UHGV-0172984

Genome information

Genome length 33,375 bps

CDS count 52

Completeness 95.63% (high-quality)

geNomad score 0.9561

Prediction confidence Confident

Genome information
Genome ID	UHGV-0172984
vOTU ID	vOTU-081662
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_578842
BioSample	NA
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	95.63% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	18
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9561
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	60.34
Jumbo phage	No

Genome content
Genome length	33,375 bps
GC content	30.67%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	52
CDS density	91.99%
Average CDS length	594.69 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0172984_1	PHROG	phrog_14030	NA	unknown function
UHGV-0172984_1	eggNOG-mapper	33035.JPJF01000093_gene2240	NlpC/P60 family	NA
UHGV-0172984_1	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-0172984_2	PHROG	phrog_13712	holin	lysis
UHGV-0172984_2	UniRef90	UniRef90_F0H1M6	Conserved domain protein	NA
UHGV-0172984_2	eggNOG-mapper	525255.HMPREF0077_1005	NA	NA
UHGV-0172984_3	eggNOG-mapper	561177.ANHYDRO_01424	NA	NA
UHGV-0172984_4	UniRef90	UniRef90_A0A6N2T300	PLD phosphodiesterase domain-containing protein	NA
UHGV-0172984_5	PHROG	phrog_372	tail protein	tail
UHGV-0172984_5	UniRef90	UniRef90_F0H1M9	Conserved domain protein	NA
UHGV-0172984_5	eggNOG-mapper	1121105.ATXL01000027_gene757	NA	NA
UHGV-0172984_5	Pfam	PF05895	NA	DUF859
UHGV-0172984_5	Structural annotation	PF05895, MF_04116, NF010681, COG3291	NA	NA
UHGV-0172984_6	KOfam	K23989	lytD, lytB; mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase [EC:3.2.1.96]	NA
UHGV-0172984_6	PHROG	phrog_588	tail fiber protein and host specificity	tail
UHGV-0172984_6	UniRef90	UniRef90_UPI000315AC76	glucosaminidase domain-containing protein	NA
UHGV-0172984_6	eggNOG-mapper	1336234.JAGN01000004_gene515	Prophage endopeptidase tail	NA
UHGV-0172984_6	Pfam	PF05382	Bacteriophage peptidoglycan hydrolase	Amidase_5
UHGV-0172984_6	Pfam	PF01832	Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase	Glucosaminidase
UHGV-0172984_6	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0172984_6	COG	COG4926	Phage-related protein	NA
UHGV-0172984_6	Structural annotation	PF14594, PF19081, MF_04116, TIGR01665, COG4926	NA	NA
UHGV-0172984_7	PHROG	phrog_202	distal tail protein Dit	tail
UHGV-0172984_7	UniRef90	UniRef90_UPI0002F4F69F	phage tail family protein	NA
UHGV-0172984_7	eggNOG-mapper	866775.HMPREF9243_0214	CW_7 repeat	NA
UHGV-0172984_7	NCBIFam	TIGR01633.1	distal tail protein Dit	NA
UHGV-0172984_7	COG	COG1388	LysM repeat	NA
UHGV-0172984_7	Structural annotation	PF05709, PF18342, TIGR01633, NF040670, COG4722, COG4991	NA	NA
UHGV-0172984_8	PHROG	phrog_58	tail length tape measure protein	tail
UHGV-0172984_8	UniRef90	UniRef90_UPI001594D082	phage tail protein	NA
UHGV-0172984_8	eggNOG-mapper	1321820.HMPREF1983_00924	Phage tail tape measure protein	NA
UHGV-0172984_8	COG	COG1511	NA	NA
UHGV-0172984_9	PHROG	phrog_1633	NA	unknown function
UHGV-0172984_9	UniRef90	UniRef90_UPI0002E88A9F	NA	NA
UHGV-0172984_9	eggNOG-mapper	875454.BAEW01000017_gene1588	NA	NA
UHGV-0172984_9	Pfam	PF17318	NA	DUF5361
