UHGV-0173134

Genome information

Genome length 34,852 bps

CDS count 60

Completeness 100.00% (complete)

geNomad score 0.9795

Prediction confidence Confident

Genome information
Genome ID	UHGV-0173134
vOTU ID	vOTU-006376
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_593233
BioSample	NA
Country	Madagascar
Virus prediction confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	18
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9795
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	44.11
Jumbo phage	No

Genome content
Genome length	34,852 bps
GC content	56.44%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	60
CDS density	93.58%
Average CDS length	548.75 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0173134_1	eggNOG-mapper	1519439.JPJG01000023_gene533	NA	NA
UHGV-0173134_3	PHROG	phrog_372	tail protein	tail
UHGV-0173134_3	UniRef90	UniRef90_A0A1Y4MZW4	Fibronectin type-III domain-containing protein	NA
UHGV-0173134_3	eggNOG-mapper	1308863.U5J9V2_9CAUD	NA	NA
UHGV-0173134_3	Structural annotation	PF05895, MF_04116, NF010681, COG3291	NA	NA
UHGV-0173134_4	PHROG	phrog_12312	virion structural protein	head and packaging
UHGV-0173134_4	UniRef90	UniRef90_UPI001030044F	phage tail protein	NA
UHGV-0173134_4	eggNOG-mapper	596315.HMPREF0634_0228	Phage minor structural protein	NA
UHGV-0173134_4	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0173134_4	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0173134_4	COG	COG4926	Phage-related protein	NA
UHGV-0173134_6	PHROG	phrog_9959	tail length tape measure protein	tail
UHGV-0173134_6	eggNOG-mapper	411470.RUMGNA_02228	tape measure	NA
UHGV-0173134_6	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-0173134_6	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-0173134_6	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0173134_6	Structural annotation	PF20155, COG3941	NA	NA
UHGV-0173134_7	PHROG	phrog_706	NA	unknown function
UHGV-0173134_7	UniRef90	UniRef90_UPI001E629CF3	bacteriophage Gp15 family protein	NA
UHGV-0173134_7	eggNOG-mapper	428125.CLOLEP_01787	Bacteriophage Gp15 protein	NA
UHGV-0173134_7	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0173134_7	Structural annotation	PF06854	NA	NA
UHGV-0173134_9	PHROG	phrog_820	major tail protein	tail
UHGV-0173134_9	UniRef90	UniRef90_A0A3A6EPU8	S-l_SbsC_C domain-containing protein	NA
UHGV-0173134_9	eggNOG-mapper	428125.CLOLEP_00178	Belongs to the glycosyl hydrolase family 6	NA
UHGV-0173134_9	COG	COG5492	NA	NA
UHGV-0173134_9	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0173134_10	PHROG	phrog_913	minor head protein	head and packaging
UHGV-0173134_10	Structural annotation	PF12691	NA	NA
UHGV-0173134_11	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0173134_11	UniRef90	UniRef90_A0A6A7K9U7	Minor capsid protein	NA
UHGV-0173134_11	eggNOG-mapper	1294142.CINTURNW_1033	NA	NA
UHGV-0173134_11	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0173134_11	Structural annotation	PF11114	NA	NA
UHGV-0173134_12	PHROG	phrog_793	head-tail adaptor	connector
UHGV-0173134_12	UniRef90	UniRef90_A0A3R6PPU3	Minor capsid protein	NA
UHGV-0173134_12	Pfam	PF10665	Minor capsid protein	Minor_capsid_1
UHGV-0173134_12	Structural annotation	PF10665, TIGR01563, COG5614	NA	NA
UHGV-0173134_13	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0173134_13	eggNOG-mapper	1158614.I592_03418	NA	NA
UHGV-0173134_14	PHROG	phrog_422	major head protein	head and packaging
UHGV-0173134_14	UniRef90	UniRef90_A0A316T938	S-l_SbsC_C domain-containing protein	NA
UHGV-0173134_14	eggNOG-mapper	428125.CLOLEP_00183	COG NOG28280 non supervised orthologous group	NA
UHGV-0173134_14	Structural annotation	PF19821, PF18316, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0173134_16	COG	COG0783	DNA-binding ferritin-like protein (oxidative damage protectant)	NA
UHGV-0173134_16	Structural annotation	PF14530, MF_01441, NF009990, COG0783	NA	NA
UHGV-0173134_19	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0173134_19	UniRef90	UniRef90_A7VTB0	Phage minor capsid protein 2	NA
UHGV-0173134_19	eggNOG-mapper	428125.CLOLEP_01802	NA	NA
UHGV-0173134_19	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0173134_19	Pfam	PF15542	Bacterial toxin 50	Ntox50
UHGV-0173134_19	COG	COG2369	NA	NA
UHGV-0173134_19	Structural annotation	PF06152	NA	NA
