UHGV-0173197

Genome information

Genome length 38,176 bps

CDS count 60

Completeness 95.95% (high-quality)

geNomad score 0.9811

Prediction confidence Confident

Genome information
Genome ID	UHGV-0173197
vOTU ID	vOTU-010889
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_581074
BioSample	NA
Country	Madagascar
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	95.95% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	17
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9811
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	43.84
Jumbo phage	No

Genome content
Genome length	38,176 bps
GC content	53.42%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	60
CDS density	90.64%
Average CDS length	580.10 bps
tRNA count	3
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0173197_1	PHROG	phrog_4433	NA	unknown function
UHGV-0173197_1	eggNOG-mapper	33035.JPJF01000122_gene2458	regulation of DNA-templated transcription, elongation	NA
UHGV-0173197_1	COG	COG5164	Transcription elongation factor SPT5	NA
UHGV-0173197_1	Structural annotation	PF12120, NF000066	NA	NA
UHGV-0173197_3	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0173197_3	PHROG	phrog_63	anti-repressor Ant	transcription regulation
UHGV-0173197_3	UniRef90	UniRef90_A0A844D5R9	Phage regulatory protein/antirepressor Ant	NA
UHGV-0173197_3	eggNOG-mapper	1423816.BACQ01000027_gene970	Phage regulatory protein Rha (Phage_pRha)	NA
UHGV-0173197_3	Pfam	PF09669	Phage regulatory protein Rha (Phage_pRha)	Phage_pRha
UHGV-0173197_3	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0173197_3	NCBIFam	TIGR02681.1	phage regulatory protein, Rha family	NA
UHGV-0173197_3	COG	COG3645	Phage antirepressor protein YoqD, KilAC domain	NA
UHGV-0173197_3	Structural annotation	PF03374, PF09669, TIGR02681, COG3645, COG3561	NA	NA
UHGV-0173197_6	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0173197_6	UniRef90	UniRef90_UPI001C009F10	helix-turn-helix transcriptional regulator	NA
UHGV-0173197_6	eggNOG-mapper	44251.PDUR_01590	Transcriptional regulator	NA
UHGV-0173197_6	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0173197_6	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0173197_6	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0173197_7	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0173197_7	UniRef90	UniRef90_UPI001C020D87	helix-turn-helix domain-containing protein	NA
UHGV-0173197_7	eggNOG-mapper	198094.BA_3829	Helix-turn-helix XRE-family like proteins	NA
UHGV-0173197_7	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0173197_7	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0173197_9	PHROG	phrog_4980	superinfection exclusion	moron, auxiliary metabolic gene and host takeover
UHGV-0173197_9	eggNOG-mapper	658086.HMPREF0994_06731	Host cell surface-exposed lipoprotein	NA
UHGV-0173197_9	Pfam	PF07553	Host cell surface-exposed lipoprotein	Lipoprotein_Ltp
UHGV-0173197_9	COG	COG3064	Membrane protein TolA involved in colicin uptake	NA
UHGV-0173197_9	Structural annotation	PF02631, MF_01114, NF001062, COG2137	NA	NA
UHGV-0173197_12	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0173197_12	PHROG	phrog_2328	transcriptional repressor	transcription regulation
UHGV-0173197_12	UniRef90	UniRef90_UPI0018CC79B4	helix-turn-helix domain-containing protein	NA
UHGV-0173197_12	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0173197_12	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0173197_12	Structural annotation	PF13560, MF_00535, NF041951, COG1396	NA	NA
UHGV-0173197_13	KOfam	K14059	int; integrase	NA
UHGV-0173197_13	PHROG	phrog_1	integrase	integration and excision
UHGV-0173197_13	UniRef90	UniRef90_A0A174D176	Tyrosine recombinase XerD	NA
UHGV-0173197_13	eggNOG-mapper	411471.SUBVAR_05137	Belongs to the 'phage' integrase family	NA
UHGV-0173197_13	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0173197_13	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0173197_13	Structural annotation	PF00589, MF_01808, NF007246, COG4974	NA	NA
UHGV-0173197_15	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0173197_16	PHROG	phrog_16490	NA	unknown function
UHGV-0173197_16	eggNOG-mapper	476272.RUMHYD_01770	NA	NA
UHGV-0173197_21	eggNOG-mapper	1384065.JAGS01000001_gene3265	sequence-specific DNA binding	NA
UHGV-0173197_21	COG	COG2944	DNA-binding transcriptional regulator YiaG, XRE-type HTH domain	NA
UHGV-0173197_21	Structural annotation	PF13560, NF040522	NA	NA
UHGV-0173197_23	PHROG	phrog_15303	NA	unknown function
UHGV-0173197_25	KOfam	K07273	acm; lysozyme	NA
