UHGV-0173142

Genome information

Genome length 36,369 bps

CDS count 59

Completeness 98.71% (high-quality)

geNomad score 0.9714

Prediction confidence Confident

Genome information
Genome ID	UHGV-0173142
vOTU ID	vOTU-070124
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_569043
BioSample	SAMN06233224
Country	Spain
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	98.71% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	19
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9714
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	55.76
Jumbo phage	No

Genome content
Genome length	36,369 bps
GC content	29.90%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	59
CDS density	90.29%
Average CDS length	558.00 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0173142_1	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0173142_1	UniRef90	UniRef90_UPI0017857CC8	HNH endonuclease	NA
UHGV-0173142_1	eggNOG-mapper	1280689.AUJC01000011_gene1516	endonuclease activity	NA
UHGV-0173142_1	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0173142_1	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0173142_1	Structural annotation	NF008448	NA	NA
UHGV-0173142_2	PHROG	phrog_17572	NA	unknown function
UHGV-0173142_2	UniRef90	UniRef90_A0A0H4LIJ8	Prophage ps2 protein 03	NA
UHGV-0173142_2	eggNOG-mapper	1499683.CCFF01000017_gene3026	NA	NA
UHGV-0173142_2	AcrCatalog	cluster_25152	NA	NA
UHGV-0173142_2	Structural annotation	PF13783, MF_01122	NA	NA
UHGV-0173142_3	UniRef90	UniRef90_A0A1C6JMI4	Alternative sigma factor RpoH	NA
UHGV-0173142_3	eggNOG-mapper	1280689.AUJC01000003_gene954	NA	NA
UHGV-0173142_3	Structural annotation	PF04545, MF_00683, NF008895	NA	NA
UHGV-0173142_5	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-0173142_5	PHROG	phrog_1	integrase	integration and excision
UHGV-0173142_5	UniRef90	UniRef90_A0A1C6KY93	Tyrosine recombinase XerD	NA
UHGV-0173142_5	eggNOG-mapper	536233.CLO_1819	Belongs to the 'phage' integrase family	NA
UHGV-0173142_5	Pfam	PF13495	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_4
UHGV-0173142_5	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0173142_5	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0173142_5	Structural annotation	PF00589, PF02899, MF_01807, TIGR02224, COG4973	NA	NA
UHGV-0173142_9	PHROG	phrog_2245	nucleoside triphosphate pyrophosphohydrolase	other
UHGV-0173142_9	UniRef90	UniRef90_N9WF59	MazG domain-containing protein	NA
UHGV-0173142_9	eggNOG-mapper	588581.Cpap_1498	COG NOG14118 non supervised orthologous group	NA
UHGV-0173142_10	eggNOG-mapper	1414720.CBYM010000001_gene681	NA	NA
UHGV-0173142_11	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0173142_11	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0173142_11	UniRef90	UniRef90_UPI00164A9FFF	single-stranded DNA-binding protein	NA
UHGV-0173142_11	eggNOG-mapper	1499684.CCNP01000010_gene102	Single-stranded DNA-binding protein	NA
UHGV-0173142_11	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0173142_11	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0173142_11	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0173142_11	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0173142_11	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-0173142_12	PHROG	phrog_17705	NA	unknown function
UHGV-0173142_13	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0173142_13	PHROG	phrog_140	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0173142_13	UniRef90	UniRef90_A0A1C6K6Q7	Holliday junction resolvase	NA
UHGV-0173142_13	eggNOG-mapper	1499683.CCFF01000014_gene3920	Endodeoxyribonuclease RusA	NA
UHGV-0173142_13	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0173142_13	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0173142_13	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0173142_14	KOfam	K06284	abrB; AbrB family transcriptional regulator, transcriptional pleiotropic regulator of transition state genes	NA
UHGV-0173142_14	PHROG	phrog_4681	antitoxin from a toxin-antitoxin system	moron, auxiliary metabolic gene and host takeover