UHGV-0172984_9	Structural annotation	PF17318	NA	NA
UHGV-0172984_10	PHROG	phrog_1526	NA	unknown function
UHGV-0172984_10	UniRef90	UniRef90_D2BQF7	NA	NA
UHGV-0172984_10	eggNOG-mapper	1231377.C426_1729	NA	NA
UHGV-0172984_11	PHROG	phrog_117	major tail protein	tail
UHGV-0172984_11	UniRef90	UniRef90_UPI001593E789	phage tail protein	NA
UHGV-0172984_11	eggNOG-mapper	879308.HMPREF9130_1239	domain, Protein	NA
UHGV-0172984_11	COG	COG5492	NA	NA
UHGV-0172984_11	Structural annotation	PF04630, TIGR01603, COG5437	NA	NA
UHGV-0172984_12	eggNOG-mapper	875454.BAEW01000017_gene1591	NA	NA
UHGV-0172984_12	Structural annotation	PF06141	NA	NA
UHGV-0172984_13	PHROG	phrog_387	neck protein	connector
UHGV-0172984_13	eggNOG-mapper	879308.HMPREF9130_1237	NA	NA
UHGV-0172984_14	PHROG	phrog_501	head closure Hc1	connector
UHGV-0172984_14	UniRef90	UniRef90_A0A139QHM6	Phage-associated protein	NA
UHGV-0172984_14	eggNOG-mapper	525255.HMPREF0077_0989	NA	NA
UHGV-0172984_14	Structural annotation	PF12206, COG5614	NA	NA
UHGV-0172984_15	PHROG	phrog_137	head-tail adaptor Ad1	connector
UHGV-0172984_15	UniRef90	UniRef90_UPI00031C35D9	phage Gp19/Gp15/Gp42 family protein	NA
UHGV-0172984_15	eggNOG-mapper	525255.HMPREF0077_0988	Phage protein Gp19/Gp15/Gp42	NA
UHGV-0172984_15	Pfam	PF09355	NA	Phage_Gp19
UHGV-0172984_15	Structural annotation	PF09355	NA	NA
UHGV-0172984_16	PHROG	phrog_1539	Arc-like repressor	transcription regulation
UHGV-0172984_16	UniRef90	UniRef90_A0A352NC25	Endonuc-dimeris domain-containing protein	NA
UHGV-0172984_16	eggNOG-mapper	875454.BAEW01000017_gene1595	NA	NA
UHGV-0172984_16	Pfam	PF09124	T4 recombination endonuclease VII, dimerisation	Endonuc-dimeris
UHGV-0172984_16	Structural annotation	PF09124	NA	NA
UHGV-0172984_17	PHROG	phrog_32396	NA	unknown function
UHGV-0172984_17	UniRef90	UniRef90_A0A352NC29	Phage major capsid protein	NA
UHGV-0172984_17	eggNOG-mapper	525255.HMPREF0077_0986	Phage capsid family	NA
UHGV-0172984_17	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0172984_17	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0172984_18	PHROG	phrog_233	head scaffolding protein	head and packaging
UHGV-0172984_18	UniRef90	UniRef90_UPI0003200226	NA	NA
UHGV-0172984_18	eggNOG-mapper	525255.HMPREF0077_0985	NA	NA
UHGV-0172984_18	Pfam	PF14265	NA	DUF4355
UHGV-0172984_18	Structural annotation	PF14265	NA	NA
UHGV-0172984_19	PHROG	phrog_17688	NA	unknown function
UHGV-0172984_19	UniRef90	UniRef90_A0A2N6UIE4	Terminase	NA
UHGV-0172984_19	eggNOG-mapper	938288.HG326226_gene860	phage terminase, large subunit	NA
UHGV-0172984_19	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0172984_19	Structural annotation	PF20441, PF03354, MF_04146, NF033889, COG4626	NA	NA
UHGV-0172984_21	PHROG	phrog_2494	minor head protein	head and packaging
UHGV-0172984_21	UniRef90	UniRef90_A0A133KD90	ADPrib_exo_Tox domain-containing protein	NA
UHGV-0172984_21	eggNOG-mapper	525255.HMPREF0077_0983	NA	NA
UHGV-0172984_22	PHROG	phrog_104	portal protein	head and packaging
UHGV-0172984_22	UniRef90	UniRef90_UPI000374A09C	phage portal protein	NA
UHGV-0172984_22	eggNOG-mapper	938288.HG326226_gene854	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0172984_22	Structural annotation	PF05133, MF_04120, TIGR01538, COG3567	NA	NA
