UHGV-0172945

Genome information

Genome length 35,977 bps

CDS count 54

Completeness 99.90% (high-quality)

geNomad score 0.9777

Prediction confidence Confident

Genome information
Genome ID	UHGV-0172945
vOTU ID	vOTU-074408
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_579867
BioSample	NA
Country	Madagascar
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	18
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9777
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	55.31
Jumbo phage	No

Genome content
Genome length	35,977 bps
GC content	42.70%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	54
CDS density	91.45%
Average CDS length	611.50 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0172945_2	PHROG	phrog_1066	NA	unknown function
UHGV-0172945_3	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0172945_3	UniRef90	UniRef90_R7FEF5	Terminase	NA
UHGV-0172945_3	eggNOG-mapper	1211817.CCAT010000007_gene1040	Terminase	NA
UHGV-0172945_3	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0172945_3	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0172945_3	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0172945_3	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-0172945_4	PHROG	phrog_12	portal protein	head and packaging
UHGV-0172945_4	UniRef90	UniRef90_R5VU10	Phage portal protein	NA
UHGV-0172945_4	eggNOG-mapper	1157490.EL26_20720	Phage portal protein	NA
UHGV-0172945_4	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0172945_4	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0172945_4	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0172945_5	KOfam	K06904	NA	NA
UHGV-0172945_5	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-0172945_5	UniRef90	UniRef90_R5W1K4	Putative phage prohead protease	NA
UHGV-0172945_5	eggNOG-mapper	927704.SELR_18200	Caudovirus prohead serine protease	NA
UHGV-0172945_5	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0172945_5	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-0172945_5	COG	COG3740	Phage head maturation protease	NA
UHGV-0172945_5	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0172945_6	PHROG	phrog_10	major head protein	head and packaging
UHGV-0172945_6	UniRef90	UniRef90_R5VT22	Phage major capsid protein HK97 family	NA
UHGV-0172945_6	eggNOG-mapper	411470.RUMGNA_02065	NA	NA
UHGV-0172945_6	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0172945_6	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0172945_6	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0172945_6	Structural annotation	PF05065, PF19962, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0172945_7	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0172945_8	UniRef90	UniRef90_R5WDX4	Putative phage head-tail adaptor	NA
UHGV-0172945_8	eggNOG-mapper	1536774.H70357_10645	NA	NA
UHGV-0172945_8	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0172945_8	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-0172945_8	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0172945_9	Structural annotation	TIGR01725	NA	NA
UHGV-0172945_10	Structural annotation	PF05657	NA	NA
UHGV-0172945_11	PHROG	phrog_88	major tail protein	tail
UHGV-0172945_11	UniRef90	UniRef90_A0A6B9SV22	Major tail protein	NA
UHGV-0172945_11	eggNOG-mapper	1246626.BleG1_2876	phage major tail protein, phi13 family	NA
UHGV-0172945_11	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0172945_11	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-0172945_13	KOfam	K16808	NUMA1; nuclear mitotic apparatus protein 1	NA
UHGV-0172945_13	PHROG	phrog_1272	tail length tape measure protein	tail
UHGV-0172945_13	UniRef90	UniRef90_UPI001EDCC813	phage tail tape measure protein	NA
UHGV-0172945_13	eggNOG-mapper	999413.HMPREF1094_02001	Phage-related minor tail protein	NA
