UHGV-0173113

Genome information

Genome length 23,841 bps

CDS count 33

Completeness 52.29% (medium-quality)

geNomad score 0.9737

Prediction confidence Confident

Genome information
Genome ID	UHGV-0173113
vOTU ID	vOTU-028649
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_590462
BioSample	NA
Country	Madagascar
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	52.29% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	13
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9737
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	37.37
Jumbo phage	No

Genome content
Genome length	23,841 bps
GC content	36.01%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	33
CDS density	91.72%
Average CDS length	663.91 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0173113_2	Structural annotation	PF11195	NA	NA
UHGV-0173113_3	KOfam	K03427	hsdM; type I restriction enzyme M protein [EC:2.1.1.72]	NA
UHGV-0173113_3	PHROG	phrog_1071	DNA methyltransferase	other
UHGV-0173113_3	UniRef90	UniRef90_UPI0018C20B47	N-6 DNA methylase	NA
UHGV-0173113_3	eggNOG-mapper	73422.L0P368_9CAUD	DNA methylation	NA
UHGV-0173113_3	Pfam	PF02384	N-6 DNA Methylase	N6_Mtase
UHGV-0173113_6	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0173113_6	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0173113_6	UniRef90	UniRef90_UPI001D019219	PBSX family phage terminase large subunit	NA
UHGV-0173113_6	eggNOG-mapper	411461.DORFOR_01162	Phage terminase, large subunit, PBSX family	NA
UHGV-0173113_6	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0173113_6	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0173113_6	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0173113_6	COG	COG1783	Phage terminase large subunit	NA
UHGV-0173113_6	Structural annotation	PF04466, PF17288, PF03592, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0173113_7	PHROG	phrog_533	portal protein	head and packaging
UHGV-0173113_7	UniRef90	UniRef90_L1Q859	Putative phage minor capsid protein	NA
UHGV-0173113_7	eggNOG-mapper	545697.HMPREF0216_02845	NA	NA
UHGV-0173113_7	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0173113_8	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0173113_8	UniRef90	UniRef90_UPI0005428234	phage minor capsid protein	NA
UHGV-0173113_8	eggNOG-mapper	545697.HMPREF0216_02846	Phage minor capsid protein 2	NA
UHGV-0173113_8	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0173113_8	COG	COG2369	NA	NA
UHGV-0173113_8	Structural annotation	PF06152	NA	NA
UHGV-0173113_9	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0173113_9	UniRef90	UniRef90_UPI000360E95E	phage scaffolding protein	NA
UHGV-0173113_9	eggNOG-mapper	536233.CLO_0885	Phage minor structural protein GP20	NA
UHGV-0173113_9	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0173113_9	Structural annotation	PF06810	NA	NA
UHGV-0173113_10	PHROG	phrog_247	major head protein	head and packaging
UHGV-0173113_10	UniRef90	UniRef90_A0A7X8EUB4	Phage coat protein	NA
UHGV-0173113_10	eggNOG-mapper	1121344.JHZO01000003_gene972	NA	NA
UHGV-0173113_10	Pfam	PF20036	Major capsid protein 13-like	Gp13-like
UHGV-0173113_10	COG	COG1106	ATPase/GTPase, AAA15 family	NA
UHGV-0173113_10	Structural annotation	PF20036, MF_04113, TIGR04387, COG4653	NA	NA
UHGV-0173113_11	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0173113_11	eggNOG-mapper	642492.Clole_0822	NA	NA
UHGV-0173113_12	PHROG	phrog_3366	NA	unknown function
UHGV-0173113_12	eggNOG-mapper	545697.HMPREF0216_02852	NA	NA
UHGV-0173113_12	Pfam	PF20536	NA	DUF6751
UHGV-0173113_12	Structural annotation	PF20536	NA	NA
UHGV-0173113_13	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0173113_13	UniRef90	UniRef90_UPI0005439C25	minor capsid protein	NA
UHGV-0173113_13	eggNOG-mapper	1151292.QEW_4532	Minor capsid protein	NA
UHGV-0173113_13	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0173113_13	Structural annotation	PF11114	NA	NA
UHGV-0173113_14	PHROG	phrog_3266	tail completion	connector
UHGV-0173113_14	UniRef90	UniRef90_UPI000D830B30	chloramphenicol resistance protein	NA
UHGV-0173113_14	eggNOG-mapper	1280692.AUJL01000004_gene841	NA	NA
UHGV-0173113_14	Structural annotation	PF12691	NA	NA
UHGV-0173113_15	PHROG	phrog_3099	NA	unknown function
UHGV-0173113_15	UniRef90	UniRef90_A0A3P6KYP0	Phage capsid family protein	NA
UHGV-0173113_15	eggNOG-mapper	573061.Clocel_0217	NA	NA
UHGV-0173113_15	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0173113_16	PHROG	phrog_4450	NA	unknown function
