UHGV-0172893

Genome information

Genome length 17,837 bps

CDS count 26

Completeness 99.29% (high-quality)

geNomad score 0.9786

Prediction confidence Confident

Genome information
Genome ID	UHGV-0172893
vOTU ID	vOTU-060980
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_576170
BioSample	SAMN07449058
Country	India
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.29% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	7
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9786
Virus hallmark genes (geNomad)	4
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	31.74
Jumbo phage	No

Genome content
Genome length	17,837 bps
GC content	49.48%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	26
CDS density	94.56%
Average CDS length	650.65 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0172893_5	KOfam	K07273	acm; lysozyme	NA
UHGV-0172893_5	PHROG	phrog_291	endolysin	lysis
UHGV-0172893_5	UniRef90	UniRef90_A0A261EXX6	Glycosyl hydrolase family 25	NA
UHGV-0172893_5	eggNOG-mapper	1437608.BBIA_2131	Glycosyl hydrolases family 25	NA
UHGV-0172893_5	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0172893_5	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-0172893_5	Structural annotation	PF01183, COG3757	NA	NA
UHGV-0172893_6	PHROG	phrog_199	holin	lysis
UHGV-0172893_6	UniRef90	UniRef90_A0A229VZS5	Holin	NA
UHGV-0172893_6	eggNOG-mapper	1437610.BREU_1264	Bacteriophage holin family	NA
UHGV-0172893_6	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0172893_6	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0172893_7	PHROG	phrog_2150	terminase	head and packaging
UHGV-0172893_7	UniRef90	UniRef90_UPI0010FDCA94	phage DNA encapsidation protein	NA
UHGV-0172893_7	eggNOG-mapper	338473.A6XAE1_9CAUD	Podovirus DNA encapsidation protein (Gp16)	NA
UHGV-0172893_7	Pfam	PF05894	Podovirus DNA encapsidation protein (Gp16)	Podovirus_Gp16
UHGV-0172893_7	Structural annotation	PF05894, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0172893_8	PHROG	phrog_8781	endolysin	lysis
UHGV-0172893_8	eggNOG-mapper	1235796.C815_01769	hydrolase, family 25	NA
UHGV-0172893_8	Pfam	PF05257	CHAP domain	CHAP
UHGV-0172893_8	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-0172893_8	Structural annotation	TIGR02219	NA	NA
UHGV-0172893_12	PHROG	phrog_3225	adaptor Ad4	connector
UHGV-0172893_12	UniRef90	UniRef90_A0A7S5RIY2	Lower collar connector protein	NA
UHGV-0172893_12	eggNOG-mapper	338473.A6XAD8_9CAUD	NA	NA
UHGV-0172893_13	PHROG	phrog_2038	upper collar connector	connector
UHGV-0172893_13	UniRef90	UniRef90_A0A7S5V0G4	Upper collar connector protein	NA
UHGV-0172893_13	eggNOG-mapper	10753.B7SSN1_BPNF	Phage Connector (GP10)	NA
UHGV-0172893_13	Pfam	PF05352	Phage Connector (GP10)	Phage_connector
UHGV-0172893_13	Structural annotation	PF05352, MF_04120, TIGR01537, COG4695	NA	NA
UHGV-0172893_14	PHROG	phrog_2248	tail protein	tail
UHGV-0172893_14	UniRef90	UniRef90_A0A6G5XZQ5	Caud_tail_N domain-containing protein	NA
UHGV-0172893_14	eggNOG-mapper	338473.A6XAD6_9CAUD	NA	NA
UHGV-0172893_14	Pfam	PF16838	Caudoviral major tail protein N-terminus	Caud_tail_N
UHGV-0172893_14	Pfam	PF20934	Bacillus phage phi29, Tail knob protein gp9, C-terminal domain	phi29_gp9_C
UHGV-0172893_14	Structural annotation	PF20934, PF16838	NA	NA
UHGV-0172893_15	PHROG	phrog_2006	major head protein	head and packaging
UHGV-0172893_15	UniRef90	UniRef90_A0A6G5YM92	BIG2 domain-containing protein	NA
UHGV-0172893_15	eggNOG-mapper	1161906.I6P8H2_9CAUD	T=13 icosahedral viral capsid	NA
UHGV-0172893_15	Pfam	PF02368	Bacterial Ig-like domain (group 2)	Big_2
UHGV-0172893_15	Structural annotation	PF02368, PF19821, PF18957, MF_04119, NF033394, COG1659, COG5492	NA	NA
UHGV-0172893_17	KOfam	K21237	gp2; Podoviridae DNA polymerase [EC:2.7.7.7]	NA
UHGV-0172893_17	PHROG	phrog_1907	DNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-0172893_17	UniRef90	UniRef90_A0A1L5L4Q6	DNA-directed DNA polymerase	NA
UHGV-0172893_17	eggNOG-mapper	10753.DPOL_BPNF	nucleotide binding	NA
UHGV-0172893_17	Pfam	PF03175	DNA polymerase type B, organellar and viral	DNA_pol_B_2
UHGV-0172893_17	Structural annotation	PF03175, MF_04055, NF004417, COG0417	NA	NA
UHGV-0172893_18	UniRef90	UniRef90_A0A1L5L4S0	Nodulation protein S (NodS) (Fragment)	NA
UHGV-0172893_19	PHROG	phrog_6243	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0172893_19	eggNOG-mapper	307240.Q5ILD0_9VIRU	Pfam:Phi29_Phage_SSB	NA
UHGV-0172893_19	Pfam	PF17427	Phage Single-stranded DNA-binding protein	Phi29_Phage_SSB
UHGV-0172893_19	Structural annotation	PF17427	NA	NA
UHGV-0172893_20	Structural annotation	PF17548, MF_00273	NA	NA