UHGV-0173197_25	PHROG	phrog_291	endolysin	lysis
UHGV-0173197_25	UniRef90	UniRef90_UPI001D0EE7D8	glycoside hydrolase family 25 protein	NA
UHGV-0173197_25	eggNOG-mapper	748224.HMPREF9436_00154	hydrolase, family 25	NA
UHGV-0173197_25	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0173197_25	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-0173197_25	Structural annotation	PF01183, COG3757	NA	NA
UHGV-0173197_26	PHROG	phrog_11541	NA	unknown function
UHGV-0173197_26	eggNOG-mapper	556261.HMPREF0240_03316	GDSL-like Lipase/Acylhydrolase	NA
UHGV-0173197_27	PHROG	phrog_18110	NA	unknown function
UHGV-0173197_27	UniRef90	UniRef90_A0A1Y3TWK1	Prophage_tail domain-containing protein	NA
UHGV-0173197_27	eggNOG-mapper	871584.D9ZNF0_9CAUD	peptidoglycan catabolic process	NA
UHGV-0173197_27	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0173197_27	Structural annotation	PF06605, PF18994, TIGR01665, COG4926	NA	NA
UHGV-0173197_28	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0173197_28	UniRef90	UniRef90_A0A1C6G0J5	Phage tail protein	NA
UHGV-0173197_28	Structural annotation	PF20753, PF20195, TIGR01633, COG4722	NA	NA
UHGV-0173197_29	PHROG	phrog_9959	tail length tape measure protein	tail
UHGV-0173197_29	UniRef90	UniRef90_UPI001C038824	tape measure protein	NA
UHGV-0173197_29	eggNOG-mapper	358681.BBR47_29250	tape measure	NA
UHGV-0173197_29	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-0173197_29	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-0173197_29	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0173197_29	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-0173197_30	PHROG	phrog_706	NA	unknown function
UHGV-0173197_30	UniRef90	UniRef90_UPI0011AF1F88	Gp15 family bacteriophage protein	NA
UHGV-0173197_30	eggNOG-mapper	1321782.HMPREF1986_02275	Bacteriophage Gp15 protein	NA
UHGV-0173197_30	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0173197_30	Structural annotation	PF06854	NA	NA
UHGV-0173197_31	PHROG	phrog_4450	NA	unknown function
UHGV-0173197_31	Structural annotation	PF20378	NA	NA
UHGV-0173197_32	UniRef90	UniRef90_A0A174M1L1	S-l_SbsC_C domain-containing protein	NA
UHGV-0173197_32	eggNOG-mapper	411461.DORFOR_01172	NA	NA
UHGV-0173197_32	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0173197_33	PHROG	phrog_3266	tail completion	connector
UHGV-0173197_33	UniRef90	UniRef90_UPI001F2730AA	chloramphenicol resistance protein	NA
UHGV-0173197_33	eggNOG-mapper	545697.HMPREF0216_02854	NA	NA
UHGV-0173197_33	Structural annotation	PF12691	NA	NA
UHGV-0173197_34	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0173197_34	UniRef90	UniRef90_UPI000B10EF5E	minor capsid protein	NA
UHGV-0173197_34	eggNOG-mapper	718252.FP2_06630	Minor capsid protein	NA
UHGV-0173197_34	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0173197_34	Structural annotation	PF11114	NA	NA
UHGV-0173197_35	PHROG	phrog_3366	NA	unknown function
UHGV-0173197_35	Pfam	PF20536	NA	DUF6751
UHGV-0173197_35	Structural annotation	PF20536	NA	NA
UHGV-0173197_36	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0173197_37	PHROG	phrog_10	major head protein	head and packaging
UHGV-0173197_37	UniRef90	UniRef90_A0A2A7AII3	Phage major capsid protein	NA
UHGV-0173197_37	eggNOG-mapper	1120998.AUFC01000030_gene2236	Phage capsid family	NA
UHGV-0173197_37	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0173197_37	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0173197_37	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0173197_37	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0173197_38	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0173197_38	UniRef90	UniRef90_A0A1C6FYX1	Phage minor structural protein GP20	NA
UHGV-0173197_38	eggNOG-mapper	663278.Ethha_0497	NA	NA
UHGV-0173197_38	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0173197_38	Structural annotation	PF06810	NA	NA
UHGV-0173197_39	PHROG	phrog_478	site-specific recombination directionality factor RDF	integration and excision
UHGV-0173197_39	UniRef90	UniRef90_A0A373Q857	YopX domain-containing protein	NA
UHGV-0173197_39	eggNOG-mapper	1111121.HMPREF1247_0834	NA	NA
UHGV-0173197_41	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0173197_41	UniRef90	UniRef90_D4K446	Phage minor capsid protein 2	NA
UHGV-0173197_41	eggNOG-mapper	718252.FP2_06690	NA	NA
UHGV-0173197_41	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0173197_41	COG	COG2369	NA	NA
UHGV-0173197_41	Structural annotation	PF06152	NA	NA
UHGV-0173197_42	PHROG	phrog_533	portal protein	head and packaging
UHGV-0173197_42	UniRef90	UniRef90_A0A291T9A9	Capsid protein	NA