UHGV-0173142_14	UniRef90	UniRef90_A0A1H0N3C0	AbrB family transcriptional regulator	NA
UHGV-0173142_14	eggNOG-mapper	536232.CLM_2558	AbrB family	NA
UHGV-0173142_14	Pfam	PF04014	Antidote-toxin recognition MazE, bacterial antitoxin	MazE_antitoxin
UHGV-0173142_14	NCBIFam	TIGR01439.1	transcriptional regulator, AbrB family	NA
UHGV-0173142_14	COG	COG2002	Bifunctional DNA-binding transcriptional regulator of stationary/sporulation/toxin gene expression and antitoxin component of the YhaV-PrlF toxin-antitoxin module	NA
UHGV-0173142_14	Structural annotation	PF04014, TIGR01439, COG2002	NA	NA
UHGV-0173142_15	PHROG	phrog_25509	NA	unknown function
UHGV-0173142_15	eggNOG-mapper	1280689.AUJC01000003_gene942	NA	NA
UHGV-0173142_17	PHROG	phrog_2514	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0173142_17	UniRef90	UniRef90_A0A174F2L9	NA	NA
UHGV-0173142_17	eggNOG-mapper	1415775.U729_2588	DnaD domain protein	NA
UHGV-0173142_17	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0173142_17	Structural annotation	PF09681, PF17214, MF_01819, TIGR01714, COG5529	NA	NA
UHGV-0173142_18	Structural annotation	PF19849	NA	NA
UHGV-0173142_19	PHROG	phrog_155	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0173142_19	UniRef90	UniRef90_A0A174F2X5	Essential recombination function protein	NA
UHGV-0173142_19	eggNOG-mapper	536232.CLM_1632	ERF superfamily	NA
UHGV-0173142_19	Pfam	PF04404	ERF superfamily	ERF
UHGV-0173142_19	Structural annotation	PF04404, TIGR00607, COG5055	NA	NA
UHGV-0173142_20	PHROG	phrog_2205	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UHGV-0173142_20	UniRef90	UniRef90_UPI00164B837B	host-nuclease inhibitor Gam family protein	NA
UHGV-0173142_20	eggNOG-mapper	1415774.U728_1122	Bacteriophage Mu Gam like protein	NA
UHGV-0173142_20	Pfam	PF07352	Bacteriophage Mu Gam like protein	Phage_Mu_Gam
UHGV-0173142_20	Structural annotation	PF07352	NA	NA
UHGV-0173142_21	UniRef90	UniRef90_UPI0018AB085E	aspartyl-phosphate phosphatase Spo0E family protein	NA
UHGV-0173142_24	eggNOG-mapper	1391647.AVSV01000022_gene2528	NA	NA
UHGV-0173142_26	PHROG	phrog_373	anti-repressor	transcription regulation
UHGV-0173142_26	UniRef90	UniRef90_UPI0006C19DFA	Rha family transcriptional regulator	NA
UHGV-0173142_26	eggNOG-mapper	386415.NT01CX_2197	ORF6C domain	NA
UHGV-0173142_26	Pfam	PF09669	Phage regulatory protein Rha (Phage_pRha)	Phage_pRha
UHGV-0173142_26	Pfam	PF10552	ORF6C domain	ORF6C
UHGV-0173142_26	NCBIFam	TIGR02681.1	phage regulatory protein, Rha family	NA
UHGV-0173142_26	COG	COG3646	Phage regulatory protein Rha	NA
UHGV-0173142_29	PHROG	phrog_7735	excisionase	integration and excision
UHGV-0173142_29	UniRef90	UniRef90_UPI0018AA0856	histidine kinase	NA
UHGV-0173142_29	eggNOG-mapper	545697.HMPREF0216_02801	NA	NA
UHGV-0173142_29	Structural annotation	PF12728, NF033787, COG3311	NA	NA
UHGV-0173142_30	KOfam	K23779	sutR; XRE family transcriptional regulator, regulator of sulfur utilization	NA
UHGV-0173142_30	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0173142_30	UniRef90	UniRef90_L1Q8J6	DNA-binding helix-turn-helix protein	NA
UHGV-0173142_30	eggNOG-mapper	1150399.AQYK01000001_gene510	sequence-specific DNA binding	NA
UHGV-0173142_30	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0173142_30	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0173142_30	Structural annotation	PF13443, NF041951, COG1476	NA	NA
UHGV-0173142_31	UniRef90	UniRef90_UPI0018AA6573	helix-turn-helix transcriptional regulator	NA
UHGV-0173142_32	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0173142_32	UniRef90	UniRef90_UPI0018A8D2D6	helix-turn-helix domain-containing protein	NA
UHGV-0173142_32	eggNOG-mapper	545697.HMPREF0216_02797	sequence-specific DNA binding	NA
UHGV-0173142_32	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0173142_32	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0173142_32	Structural annotation	PF12844, MF_00535, NF007257, COG1476	NA	NA
UHGV-0173142_33	KOfam	K14059	int; integrase	NA
UHGV-0173142_33	PHROG	phrog_1	integrase	integration and excision
UHGV-0173142_33	UniRef90	UniRef90_UPI0006C1DD90	site-specific integrase	NA