UHGV-0173113_16	UniRef90	UniRef90_UPI001F469033	AP endonuclease	NA
UHGV-0173113_16	eggNOG-mapper	1540257.JQMW01000013_gene735	NA	NA
UHGV-0173113_16	Pfam	PF20378	NA	DUF6673
UHGV-0173113_16	Structural annotation	PF20378	NA	NA
UHGV-0173113_17	PHROG	phrog_706	NA	unknown function
UHGV-0173113_17	UniRef90	UniRef90_A0A4U9R6H8	Protein gp15	NA
UHGV-0173113_17	eggNOG-mapper	1540257.JQMW01000013_gene734	Bacteriophage Gp15 protein	NA
UHGV-0173113_17	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0173113_17	Structural annotation	PF06854	NA	NA
UHGV-0173113_18	eggNOG-mapper	1203606.HMPREF1526_01315	NA	NA
UHGV-0173113_18	Structural annotation	MF_00867	NA	NA
UHGV-0173113_19	UniRef90	UniRef90_R7F982	Conserved domain protein	NA
UHGV-0173113_19	eggNOG-mapper	573061.Clocel_0220	Mu-like prophage protein Com	NA
UHGV-0173113_19	Pfam	PF10122	NA	Mu-like_Com
UHGV-0173113_19	Structural annotation	PF10122, COG4416	NA	NA
UHGV-0173113_20	PHROG	phrog_991	tail length tape measure protein	tail
UHGV-0173113_20	UniRef90	UniRef90_A0A1M7SMG0	Phage tail tape measure protein, TP901 family, core region	NA
UHGV-0173113_20	eggNOG-mapper	1235793.C809_01928	nuclear chromosome segregation	NA
UHGV-0173113_20	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0173113_20	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0173113_20	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0173113_20	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-0173113_21	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0173113_21	UniRef90	UniRef90_R6QN45	Putative phage tail component domain protein	NA
UHGV-0173113_21	eggNOG-mapper	411490.ANACAC_00709	phage tail	NA
UHGV-0173113_21	COG	COG4722	Phage-related protein YomH	NA
UHGV-0173113_21	Structural annotation	PF05709, PF02408, TIGR01633, COG4722	NA	NA
UHGV-0173113_22	PHROG	phrog_3558	tail protein	tail
UHGV-0173113_22	UniRef90	UniRef90_A0A3R6B9Y2	Prophage_tail domain-containing protein	NA
UHGV-0173113_22	eggNOG-mapper	411465.PEPMIC_00746	Prophage endopeptidase tail	NA
UHGV-0173113_22	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0173113_22	COG	COG4926	Phage-related protein	NA
UHGV-0173113_22	Structural annotation	PF06605, PF09931, TIGR01665, COG4926	NA	NA
UHGV-0173113_23	Structural annotation	PF13157, MF_01372, NF040827, COG3542	NA	NA
UHGV-0173113_24	PHROG	phrog_18023	tail fiber protein	tail
UHGV-0173113_24	eggNOG-mapper	421531.IX38_00995	NA	NA
UHGV-0173113_25	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0173113_26	KOfam	K03733	xerC; integrase/recombinase XerC	NA
UHGV-0173113_26	PHROG	phrog_1	integrase	integration and excision
UHGV-0173113_26	UniRef90	UniRef90_A0A6B0DYA8	Tyrosine-type recombinase/integrase	NA
UHGV-0173113_26	eggNOG-mapper	632245.CLP_2897	Belongs to the 'phage' integrase family	NA
UHGV-0173113_26	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0173113_26	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0173113_26	Structural annotation	PF00589, MF_01808, TIGR02224, COG4974	NA	NA
UHGV-0173113_27	PHROG	phrog_199	holin	lysis
UHGV-0173113_27	UniRef90	UniRef90_UPI00165145A5	phage holin family protein	NA
UHGV-0173113_27	eggNOG-mapper	1033738.CAEP01000018_gene3690	COG4824 Phage-related holin (Lysis protein)	NA
UHGV-0173113_27	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0173113_27	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0173113_27	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-0173113_27	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0173113_28	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0173113_28	PHROG	phrog_3088	amidase	lysis
UHGV-0173113_28	UniRef90	UniRef90_A0A173W7U2	N-acetylmuramoyl-L-alanine amidase CwlA	NA
UHGV-0173113_28	eggNOG-mapper	1232446.BAIE02000094_gene1162	n-acetylmuramoyl-l-alanine amidase	NA
UHGV-0173113_28	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0173113_28	Pfam	PF08239	Bacterial SH3 domain	SH3_3
UHGV-0173113_28	COG	COG5632	N-acetylmuramoyl-L-alanine amidase CwlA	NA
UHGV-0173113_28	Structural annotation	PF01510, PF18342, MF_04111, MF_01354, NF008758, NF038016, COG5632	NA	NA
UHGV-0173113_32	KOfam	K18640	parM, stbA; plasmid segregation protein ParM	NA
UHGV-0173113_32	PHROG	phrog_691	partition protein	DNA, RNA and nucleotide metabolism
UHGV-0173113_32	UniRef90	UniRef90_UPI00125F964B	ParM/StbA family protein	NA
UHGV-0173113_32	eggNOG-mapper	458639.A7KUY1_9CAUD	NA	NA
UHGV-0173113_32	Pfam	PF17989	Actin like proteins N terminal domain	ALP_N
UHGV-0173113_32	Structural annotation	PF06723, MF_02207, NF010498, COG1077	NA	NA