UHGV-0173135

Genome information

Genome length 57,791 bps

CDS count 80

Completeness 100.00% (complete)

geNomad score 0.9773

Prediction confidence Confident

Genome information
Genome ID	UHGV-0173135
vOTU ID	vOTU-005274
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_593232
BioSample	NA
Country	Madagascar
Virus prediction confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	14
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9773
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	24.46
Jumbo phage	No

Genome content
Genome length	57,791 bps
GC content	46.55%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	80
CDS density	91.78%
Average CDS length	667.24 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0173135_1	PHROG	phrog_10089	DarB-like antirestriction	moron, auxiliary metabolic gene and host takeover
UHGV-0173135_1	UniRef90	UniRef90_A0A3D0X8D0	Helicase ATP-binding domain-containing protein (Fragment)	NA
UHGV-0173135_1	eggNOG-mapper	397288.C806_03713	helicase C-terminal domain protein	NA
UHGV-0173135_1	PADLOC	DrmD_00004	DrmD	DISARM
UHGV-0173135_1	Pfam	PF04851	Type III restriction enzyme, res subunit	ResIII
UHGV-0173135_1	Pfam	PF00176	SNF2-related domain	SNF2-rel_dom
UHGV-0173135_1	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-0173135_1	Pfam	PF18857	Large polyvalent protein associated domain 38	LPD38
UHGV-0173135_1	COG	COG0553	Superfamily II DNA or RNA helicase, SNF2 family	NA
UHGV-0173135_2	KOfam	K14059	int; integrase	NA
UHGV-0173135_2	PHROG	phrog_1	integrase	integration and excision
UHGV-0173135_2	UniRef90	UniRef90_A0A353J242	Site-specific integrase	NA
UHGV-0173135_2	eggNOG-mapper	887325.HMPREF0381_0346	Phage integrase, N-terminal SAM-like domain	NA
UHGV-0173135_2	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0173135_2	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0173135_2	Structural annotation	PF00589, PF12167, MF_02055, NF040815, COG4974	NA	NA
UHGV-0173135_3	eggNOG-mapper	1408437.JNJN01000043_gene801	NA	NA
UHGV-0173135_5	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0173135_8	eggNOG-mapper	1121334.KB911071_gene1966	NA	NA
UHGV-0173135_10	KOfam	K19304	mepM; murein DD-endopeptidase [EC:3.4.24.-]	NA
UHGV-0173135_10	PHROG	phrog_7767	metallo-endopeptidase	other
UHGV-0173135_10	UniRef90	UniRef90_A0A1E1VI95	Muramidase	NA
UHGV-0173135_10	eggNOG-mapper	1158601.I585_02846	Peptidase family M23	NA
UHGV-0173135_10	Pfam	PF01551	Peptidase family M23	Peptidase_M23
UHGV-0173135_10	Pfam	PF09992	Phosphodiester glycosidase	NAGPA
UHGV-0173135_10	COG	COG0739	Murein DD-endopeptidase MepM and murein hydrolase activator NlpD, contains LysM domain	NA
UHGV-0173135_10	Structural annotation	PF01551, PF09992, NF040883, COG0739, COG3698	NA	NA
UHGV-0173135_11	PHROG	phrog_4105	NA	unknown function
UHGV-0173135_11	eggNOG-mapper	397288.C806_00056	NA	NA
UHGV-0173135_13	PHROG	phrog_13589	NA	unknown function
UHGV-0173135_13	eggNOG-mapper	411471.SUBVAR_06929	ATPase involved in DNA repair	NA
UHGV-0173135_13	COG	COG0419	DNA repair exonuclease SbcCD ATPase subunit	NA
UHGV-0173135_15	PHROG	phrog_19111	NA	unknown function
UHGV-0173135_16	COG	COG4886	Leucine-rich repeat (LRR) protein	NA
UHGV-0173135_16	Structural annotation	PF10651	NA	NA
UHGV-0173135_19	eggNOG-mapper	1449126.JQKL01000002_gene1688	NA	NA
UHGV-0173135_19	Structural annotation	PF11134, MF_00923, NF010237, NF038128, COG5276	NA	NA
UHGV-0173135_20	Structural annotation	PF20387	NA	NA
UHGV-0173135_22	PHROG	phrog_14242	major head protein	head and packaging
UHGV-0173135_22	UniRef90	UniRef90_A0A355JD53	Phage major capsid protein	NA