UHGV-0172984_23	PHROG	phrog_1035	endonuclease VII	DNA, RNA and nucleotide metabolism
UHGV-0172984_23	UniRef90	UniRef90_A0A0Z8G5M9	Phage terminase	NA
UHGV-0172984_23	eggNOG-mapper	1151122.AQYD01000007_gene736	HNH endonuclease	NA
UHGV-0172984_23	Pfam	PF14279	HNH endonuclease	HNH_5
UHGV-0172984_23	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0172984_23	Structural annotation	PF01844, COG1403	NA	NA
UHGV-0172984_24	PHROG	phrog_338	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0172984_24	UniRef90	UniRef90_F0H1P7	HNH endonuclease domain protein	NA
UHGV-0172984_24	eggNOG-mapper	525255.HMPREF0077_0981	HNH endonuclease	NA
UHGV-0172984_24	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0172984_24	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0172984_24	Structural annotation	PF01844, COG1403	NA	NA
UHGV-0172984_25	eggNOG-mapper	525255.HMPREF0077_0980	NA	NA
UHGV-0172984_25	Structural annotation	TIGR01636	NA	NA
UHGV-0172984_26	KOfam	K01520	dut, DUT; dUTP pyrophosphatase [EC:3.6.1.23]	NA
UHGV-0172984_26	PHROG	phrog_135	dUTPase	DNA, RNA and nucleotide metabolism
UHGV-0172984_26	UniRef90	UniRef90_UPI0002D5EF75	dUTP diphosphatase	NA
UHGV-0172984_26	eggNOG-mapper	561177.ANHYDRO_01398	dUTPase	NA
UHGV-0172984_26	Pfam	PF00692	dUTPase	dUTPase
UHGV-0172984_26	NCBIFam	TIGR00576.1	dUTP diphosphatase	NA
UHGV-0172984_26	COG	COG0756	dUTP pyrophosphatase (dUTPase)	NA
UHGV-0172984_26	Structural annotation	PF00692, MF_00116, TIGR00576, COG0756	NA	NA
UHGV-0172984_28	KOfam	K03700	recU; recombination protein U	NA
UHGV-0172984_28	PHROG	phrog_843	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0172984_28	UniRef90	UniRef90_A0A1E8RGJ7	Holliday junction resolvase RecU	NA
UHGV-0172984_28	eggNOG-mapper	525255.HMPREF0077_0974	Endonuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves mobile four-strand junctions by introducing symmetrical nicks in paired strands. Promotes annealing of linear ssDNA with homologous dsDNA. Required for DNA repair, homologous recombination and chromosome segregation	NA
UHGV-0172984_28	Pfam	PF03838	Recombination protein U	RecU
UHGV-0172984_28	COG	COG3331	Penicillin-binding protein-related factor A, putative recombinase	NA
UHGV-0172984_28	Structural annotation	PF03838, MF_00130, NF002581, COG3331	NA	NA
UHGV-0172984_29	PHROG	phrog_3784	NA	unknown function
UHGV-0172984_29	eggNOG-mapper	1033733.CAEK01000007_gene1669	NA	NA
UHGV-0172984_30	UniRef90	UniRef90_F0H1Q2	Conserved domain protein	NA
UHGV-0172984_30	eggNOG-mapper	1033733.CAEK01000007_gene1670	NA	NA
UHGV-0172984_30	Structural annotation	PF07453	NA	NA
UHGV-0172984_31	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0172984_31	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0172984_31	UniRef90	UniRef90_A0A1E8RGP1	Single-stranded DNA-binding protein	NA
UHGV-0172984_31	eggNOG-mapper	561177.ANHYDRO_01394	Single-stranded DNA-binding protein	NA
UHGV-0172984_31	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0172984_31	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0172984_31	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0172984_31	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0172984_31	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-0172984_35	eggNOG-mapper	561177.ANHYDRO_01390	NA	NA