UHGV-0173142_33	eggNOG-mapper	545697.HMPREF0216_02796	Belongs to the 'phage' integrase family	NA
UHGV-0173142_33	Pfam	PF14657	Arm DNA-binding domain	Arm-DNA-bind_4
UHGV-0173142_33	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0173142_33	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0173142_33	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0173142_33	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-0173142_37	UniRef90	UniRef90_A0A1C6LDW1	Replication initiation factor	NA
UHGV-0173142_38	PHROG	phrog_1358	FtsK/SpoIIIE-like protein	moron, auxiliary metabolic gene and host takeover
UHGV-0173142_38	UniRef90	UniRef90_UPI001300DD1C	AAA family ATPase	NA
UHGV-0173142_38	eggNOG-mapper	431943.CKL_4041	FtsK/SpoIIIE family	NA
UHGV-0173142_38	Pfam	PF00004	ATPase family associated with various cellular activities (AAA)	AAA
UHGV-0173142_38	COG	COG1674	DNA segregation ATPase FtsK/SpoIIIE or related protein	NA
UHGV-0173142_39	PHROG	phrog_4223	NA	unknown function
UHGV-0173142_40	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-0173142_40	PHROG	phrog_8048	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0173142_40	UniRef90	UniRef90_UPI0018ABD2A8	HNH endonuclease	NA
UHGV-0173142_40	eggNOG-mapper	1476973.JMMB01000006_gene3329	NA	NA
UHGV-0173142_41	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0173142_41	PHROG	phrog_3088	amidase	lysis
UHGV-0173142_41	UniRef90	UniRef90_A0A1C6KYJ2	N-acetylmuramoyl-L-alanine amidase CwlA	NA
UHGV-0173142_41	eggNOG-mapper	545697.HMPREF0216_02873	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0173142_41	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0173142_41	Pfam	PF05036	SPOR domain	SPOR
UHGV-0173142_41	COG	COG2931	Ca2+-binding protein, RTX toxin-related	NA
UHGV-0173142_42	PHROG	phrog_1129	holin	lysis
UHGV-0173142_42	UniRef90	UniRef90_UPI00189EBD01	phage holin family protein	NA
UHGV-0173142_42	eggNOG-mapper	1414720.CBYM010000001_gene714	Phage holin family Hol44, in holin superfamily V	NA
UHGV-0173142_42	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-0173142_42	Structural annotation	PF06946	NA	NA
UHGV-0173142_43	UniRef90	UniRef90_UPI000DCFCC11	iduronate sulfatase	NA
UHGV-0173142_43	eggNOG-mapper	457396.CSBG_01061	NA	NA
UHGV-0173142_45	PHROG	phrog_5240	tail fiber protein	tail
UHGV-0173142_45	UniRef90	UniRef90_UPI0018AB4B38	SGNH/GDSL hydrolase family protein	NA
UHGV-0173142_45	eggNOG-mapper	880070.Cycma_0058	GDSL-like Lipase/Acylhydrolase family	NA
UHGV-0173142_45	Pfam	PF10651	BppU N-terminal domain	BppU_N
UHGV-0173142_45	Pfam	PF13472	GDSL-like Lipase/Acylhydrolase family	Lipase_GDSL_2
UHGV-0173142_45	COG	COG2755	Lysophospholipase L1 or related esterase. Includes spore coat protein LipC/YcsK	NA
UHGV-0173142_45	Structural annotation	PF10651, PF16255, COG3470	NA	NA
UHGV-0173142_46	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-0173142_46	UniRef90	UniRef90_UPI00164C43B2	phage tail protein	NA
UHGV-0173142_46	eggNOG-mapper	1280689.AUJC01000011_gene1532	Prophage endopeptidase tail	NA
UHGV-0173142_46	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0173142_46	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0173142_46	COG	COG4926	Phage-related protein	NA
UHGV-0173142_46	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0173142_47	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0173142_47	UniRef90	UniRef90_UPI00177FFD1D	phage tail family protein	NA
UHGV-0173142_47	eggNOG-mapper	1280689.AUJC01000011_gene1531	phage tail	NA
UHGV-0173142_47	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-0173142_47	NCBIFam	TIGR01633.1	distal tail protein Dit	NA
UHGV-0173142_47	COG	COG4722	Phage-related protein YomH	NA
UHGV-0173142_47	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-0173142_48	PHROG	phrog_1533	tail length tape measure protein	tail
UHGV-0173142_48	UniRef90	UniRef90_UPI0018AA57C8	phage tail tape measure protein	NA
UHGV-0173142_48	eggNOG-mapper	1280689.AUJC01000011_gene1530	tape measure	NA
UHGV-0173142_48	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0173142_48	COG	COG1280	Threonine/homoserine/homoserine lactone efflux protein	NA
UHGV-0173142_49	PHROG	phrog_2115	tail protein	tail
UHGV-0173142_49	UniRef90	UniRef90_A0A4V2V083	Tail assembly chaperone	NA
UHGV-0173142_49	eggNOG-mapper	203119.Cthe_1710	NA	NA
UHGV-0173142_49	Structural annotation	PF11836	NA	NA
UHGV-0173142_50	PHROG	phrog_88	major tail protein	tail
UHGV-0173142_50	UniRef90	UniRef90_L1QK33	Phage major tail protein, phi13 family	NA
UHGV-0173142_50	eggNOG-mapper	545697.HMPREF0216_00917	phage major tail protein	NA
UHGV-0173142_50	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0173142_50	COG	COG5492	NA	NA
UHGV-0173142_50	Structural annotation	PF06488, TIGR01603, COG3498	NA	NA
UHGV-0173142_51	PHROG	phrog_78	tail terminator	connector
UHGV-0173142_51	UniRef90	UniRef90_UPI0003697F12	NA	NA
UHGV-0173142_51	eggNOG-mapper	203119.Cthe_1714	NA	NA
UHGV-0173142_51	Structural annotation	PF05657, NF040576, COG3167	NA	NA
UHGV-0173142_52	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0173142_52	UniRef90	UniRef90_UPI00177BAF9F	HK97 gp10 family phage protein	NA
UHGV-0173142_52	eggNOG-mapper	1280689.AUJC01000011_gene1525	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0173142_52	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0173142_52	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-0173142_52	Structural annotation	PF04883, TIGR01725	NA	NA
UHGV-0173142_53	PHROG	phrog_1951	head-tail adaptor	connector
UHGV-0173142_53	UniRef90	UniRef90_UPI0017807C43	phage head closure protein	NA
UHGV-0173142_53	eggNOG-mapper	1280689.AUJC01000011_gene1524	NA	NA
UHGV-0173142_53	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-0173142_53	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0173142_54	PHROG	phrog_5223	neck protein	connector
UHGV-0173142_54	UniRef90	UniRef90_UPI0003FE9443	head-tail connector protein	NA
UHGV-0173142_54	eggNOG-mapper	1280689.AUJC01000011_gene1523	NA	NA
UHGV-0173142_54	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-0173142_54	Structural annotation	TIGR01560	NA	NA
UHGV-0173142_55	PHROG	phrog_10	major head protein	head and packaging
UHGV-0173142_55	UniRef90	UniRef90_UPI00041EF31C	phage major capsid protein	NA
UHGV-0173142_55	eggNOG-mapper	1280689.AUJC01000011_gene1521	Phage major capsid protein, HK97 family	NA
UHGV-0173142_55	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0173142_55	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0173142_55	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0173142_55	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0173142_56	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0173142_56	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0173142_56	UniRef90	UniRef90_UPI000C0853A7	Clp protease ClpP	NA
UHGV-0173142_56	eggNOG-mapper	1280689.AUJC01000011_gene1520	Belongs to the peptidase S14 family	NA
UHGV-0173142_56	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0173142_56	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0173142_56	Structural annotation	PF00574, MF_00444, NF011091, COG0740	NA	NA
UHGV-0173142_57	PHROG	phrog_12	portal protein	head and packaging
UHGV-0173142_57	UniRef90	UniRef90_A0A084J9C3	Phage portal protein	NA
UHGV-0173142_57	eggNOG-mapper	318464.IO99_13760	Portal protein	NA
UHGV-0173142_57	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0173142_57	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0173142_57	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0173142_58	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0173142_58	UniRef90	UniRef90_A0A348Z0Y0	Terminase large subunit	NA
UHGV-0173142_58	eggNOG-mapper	318464.IO99_13765	Terminase	NA
UHGV-0173142_58	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0173142_58	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0173142_58	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0173142_58	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-0173142_59	PHROG	phrog_1066	NA	unknown function
UHGV-0173142_59	eggNOG-mapper	1382358.JHVN01000024_gene1703	NA	NA
UHGV-0173142_59	Structural annotation	PF05119, TIGR01558	NA	NA