UHGV-0173134_20	PHROG	phrog_533	portal protein	head and packaging
UHGV-0173134_20	UniRef90	UniRef90_UPI000C8223FC	phage portal protein	NA
UHGV-0173134_20	eggNOG-mapper	428125.CLOLEP_01803	NA	NA
UHGV-0173134_20	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0173134_20	NCBIFam	TIGR01542.1	phage portal protein	NA
UHGV-0173134_20	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0173134_21	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0173134_21	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0173134_21	UniRef90	UniRef90_A0A2V2F595	PBSX family phage terminase large subunit	NA
UHGV-0173134_21	eggNOG-mapper	642492.Clole_0814	Phage terminase, large subunit, PBSX family	NA
UHGV-0173134_21	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0173134_21	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0173134_21	COG	COG1783	Phage terminase large subunit	NA
UHGV-0173134_21	Structural annotation	PF04466, PF20441, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0173134_23	KOfam	K07319	yhdJ; adenine-specific DNA-methyltransferase [EC:2.1.1.72]	NA
UHGV-0173134_23	PHROG	phrog_498	DNA methyltransferase	other
UHGV-0173134_23	UniRef90	UniRef90_R5AIZ8	Methyltransferase	NA
UHGV-0173134_23	eggNOG-mapper	1423758.BN55_01455	DNA methylase	NA
UHGV-0173134_23	PADLOC	MTase_II_00015	Type II methyltransferase	RM
UHGV-0173134_23	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0173134_23	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0173134_23	COG	COG0863	DNA modification methylase	NA
UHGV-0173134_23	Structural annotation	PF01555, PF02195, MF_02015, MF_01872, NF010253, TIGR04285, COG0863, COG1475	NA	NA
UHGV-0173134_26	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0173134_26	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0173134_26	Structural annotation	PF04545, MF_00674, TIGR02980, COG1595	NA	NA
UHGV-0173134_30	UniRef90	UniRef90_A0A8D9PDK2	Zinc-ribbon containing domain	NA
UHGV-0173134_32	PHROG	phrog_599	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
UHGV-0173134_32	UniRef90	UniRef90_UPI000F61BDA2	Lar family restriction alleviation protein	NA
UHGV-0173134_32	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-0173134_32	NCBIFam	TIGR03655.1	Lar family restriction alleviation protein	NA
UHGV-0173134_32	dbAPIS	APIS033	Lar is functionally similar to RaI, is able to alleviate restriction and enhance modification by EcoKI. And the nucleotide sequences of their genes share 47% identity, indicating a common origin.	NA
UHGV-0173134_32	Structural annotation	PF14354, TIGR03655	NA	NA
UHGV-0173134_33	KOfam	K19779	ralR; endodeoxyribonuclease RalR [EC:3.1.-.-]	NA
UHGV-0173134_33	PHROG	phrog_599	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
UHGV-0173134_33	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-0173134_33	dbAPIS	APIS033	Lar is functionally similar to RaI, is able to alleviate restriction and enhance modification by EcoKI. And the nucleotide sequences of their genes share 47% identity, indicating a common origin.	NA
UHGV-0173134_35	Pfam	PF13384	Homeodomain-like domain	HTH_23
UHGV-0173134_36	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0173134_36	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0173134_36	UniRef90	UniRef90_A0A2V2FR21	Single-stranded DNA-binding protein	NA
UHGV-0173134_36	eggNOG-mapper	913865.DOT_1298	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-0173134_36	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0173134_36	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0173134_36	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0173134_36	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0173134_36	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0173134_37	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0173134_37	PHROG	phrog_140	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0173134_37	UniRef90	UniRef90_A0A3A6NAH2	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-0173134_37	eggNOG-mapper	1278311.AUAL01000001_gene43	crossover junction endodeoxyribonuclease activity	NA
UHGV-0173134_37	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0173134_37	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0173134_37	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0173134_39	PHROG	phrog_9804	NA	unknown function