UHGV-0172945_13	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0172945_13	COG	COG5280	Phage-related minor tail protein	NA
UHGV-0172945_13	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-0172945_14	UniRef90	UniRef90_A0A6N7STN1	Phage tail family protein	NA
UHGV-0172945_14	eggNOG-mapper	411473.RUMCAL_02824	NA	NA
UHGV-0172945_14	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-0172945_14	COG	COG4722	Phage-related protein YomH	NA
UHGV-0172945_16	Structural annotation	PF12571, MF_00791, NF003967, COG2967	NA	NA
UHGV-0172945_17	PHROG	phrog_36410	NA	unknown function
UHGV-0172945_17	UniRef90	UniRef90_UPI00166A22CC	phage tail family protein	NA
UHGV-0172945_17	eggNOG-mapper	755731.Clo1100_0556	Phage tail protein	NA
UHGV-0172945_17	COG	COG4722	Phage-related protein YomH	NA
UHGV-0172945_18	PHROG	phrog_538	minor tail protein	tail
UHGV-0172945_18	UniRef90	UniRef90_UPI0004813F81	siphovirus ReqiPepy6 Gp37-like family protein	NA
UHGV-0172945_18	eggNOG-mapper	411460.RUMTOR_01333	NA	NA
UHGV-0172945_18	Pfam	PF14594	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
UHGV-0172945_18	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0172945_19	PHROG	phrog_1220	head protein	head and packaging
UHGV-0172945_19	UniRef90	UniRef90_A0A0E0TFT0	Phage-related putative tail protein	NA
UHGV-0172945_19	eggNOG-mapper	755731.Clo1100_0558	COG NOG18825 non supervised orthologous group	NA
UHGV-0172945_19	Structural annotation	PF20747	NA	NA
UHGV-0172945_22	UniRef90	UniRef90_A0A1Q9J4Y8	HTH cro/C1-type domain-containing protein	NA
UHGV-0172945_22	eggNOG-mapper	1007096.BAGW01000035_gene1350	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0172945_22	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0172945_23	KOfam	K14059	int; integrase	NA
UHGV-0172945_23	PHROG	phrog_1	integrase	integration and excision
UHGV-0172945_23	UniRef90	UniRef90_A0A3R6QDD5	Site-specific integrase	NA
UHGV-0172945_23	eggNOG-mapper	1280698.AUJS01000007_gene999	Phage integrase family	NA
UHGV-0172945_23	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0172945_23	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0172945_23	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-0172945_24	KOfam	K18843	hicB; antitoxin HicB	NA
UHGV-0172945_24	PHROG	phrog_497	toxin-antitoxin system HicB-like	moron, auxiliary metabolic gene and host takeover
UHGV-0172945_24	UniRef90	UniRef90_A0A1Q6MG32	HicB family protein	NA
UHGV-0172945_24	eggNOG-mapper	397287.C807_02051	HicB_like antitoxin of bacterial toxin-antitoxin system	NA
UHGV-0172945_24	Pfam	PF15919	HicB_like antitoxin of bacterial toxin-antitoxin system	HicB_lk_antitox
UHGV-0172945_24	COG	COG1598	Antitoxin component HicB of the HicAB toxin-antitoxin system	NA
UHGV-0172945_24	Structural annotation	PF15919, COG1598	NA	NA
UHGV-0172945_25	KOfam	K07339	hicA; mRNA interferase HicA [EC:3.1.-.-]	NA
UHGV-0172945_25	PHROG	phrog_353	toxin	moron, auxiliary metabolic gene and host takeover
UHGV-0172945_25	UniRef90	UniRef90_A0A3R6X664	Addiction module toxin, HicA family	NA
UHGV-0172945_25	eggNOG-mapper	1408311.JNJM01000002_gene1308	HicA toxin of bacterial toxin-antitoxin,	NA
UHGV-0172945_25	Pfam	PF07927	HicA toxin of bacterial toxin-antitoxin,	HicA_toxin
UHGV-0172945_25	COG	COG1724	Predicted RNA binding protein YcfA, dsRBD-like fold, HicA-like mRNA interferase family	NA
UHGV-0172945_25	Structural annotation	PF07927, COG1724	NA	NA
UHGV-0172945_26	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-0172945_26	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0172945_26	UniRef90	UniRef90_A0A1Q6MG49	HTH cro/C1-type domain-containing protein	NA
UHGV-0172945_26	eggNOG-mapper	706434.HMPREF9429_00405	Peptidase S24-like	NA
UHGV-0172945_26	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-0172945_26	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0172945_26	Structural annotation	PF01381, PF00717, MF_00015, NF041951, COG1396	NA	NA
UHGV-0172945_27	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-0172945_27	PHROG	phrog_5823	transcriptional regulator	transcription regulation
UHGV-0172945_27	UniRef90	UniRef90_A0A822LL88	Toxin-antitoxin system antitoxin component Xre family	NA
UHGV-0172945_27	eggNOG-mapper	1123263.AUKY01000072_gene2113	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0172945_27	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0172945_27	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0172945_29	PHROG	phrog_750	NA	unknown function
UHGV-0172945_29	eggNOG-mapper	97139.C824_00051	NA	NA
UHGV-0172945_29	Structural annotation	PF13835, NF040858	NA	NA
UHGV-0172945_31	UniRef90	UniRef90_R5VU56	HTH_11 domain-containing protein	NA
UHGV-0172945_31	Structural annotation	PF20063	NA	NA
UHGV-0172945_35	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0172945_35	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0172945_35	UniRef90	UniRef90_R5JVR8	Single-stranded DNA-binding protein	NA
UHGV-0172945_35	eggNOG-mapper	411489.CLOL250_00507	Single-stranded DNA-binding protein	NA
UHGV-0172945_35	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0172945_35	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0172945_35	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0172945_35	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0172945_35	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-0172945_36	PHROG	phrog_190	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0172945_36	UniRef90	UniRef90_A0A3R6WN18	NA	NA
UHGV-0172945_36	eggNOG-mapper	1236514.BAKL01000051_gene3708	NA	NA
UHGV-0172945_36	Pfam	PF06356	NA	DUF1064
UHGV-0172945_37	PHROG	phrog_5708	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0172945_37	UniRef90	UniRef90_A0A174X4J3	Phage replication initiation protein	NA
UHGV-0172945_37	eggNOG-mapper	1139219.I569_00860	DnaD domain protein	NA
UHGV-0172945_37	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0172945_37	Structural annotation	PF09681, TIGR01714	NA	NA
UHGV-0172945_38	PHROG	phrog_2245	nucleoside triphosphate pyrophosphohydrolase	other
UHGV-0172945_38	UniRef90	UniRef90_A0A415TAK8	NA	NA
UHGV-0172945_38	eggNOG-mapper	658655.HMPREF0988_00885	NA	NA
UHGV-0172945_38	Structural annotation	PF02185	NA	NA
UHGV-0172945_39	KOfam	K03427	hsdM; type I restriction enzyme M protein [EC:2.1.1.72]	NA
UHGV-0172945_39	PHROG	phrog_5696	NA	unknown function
UHGV-0172945_39	UniRef90	UniRef90_A0A3D5TAK3	Restriction endonuclease subunit M	NA
UHGV-0172945_39	eggNOG-mapper	1118057.CAGX01000058_gene108	site-specific DNA-methyltransferase (adenine-specific) activity	NA
UHGV-0172945_39	PADLOC	MTase_I_00005	Type I methyltransferase	RM
UHGV-0172945_39	Pfam	PF02384	N-6 DNA Methylase	N6_Mtase
UHGV-0172945_39	COG	COG0286	Type I restriction-modification system, DNA methylase subunit	NA
UHGV-0172945_39	Structural annotation	COG0286	NA	NA
UHGV-0172945_40	KOfam	K14059	int; integrase	NA
UHGV-0172945_40	PHROG	phrog_1	integrase	integration and excision
UHGV-0172945_40	UniRef90	UniRef90_A0A0M6WVP0	Tyr recombinase domain-containing protein	NA
UHGV-0172945_40	eggNOG-mapper	1384065.JAGS01000001_gene3081	Belongs to the 'phage' integrase family	NA
UHGV-0172945_40	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0172945_40	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0172945_40	Structural annotation	PF00589, PF14659, MF_02055, NF001399, COG4974	NA	NA
UHGV-0172945_43	eggNOG-mapper	411461.DORFOR_01156	NA	NA
UHGV-0172945_44	PHROG	phrog_9804	NA	unknown function
UHGV-0172945_44	UniRef90	UniRef90_A0A174S716	Inhibitor_G39P domain-containing protein	NA
UHGV-0172945_44	eggNOG-mapper	742740.HMPREF9474_03118	Loader and inhibitor of phage G40P	NA
UHGV-0172945_44	AcrCatalog	cluster_137185	NA	NA
UHGV-0172945_44	Pfam	PF11417	Loader and inhibitor of phage G40P	Inhibitor_G39P
UHGV-0172945_44	Structural annotation	PF11417	NA	NA
UHGV-0172945_45	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0172945_45	UniRef90	UniRef90_A0A2H4JC51	Putative 3'-phosphoadenosine 5'-phosphosulfatesulfotransferase/FAD synthetase-related enzyme	NA
UHGV-0172945_45	eggNOG-mapper	411461.DORFOR_01142	NA	NA
UHGV-0172945_45	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0172945_45	Structural annotation	PF01507, MF_00064, TIGR00434, COG0175	NA	NA
UHGV-0172945_46	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0172945_46	PHROG	phrog_116	DNA methyltransferase	other
UHGV-0172945_46	UniRef90	UniRef90_A0A3R6PIU8	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0172945_46	eggNOG-mapper	1235800.C819_02255	C-5 cytosine-specific DNA methylase	NA
UHGV-0172945_46	PADLOC	MTase_II_00020	Type II methyltransferase	RM
UHGV-0172945_46	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0172945_46	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0172945_46	Structural annotation	PF00145, MF_00351, TIGR00675, COG0270	NA	NA
UHGV-0172945_47	PHROG	phrog_8684	NA	unknown function
UHGV-0172945_47	UniRef90	UniRef90_A0A416ZXS5	YopX domain-containing protein	NA
UHGV-0172945_47	eggNOG-mapper	742735.HMPREF9467_00920	YopX protein	NA
UHGV-0172945_47	Pfam	PF09643	YopX protein	YopX
UHGV-0172945_47	NCBIFam	TIGR01671.1	phage conserved hypothetical protein TIGR01671	NA
UHGV-0172945_47	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-0172945_48	PHROG	phrog_874	NA	unknown function
UHGV-0172945_48	UniRef90	UniRef90_A0A6N7W7Q7	ASCH domain-containing protein	NA
UHGV-0172945_48	eggNOG-mapper	411468.CLOSCI_00298	NA	NA
UHGV-0172945_48	Structural annotation	PF04266, MF_00684, NF003443, COG3097	NA	NA
UHGV-0172945_49	Structural annotation	PF06530, TIGR02937, COG2739	NA	NA
UHGV-0172945_50	PHROG	phrog_1129	holin	lysis
UHGV-0172945_50	UniRef90	UniRef90_UPI000485FFFD	phage holin family protein	NA
UHGV-0172945_50	eggNOG-mapper	537013.CLOSTMETH_01754	Phage holin family Hol44, in holin superfamily V	NA
UHGV-0172945_50	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-0172945_50	Structural annotation	PF16079	NA	NA
UHGV-0172945_51	PHROG	phrog_1863	NA	unknown function
UHGV-0172945_51	eggNOG-mapper	1203606.HMPREF1526_02027	NA	NA
UHGV-0172945_52	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0172945_52	PHROG	phrog_15001	endolysin	lysis
UHGV-0172945_52	UniRef90	UniRef90_R5WDY6	N-acetylmuramyl-L-alanine amidase negative regulator of AmpC AmpD	NA
UHGV-0172945_52	eggNOG-mapper	1235835.C814_01292	Ami_2	NA
UHGV-0172945_52	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0172945_52	COG	COG1388	LysM repeat	NA
UHGV-0172945_52	Structural annotation	PF01510, PF18342, MF_04111, COG5632	NA	NA
UHGV-0172945_53	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0172945_53	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-0172945_53	UniRef90	UniRef90_UPI001D08E9BA	terminase small subunit	NA
UHGV-0172945_53	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0172945_53	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0172945_53	Structural annotation	PF03592, COG3728	NA	NA
UHGV-0172945_54	PHROG	phrog_4581	terminase small subunit	head and packaging
UHGV-0172945_54	UniRef90	UniRef90_R5W1L1	HNH domain-containing protein	NA
UHGV-0172945_54	eggNOG-mapper	1123288.SOV_2c03680	adenylate kinase activity	NA
UHGV-0172945_54	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0172945_54	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0172945_54	Structural annotation	PF13671, MF_03171, NF005251, NF008448, COG4639	NA	NA