UHGV-0172984_36	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0172984_36	eggNOG-mapper	561177.ANHYDRO_01389	NA	NA
UHGV-0172984_36	Structural annotation	PF21578	NA	NA
UHGV-0172984_38	eggNOG-mapper	525919.Apre_0807	NA	NA
UHGV-0172984_39	eggNOG-mapper	561177.ANHYDRO_01386	NA	NA
UHGV-0172984_40	PHROG	phrog_7735	excisionase	integration and excision
UHGV-0172984_40	Structural annotation	PF21531, NF033787, COG3311	NA	NA
UHGV-0172984_41	UniRef90	UniRef90_UPI00162A814F	helix-turn-helix transcriptional regulator	NA
UHGV-0172984_41	eggNOG-mapper	525255.HMPREF0077_0948	NA	NA
UHGV-0172984_42	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-0172984_42	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0172984_42	UniRef90	UniRef90_UPI00031ED3C6	helix-turn-helix transcriptional regulator	NA
UHGV-0172984_42	eggNOG-mapper	1033733.CAEK01000007_gene1685	Helix-turn-helix XRE-family like proteins	NA
UHGV-0172984_42	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0172984_42	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0172984_42	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0172984_42	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0172984_47	PHROG	phrog_1305	DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0172984_47	UniRef90	UniRef90_UPI0015930F9C	NA	NA
UHGV-0172984_47	eggNOG-mapper	525255.HMPREF0077_0960	NA	NA
UHGV-0172984_47	Structural annotation	COG2250	NA	NA
UHGV-0172984_49	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-0172984_49	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0172984_49	UniRef90	UniRef90_UPI0002ECD8A0	LexA family transcriptional regulator	NA
UHGV-0172984_49	eggNOG-mapper	1033733.CAEK01000007_gene1691	Peptidase S24-like	NA
UHGV-0172984_49	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0172984_49	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-0172984_49	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0172984_49	Structural annotation	PF01381, PF00717, MF_00015, NF041951, COG1396	NA	NA
UHGV-0172984_50	eggNOG-mapper	568816.Acin_1263	NA	NA
UHGV-0172984_50	Structural annotation	PF16538	NA	NA
UHGV-0172984_51	PHROG	phrog_2158	abortive infection resistance protein	moron, auxiliary metabolic gene and host takeover
UHGV-0172984_51	UniRef90	UniRef90_UPI00092FED43	Abi family protein	NA
UHGV-0172984_51	eggNOG-mapper	1121947.AUHK01000002_gene900	Abi-like protein	NA
UHGV-0172984_51	PADLOC	AbiD	AbiD	Abi
UHGV-0172984_51	Pfam	PF07751	Abi-like protein	Abi_2
UHGV-0172984_51	COG	COG4823	Abortive infection bacteriophage resistance protein	NA
UHGV-0172984_51	Structural annotation	PF07751, COG4823	NA	NA
UHGV-0172984_52	KOfam	K14059	int; integrase	NA
UHGV-0172984_52	PHROG	phrog_1	integrase	integration and excision
UHGV-0172984_52	UniRef90	UniRef90_A0A6N2T044	Transposase from transposon Tn916	NA
UHGV-0172984_52	eggNOG-mapper	1262449.CP6013_3165	Belongs to the 'phage' integrase family	NA
UHGV-0172984_52	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0172984_52	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0172984_52	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA