UHGV-0173167

Genome information

Genome length 22,885 bps

CDS count 30

Completeness 50.10% (medium-quality)

geNomad score 0.9780

Prediction confidence Confident

Genome information
Genome ID	UHGV-0173167
vOTU ID	vOTU-028652
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_583193
BioSample	SAMN09781767
Country	Madagascar
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	50.10% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	3
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9780
Virus hallmark genes (geNomad)	1
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	10.42
Jumbo phage	No

Genome content
Genome length	22,885 bps
GC content	39.69%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	30
CDS density	92.31%
Average CDS length	708.10 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0173167_1	PHROG	phrog_8841	DNA primase/helicase	DNA, RNA and nucleotide metabolism
UHGV-0173167_1	UniRef90	UniRef90_A0A7U9JR13	DNA/RNA helicase, superfamily II	NA
UHGV-0173167_1	eggNOG-mapper	476272.RUMHYD_01742	NA	NA
UHGV-0173167_1	Pfam	PF06048	NA	DUF927
UHGV-0173167_1	Pfam	PF18662	Cch helix turn helix domain	HTH_56
UHGV-0173167_1	COG	COG5519	NA	NA
UHGV-0173167_1	Structural annotation	PF06048, PF18662, MF_00016, NF011296, COG5519	NA	NA
UHGV-0173167_2	KOfam	K02316	dnaG; DNA primase [EC:2.7.7.101]	NA
UHGV-0173167_2	PHROG	phrog_11992	NA	unknown function
UHGV-0173167_2	UniRef90	UniRef90_A0A395X7I4	DNA primase	NA
UHGV-0173167_2	eggNOG-mapper	476272.RUMHYD_01741	CHC2 zinc finger	NA
UHGV-0173167_2	PADLOC	drt-UG29	DRT	DRT
UHGV-0173167_2	Pfam	PF01807	CHC2 zinc finger	zf-CHC2
UHGV-0173167_2	COG	COG0358	DNA primase (bacterial type)	NA
UHGV-0173167_2	Structural annotation	PF01807, PF00401	NA	NA
UHGV-0173167_4	PHROG	phrog_3490	ERCC4-type nuclease	DNA, RNA and nucleotide metabolism
UHGV-0173167_4	UniRef90	UniRef90_A0A395XB48	ERCC4 domain-containing protein	NA
UHGV-0173167_4	eggNOG-mapper	357809.Cphy_2986	NA	NA
UHGV-0173167_4	Pfam	PF02732	ERCC4 domain	ERCC4
UHGV-0173167_4	Structural annotation	PF03834, NF040956, COG1948	NA	NA
UHGV-0173167_5	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0173167_5	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0173167_5	UniRef90	UniRef90_A0A412ELG8	Single-stranded DNA-binding protein	NA
UHGV-0173167_5	eggNOG-mapper	658655.HMPREF0988_02584	Single-strand binding protein family	NA
UHGV-0173167_5	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0173167_5	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0173167_5	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0173167_5	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0173167_5	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-0173167_6	PHROG	phrog_7838	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0173167_6	UniRef90	UniRef90_A0A8D9UGW3	DNA repair protein RAD52-like protein	NA
UHGV-0173167_6	eggNOG-mapper	742767.HMPREF9456_02052	NA	NA
UHGV-0173167_6	Structural annotation	PF04098, TIGR00607, COG5055	NA	NA
UHGV-0173167_7	UniRef90	UniRef90_R6RDX0	Arginyl-tRNA synthetase	NA
UHGV-0173167_8	UniRef90	UniRef90_UPI000E53E799	NA	NA
UHGV-0173167_8	Pfam	PF20063	NA	DUF6462
UHGV-0173167_9	Structural annotation	NF001645	NA	NA
UHGV-0173167_14	PHROG	phrog_478	site-specific recombination directionality factor RDF	integration and excision
UHGV-0173167_14	UniRef90	UniRef90_A0A373Q857	YopX domain-containing protein	NA
UHGV-0173167_14	eggNOG-mapper	1111121.HMPREF1247_0834	NA	NA
UHGV-0173167_19	Structural annotation	PF13601, MF_01819, NF038251, COG1846	NA	NA
UHGV-0173167_21	KOfam	K18830	pezA; HTH-type transcriptional regulator / antitoxin PezA	NA
UHGV-0173167_21	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0173167_21	UniRef90	UniRef90_UPI001C01C52A	helix-turn-helix domain-containing protein	NA
UHGV-0173167_21	eggNOG-mapper	445972.ANACOL_03315	NA	NA
UHGV-0173167_21	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0173167_21	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0173167_21	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0173167_23	PHROG	phrog_215	structural protein with Ig domain	head and packaging
UHGV-0173167_23	UniRef90	UniRef90_A0A839JXV0	Ig domain-containing protein	NA
UHGV-0173167_23	eggNOG-mapper	1410624.JNKK01000014_gene1631	Bacterial Ig-like domain (group 2)	NA
UHGV-0173167_23	Pfam	PF02368	Bacterial Ig-like domain (group 2)	Big_2
UHGV-0173167_23	COG	COG2304	Secreted protein containing bacterial Ig-like domain and vWFA domain	NA
UHGV-0173167_23	Structural annotation	PF02368, PF07233, NF038353, NF005261	NA	NA
UHGV-0173167_24	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0173167_24	PHROG	phrog_95	integrase	integration and excision
UHGV-0173167_24	UniRef90	UniRef90_A0A2V2D7K6	Recombinase family protein	NA
UHGV-0173167_24	eggNOG-mapper	33035.JPJF01000109_gene439	Resolvase, N terminal domain	NA
UHGV-0173167_24	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0173167_24	Pfam	PF07508	Recombinase	Recombinase
UHGV-0173167_24	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0173167_24	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0173167_24	Structural annotation	PF07508, PF00239, NF041201, COG1961	NA	NA
UHGV-0173167_25	PHROG	phrog_38078	NA	unknown function
UHGV-0173167_25	UniRef90	UniRef90_A0A412SB50	SH3b domain-containing protein	NA
UHGV-0173167_25	eggNOG-mapper	476272.RUMHYD_03304	autolytic lysozime (1,4-beta-N-acetylmuramidase), family 25 of glycosyl hydrolases	NA
UHGV-0173167_25	Pfam	PF08239	Bacterial SH3 domain	SH3_3
UHGV-0173167_25	COG	COG3409	Peptidoglycan-binding (PGRP) domain of peptidoglycan hydrolases	NA
UHGV-0173167_25	Structural annotation	PF08239, PF09953, NF040678, COG3942, COG4991	NA	NA
UHGV-0173167_28	KOfam	K06237	COL4A; collagen type IV alpha	NA
UHGV-0173167_28	PHROG	phrog_6616	tail protein	tail
UHGV-0173167_28	UniRef90	UniRef90_A0A2V2D052	Peptidase S74 domain-containing protein	NA
UHGV-0173167_28	eggNOG-mapper	33035.JPJF01000043_gene1002	NA	NA
UHGV-0173167_28	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-0173167_28	Structural annotation	PF05113, PF01835, PF03921, NF033848, COG3500	NA	NA
UHGV-0173167_29	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0173167_30	PHROG	phrog_28918	NA	unknown function
UHGV-0173167_30	UniRef90	UniRef90_A0A1C5P271	Chromosome segregation protein	NA
UHGV-0173167_30	eggNOG-mapper	411459.RUMOBE_01384	phage tail tape measure protein	NA
UHGV-0173167_30	COG	COG5412	Phage-related protein	NA