UHGV-0173134_39	UniRef90	UniRef90_A0A174S716	Inhibitor_G39P domain-containing protein	NA
UHGV-0173134_39	eggNOG-mapper	585394.RHOM_14005	Loader and inhibitor of phage G40P	NA
UHGV-0173134_39	AcrCatalog	cluster_137185	NA	NA
UHGV-0173134_39	Pfam	PF11417	Loader and inhibitor of phage G40P	Inhibitor_G39P
UHGV-0173134_39	Structural annotation	PF11417	NA	NA
UHGV-0173134_40	eggNOG-mapper	1139219.I569_00067	DnaD domain protein	NA
UHGV-0173134_40	Pfam	PF19808	NA	DUF6291
UHGV-0173134_40	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0173134_40	Structural annotation	PF19808	NA	NA
UHGV-0173134_41	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0173134_41	UniRef90	UniRef90_UPI000C7BF263	recombination protein NinB	NA
UHGV-0173134_41	eggNOG-mapper	1507.HMPREF0262_00432	NA	NA
UHGV-0173134_41	Structural annotation	PF05772	NA	NA
UHGV-0173134_42	PHROG	phrog_659	Sak-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0173134_42	UniRef90	UniRef90_UPI000691FB66	NA	NA
UHGV-0173134_42	eggNOG-mapper	1507.HMPREF0262_00431	NA	NA
UHGV-0173134_42	Pfam	PF06378	NA	DUF1071
UHGV-0173134_42	Structural annotation	PF06378, COG4712	NA	NA
UHGV-0173134_49	UniRef90	UniRef90_R6MV99	DNA binding domain protein excisionase family	NA
UHGV-0173134_49	eggNOG-mapper	742723.HMPREF9477_00648	Helix-turn-helix domain	NA
UHGV-0173134_49	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-0173134_49	NCBIFam	TIGR01764.1	excisionase family DNA-binding protein	NA
UHGV-0173134_50	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0173134_50	PHROG	phrog_3	transcriptional repressor	transcription regulation
UHGV-0173134_50	UniRef90	UniRef90_A0A417HG00	XRE family transcriptional regulator	NA
UHGV-0173134_50	eggNOG-mapper	1449347.JQLN01000007_gene1083	Helix-turn-helix XRE-family like proteins	NA
UHGV-0173134_50	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0173134_50	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0173134_51	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0173134_51	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0173134_51	UniRef90	UniRef90_A0A355SAN3	Transcriptional regulator	NA
UHGV-0173134_51	eggNOG-mapper	411467.BACCAP_04149	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0173134_51	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0173134_51	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0173134_51	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0173134_54	KOfam	K14059	int; integrase	NA
UHGV-0173134_54	PHROG	phrog_1	integrase	integration and excision
UHGV-0173134_54	UniRef90	UniRef90_UPI001D081F27	site-specific integrase	NA
UHGV-0173134_54	eggNOG-mapper	877414.ATWA01000018_gene2094	Phage integrase family	NA
UHGV-0173134_54	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0173134_54	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0173134_54	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0173134_54	Structural annotation	PF00589, PF02920, PF14659, MF_01808, TIGR02224, COG4974	NA	NA
UHGV-0173134_56	UniRef90	UniRef90_A0A1Q9JGI6	RHH_1 domain-containing protein	NA
UHGV-0173134_56	eggNOG-mapper	1033733.CAEK01000007_gene1628	NA	NA
UHGV-0173134_56	Structural annotation	PF08965, PF19849, NF041951, COG2944	NA	NA
UHGV-0173134_57	UniRef90	UniRef90_UPI0008F814CA	helix-turn-helix domain-containing protein	NA
UHGV-0173134_58	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0173134_58	PHROG	phrog_435	endolysin	lysis
UHGV-0173134_58	UniRef90	UniRef90_A0A3D5TEB1	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0173134_58	eggNOG-mapper	697281.Mahau_0053	n-acetylmuramoyl-l-alanine amidase	NA
UHGV-0173134_58	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-0173134_58	Pfam	PF05036	SPOR domain	SPOR
UHGV-0173134_58	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0173134_58	Structural annotation	PF01520, MF_00562, TIGR02883, COG0860	NA	NA
UHGV-0173134_59	PHROG	phrog_881	holin	lysis
UHGV-0173134_59	UniRef90	UniRef90_A0A317M6V7	Dp-1 family holin	NA
UHGV-0173134_59	eggNOG-mapper	742740.HMPREF9474_02251	Putative phage holin Dp-1	NA
UHGV-0173134_59	Pfam	PF16938	Putative phage holin Dp-1	Phage_holin_Dp1
UHGV-0173134_59	Structural annotation	PF16938	NA	NA
UHGV-0173134_60	PHROG	phrog_937	hemolysin	other
UHGV-0173134_60	eggNOG-mapper	445972.ANACOL_01873	NA	NA