UHGV-0173197_42	eggNOG-mapper	748224.HMPREF9436_03340	NA	NA
UHGV-0173197_42	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0173197_43	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0173197_43	PHROG	phrog_10250	NA	unknown function
UHGV-0173197_43	UniRef90	UniRef90_E2ZNR1	Phage terminase, large subunit, PBSX family	NA
UHGV-0173197_43	eggNOG-mapper	748224.HMPREF9436_03341	Phage terminase, large subunit, PBSX family	NA
UHGV-0173197_43	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0173197_43	Pfam	PF17289	Terminase RNaseH-like domain	Terminase_6C
UHGV-0173197_43	COG	COG1783	Phage terminase large subunit	NA
UHGV-0173197_43	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0173197_44	PHROG	phrog_309	terminase small subunit	head and packaging
UHGV-0173197_44	UniRef90	UniRef90_A0A8F8QRC5	Transposase	NA
UHGV-0173197_44	eggNOG-mapper	748224.HMPREF9436_03342	transposase activity	NA
UHGV-0173197_44	COG	COG2963	Transposase InsE and inactivated derivatives	NA
UHGV-0173197_45	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-0173197_45	PHROG	phrog_498	DNA methyltransferase	other
UHGV-0173197_45	UniRef90	UniRef90_R5AIZ8	Methyltransferase	NA
UHGV-0173197_45	eggNOG-mapper	742823.HMPREF9465_00225	PFAM DNA methylase N-4 N-6	NA
UHGV-0173197_45	PADLOC	MTase_II_00015	Type II methyltransferase	RM
UHGV-0173197_45	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0173197_45	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0173197_45	COG	COG0863	DNA modification methylase	NA
UHGV-0173197_45	Structural annotation	PF01555, PF02195, MF_02015, MF_01872, NF010253, TIGR04285, COG0863, COG1475	NA	NA
UHGV-0173197_46	Structural annotation	PF07374, MF_00245, TIGR01636, COG2739	NA	NA
UHGV-0173197_47	PHROG	phrog_9298	radical SAM domain protein	other
UHGV-0173197_47	UniRef90	UniRef90_A0A6L5TFB3	Radical SAM protein	NA
UHGV-0173197_47	eggNOG-mapper	1235798.C817_03186	NA	NA
UHGV-0173197_47	COG	COG1032	Radical SAM superfamily enzyme YgiQ, UPF0313 family	NA
UHGV-0173197_47	Structural annotation	MF_01864, NF010916, COG2516	NA	NA
UHGV-0173197_48	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0173197_48	PHROG	phrog_34	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0173197_48	UniRef90	UniRef90_A0A844DBG8	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-0173197_48	eggNOG-mapper	875454.BAEW01000002_gene491	Endodeoxyribonuclease RusA	NA
UHGV-0173197_48	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0173197_48	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0173197_48	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0173197_49	PHROG	phrog_3136	NA	unknown function
UHGV-0173197_49	UniRef90	UniRef90_A0A6N7TMC2	ASCH domain-containing protein	NA
UHGV-0173197_49	COG	COG4933	Predicted transcriptional regulator, contains an HTH and PUA-like domains	NA
UHGV-0173197_49	Structural annotation	PF12961, NF008917, COG4933	NA	NA
UHGV-0173197_51	PHROG	phrog_15768	NA	unknown function
UHGV-0173197_51	UniRef90	UniRef90_E2ZNS6	NA	NA
UHGV-0173197_51	eggNOG-mapper	748224.HMPREF9436_03357	NA	NA
UHGV-0173197_51	Pfam	PF19808	NA	DUF6291
UHGV-0173197_51	Structural annotation	PF19808	NA	NA
UHGV-0173197_52	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0173197_52	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0173197_52	UniRef90	UniRef90_A0A844DI52	Single-stranded DNA-binding protein	NA
UHGV-0173197_52	eggNOG-mapper	718252.FP2_06770	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-0173197_52	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0173197_52	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0173197_52	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0173197_52	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0173197_52	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-0173197_53	PHROG	phrog_561	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0173197_53	UniRef90	UniRef90_UPI0011C8A287	recombinase RecT	NA
UHGV-0173197_53	eggNOG-mapper	742733.HMPREF9469_01849	NA	NA
UHGV-0173197_53	Structural annotation	PF03837, NF007351, COG3723	NA	NA
UHGV-0173197_55	Structural annotation	PF14120	NA	NA
UHGV-0173197_57	Structural annotation	PF12270, NF040944	NA	NA
UHGV-0173197_58	Structural annotation	PF10743, NF033787	NA	NA
UHGV-0173197_60	PHROG	phrog_27197	NA	unknown function
UHGV-0173197_60	eggNOG-mapper	394503.Ccel_3068	regulation of DNA-templated transcription, elongation	NA
UHGV-0173197_60	COG	COG5164	Transcription elongation factor SPT5	NA
UHGV-0173197_60	Structural annotation	NF007410	NA	NA