UHGV-0173135_22	eggNOG-mapper	588581.Cpap_1528	NA	NA
UHGV-0173135_22	NCBIFam	NF033394.1	phage major capsid protein	NA
UHGV-0173135_22	Structural annotation	PF17236, MF_04133, NF033394, COG4653	NA	NA
UHGV-0173135_24	PHROG	phrog_156	portal protein	head and packaging
UHGV-0173135_24	eggNOG-mapper	588581.Cpap_1526	NA	NA
UHGV-0173135_24	Structural annotation	PF16510, MF_04120, TIGR01538, COG4383	NA	NA
UHGV-0173135_27	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0173135_27	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0173135_27	UniRef90	UniRef90_A0A3S1ABC6	PBSX family phage terminase large subunit	NA
UHGV-0173135_27	eggNOG-mapper	696281.Desru_1088	Phage terminase large subunit	NA
UHGV-0173135_27	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0173135_27	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0173135_27	COG	COG1783	Phage terminase large subunit	NA
UHGV-0173135_27	Structural annotation	PF04466, PF20454, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0173135_28	PHROG	phrog_606	terminase small subunit	head and packaging
UHGV-0173135_28	Pfam	PF16677	DNA-packaging protein gp3	GP3_package
UHGV-0173135_28	Structural annotation	PF16677	NA	NA
UHGV-0173135_29	PHROG	phrog_13890	NA	unknown function
UHGV-0173135_29	UniRef90	UniRef90_A0A6N9P941	Antitoxin	NA
UHGV-0173135_29	eggNOG-mapper	1501230.ET33_16755	NA	NA
UHGV-0173135_29	Structural annotation	PF10723, NF010256, COG4710	NA	NA
UHGV-0173135_32	Structural annotation	PF19129, NF007348, COG5569	NA	NA
UHGV-0173135_37	PHROG	phrog_25567	NA	unknown function
UHGV-0173135_37	UniRef90	UniRef90_A0A0K9N6V9	Toxin-antitoxin system, antitoxin component, Xre family	NA
UHGV-0173135_37	eggNOG-mapper	888727.HMPREF9092_0491	Helix-turn-helix	NA
UHGV-0173135_37	COG	COG2944	DNA-binding transcriptional regulator YiaG, XRE-type HTH domain	NA
UHGV-0173135_37	Structural annotation	PF01381, NF040522, COG1476	NA	NA
UHGV-0173135_39	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-0173135_39	PHROG	phrog_3	transcriptional repressor	transcription regulation
UHGV-0173135_39	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0173135_39	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0173135_39	Structural annotation	PF01381, NF040507, COG3655	NA	NA
UHGV-0173135_41	eggNOG-mapper	756499.Desde_3141	Bacterial Ig-like domain 2	NA
UHGV-0173135_41	NCBIFam	NF033223.2	YHYH domain-containing protein	NA
UHGV-0173135_41	COG	COG5492	NA	NA
UHGV-0173135_42	UniRef90	UniRef90_A0A372V4S2	XRE family transcriptional regulator	NA
UHGV-0173135_42	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0173135_42	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0173135_42	Structural annotation	PF01381, MF_00535, NF007257, COG1396	NA	NA
UHGV-0173135_43	UniRef90	UniRef90_A0A4S2H5B3	XRE family transcriptional regulator	NA
UHGV-0173135_43	eggNOG-mapper	397291.C804_05807	sequence-specific DNA binding	NA
UHGV-0173135_43	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0173135_43	Structural annotation	PF12844, MF_00535, NF041951, COG3655	NA	NA
UHGV-0173135_48	Pfam	PF07083	NA	DUF1351
UHGV-0173135_49	PHROG	phrog_2760	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0173135_49	UniRef90	UniRef90_UPI0019154C91	phage recombination protein Bet	NA
UHGV-0173135_49	eggNOG-mapper	1122173.AXVL01000068_gene1414	DNA synthesis involved in double-strand break repair via homologous recombination	NA
UHGV-0173135_49	Pfam	PF03837	RecT family	RecT
UHGV-0173135_49	NCBIFam	TIGR01913.1	phage recombination protein Bet	NA
UHGV-0173135_49	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-0173135_49	Structural annotation	PF03837, TIGR01913, COG3723	NA	NA
UHGV-0173135_51	Structural annotation	PF13744, TIGR03070, COG3655	NA	NA
UHGV-0173135_52	PHROG	phrog_270	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0173135_52	eggNOG-mapper	1423724.BAMM01000020_gene1808	NA	NA
UHGV-0173135_52	COG	COG3756	NA	NA
UHGV-0173135_52	Structural annotation	PF19808	NA	NA
UHGV-0173135_53	PHROG	phrog_9804	NA	unknown function
UHGV-0173135_53	UniRef90	UniRef90_R6LQQ5	Inhibitor_G39P domain-containing protein	NA
UHGV-0173135_53	eggNOG-mapper	1499683.CCFF01000013_gene503	Loader and inhibitor of phage G40P	NA
UHGV-0173135_53	Pfam	PF11417	Loader and inhibitor of phage G40P	Inhibitor_G39P
UHGV-0173135_53	Structural annotation	PF11417	NA	NA
UHGV-0173135_59	KOfam	K01520	dut, DUT; dUTP pyrophosphatase [EC:3.6.1.23]	NA
UHGV-0173135_59	PHROG	phrog_135	dUTPase	DNA, RNA and nucleotide metabolism
UHGV-0173135_59	UniRef90	UniRef90_R6ILQ3	Deoxyuridine 5'-triphosphate nucleotidohydrolase	NA
UHGV-0173135_59	eggNOG-mapper	1282887.AUJG01000016_gene1113	NA	NA
UHGV-0173135_59	Pfam	PF00692	dUTPase	dUTPase
UHGV-0173135_59	NCBIFam	TIGR00576.1	dUTP diphosphatase	NA
UHGV-0173135_59	COG	COG0756	dUTP pyrophosphatase (dUTPase)	NA
UHGV-0173135_59	Structural annotation	PF00692, MF_00116, TIGR00576, COG0756	NA	NA
UHGV-0173135_60	Structural annotation	PF04319, PF08962	NA	NA
UHGV-0173135_61	PHROG	phrog_757	DNA methyltransferase	other
UHGV-0173135_61	UniRef90	UniRef90_UPI000C082058	DNA cytosine methyltransferase	NA
UHGV-0173135_61	eggNOG-mapper	748224.HMPREF9436_03069	DNA (cytosine-5-)-methyltransferase activity	NA
UHGV-0173135_61	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0173135_61	Structural annotation	PF04445, MF_00341, TIGR00537, COG0270	NA	NA
UHGV-0173135_62	PHROG	phrog_757	DNA methyltransferase	other
UHGV-0173135_62	UniRef90	UniRef90_A0A417JTT5	DNA cytosine methyltransferase	NA
UHGV-0173135_62	eggNOG-mapper	1410628.JNKS01000023_gene1763	DNA (cytosine-5-)-methyltransferase activity	NA
UHGV-0173135_62	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0173135_64	Structural annotation	PF06289, COG1582	NA	NA
UHGV-0173135_74	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0173135_74	PHROG	phrog_4632	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0173135_74	UniRef90	UniRef90_A0A1V5ZUM0	Endodeoxyribonuclease RusA	NA
UHGV-0173135_74	eggNOG-mapper	556263.FSEG_00477	NA	NA
UHGV-0173135_75	PHROG	phrog_374	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0173135_75	UniRef90	UniRef90_A0A7W0C2S3	Putative transcriptional regulator	NA
UHGV-0173135_75	eggNOG-mapper	357276.EL88_11255	NA	NA
UHGV-0173135_75	Structural annotation	PF17375	NA	NA
UHGV-0173135_76	PHROG	phrog_474	phosphofructokinase	other
UHGV-0173135_76	UniRef90	UniRef90_UPI00195F5FF7	NA	NA
UHGV-0173135_76	eggNOG-mapper	1095750.HMPREF9970_1026	NA	NA
UHGV-0173135_76	Pfam	PF19905	NA	DUF6378
UHGV-0173135_76	Structural annotation	PF19905	NA	NA
UHGV-0173135_78	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0173135_78	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0173135_78	UniRef90	UniRef90_A0A7C6GL00	Single-stranded DNA-binding protein	NA
UHGV-0173135_78	eggNOG-mapper	1232443.BAIA02000073_gene513	Single-strand binding protein family	NA
UHGV-0173135_78	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0173135_78	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0173135_78	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0173135_78	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0173135_78	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA