative bacteriophage protein	NA
UHGV-0172891_49	eggNOG-mapper	1415774.U728_3734	NA	NA
UHGV-0172891_49	Structural annotation	PF04965, TIGR03357, COG3628	NA	NA
UHGV-0172891_50	PHROG	phrog_6	baseplate protein	tail
UHGV-0172891_50	UniRef90	UniRef90_UPI000E3EFBBE	baseplate J/gp47 family protein	NA
UHGV-0172891_50	eggNOG-mapper	1123288.SOV_2c10800	Baseplate J-like protein	NA
UHGV-0172891_50	Pfam	PF04865	Baseplate J-like protein	Baseplate_J
UHGV-0172891_50	COG	COG3299	NA	NA
UHGV-0172891_50	Structural annotation	PF03434, PF21379, PF21110, MF_04102, TIGR02243, COG3299	NA	NA
UHGV-0172891_51	PHROG	phrog_587	structural protein	head and packaging
UHGV-0172891_51	UniRef90	UniRef90_UPI000E3F3290	NA	NA
UHGV-0172891_51	eggNOG-mapper	1123288.SOV_2c10810	NA	NA
UHGV-0172891_51	Pfam	PF11041	NA	DUF2612
UHGV-0172891_52	PHROG	phrog_19253	NA	unknown function
UHGV-0172891_52	eggNOG-mapper	1123288.SOV_2c10820	Phage Tail Collar Domain	NA
UHGV-0172891_52	COG	COG4675	Phage tail collar domain	NA
UHGV-0172891_53	PHROG	phrog_18037	NA	unknown function
UHGV-0172891_53	Structural annotation	PF07041	NA	NA
UHGV-0172891_54	Structural annotation	PF13084	NA	NA
UHGV-0172891_55	PHROG	phrog_199	holin	lysis
UHGV-0172891_55	UniRef90	UniRef90_A0A1H8EGR7	Toxin secretion/phage lysis holin	NA
UHGV-0172891_55	eggNOG-mapper	1064535.MELS_1118	Bacteriophage holin family	NA
UHGV-0172891_55	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0172891_55	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0172891_55	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-0172891_55	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0172891_56	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0172891_56	PHROG	phrog_435	endolysin	lysis
UHGV-0172891_56	UniRef90	UniRef90_UPI00195A3C93	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0172891_56	eggNOG-mapper	1401067.HMPREF0872_07855	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0172891_56	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-0172891_56	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0172891_56	Structural annotation	PF01520, MF_00562, TIGR02883, COG0860	NA	NA
UHGV-0172891_57	PHROG	phrog_18996	NA	unknown function
UHGV-0172891_57	UniRef90	UniRef90_UPI001C3B7CE9	Prevent-host-death protein	NA
UHGV-0172891_57	eggNOG-mapper	864563.HMPREF9166_0106	NA	NA