UHGV-0173219

Genome information

Genome length 39,283 bps

CDS count 55

Completeness 99.90% (high-quality)

geNomad score 0.9779

Prediction confidence Confident

Genome information
Genome ID	UHGV-0173219
vOTU ID	vOTU-080188
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_584646
BioSample	SAMN09781790
Country	Madagascar
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	21
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9779
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	37.48
Jumbo phage	No

Genome content
Genome length	39,283 bps
GC content	40.09%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	55
CDS density	91.84%
Average CDS length	657.98 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0173219_1	PHROG	phrog_33061	NA	unknown function
UHGV-0173219_1	eggNOG-mapper	411468.CLOSCI_01514	NA	NA
UHGV-0173219_1	Structural annotation	PF19087, NF033202	NA	NA
UHGV-0173219_2	KOfam	K17733	cwlK; peptidoglycan LD-endopeptidase CwlK [EC:3.4.-.-]	NA
UHGV-0173219_2	PHROG	phrog_2649	endolysin	lysis
UHGV-0173219_2	UniRef90	UniRef90_UPI0018972856	M15 family metallopeptidase	NA
UHGV-0173219_2	eggNOG-mapper	397290.C810_03258	D-alanyl-D-alanine carboxypeptidase	NA
UHGV-0173219_2	Pfam	PF13539	D-alanyl-D-alanine carboxypeptidase	Peptidase_M15_4
UHGV-0173219_2	COG	COG1876	LD-carboxypeptidase LdcB, LAS superfamily	NA
UHGV-0173219_2	Structural annotation	PF02557, PF18342, MF_01924, NF007557, COG4991, COG2173	NA	NA
UHGV-0173219_3	PHROG	phrog_199	holin	lysis
UHGV-0173219_3	UniRef90	UniRef90_UPI0019247BD1	phage holin family protein	NA
UHGV-0173219_3	eggNOG-mapper	742740.HMPREF9474_02333	Bacteriophage holin family	NA
UHGV-0173219_3	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0173219_3	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0173219_3	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-0173219_3	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0173219_4	PHROG	phrog_16573	NA	unknown function
UHGV-0173219_4	UniRef90	UniRef90_A0A564VXL8	Bacterial Ig-like domain (Group 2)	NA
UHGV-0173219_4	eggNOG-mapper	411459.RUMOBE_01721	NA	NA
UHGV-0173219_4	Pfam	PF10651	BppU N-terminal domain	BppU_N
UHGV-0173219_6	PHROG	phrog_18110	NA	unknown function
UHGV-0173219_6	UniRef90	UniRef90_A0A7X4ZR94	Prophage_tail domain-containing protein	NA
UHGV-0173219_6	eggNOG-mapper	411459.RUMOBE_01723	Phage minor structural protein	NA
UHGV-0173219_6	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0173219_6	Pfam	PF13884	Chaperone of endosialidase	Peptidase_S74
UHGV-0173219_6	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0173219_6	COG	COG4926	Phage-related protein	NA
UHGV-0173219_7	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0173219_7	UniRef90	UniRef90_UPI001D05C493	phage tail family protein	NA
UHGV-0173219_7	eggNOG-mapper	411459.RUMOBE_01724	phage tail	NA
UHGV-0173219_7	COG	COG4722	Phage-related protein YomH	NA
UHGV-0173219_7	Structural annotation	PF20753, PF19266, TIGR01633, COG4722	NA	NA
UHGV-0173219_8	KOfam	K20478	GOLGB1; golgin subfamily B member 1	NA
UHGV-0173219_8	PHROG	phrog_1533	tail length tape measure protein	tail
UHGV-0173219_8	UniRef90	UniRef90_UPI001D0873A5	phage tail tape measure protein	NA
UHGV-0173219_8	eggNOG-mapper	180332.JTGN01000004_gene2272	Phage tail tape measure protein, TP901 family	NA
UHGV-0173219_8	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0173219_8	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0173219_8	COG	COG5280	Phage-related minor tail protein	NA
UHGV-0173219_8	Structural annotation	PF10145, PF05384, TIGR01760, NF006545, COG5280	NA	NA
UHGV-0173219_9	PHROG	phrog_25901	NA	unknown function
UHGV-0173219_9	eggNOG-mapper	411468.CLOSCI_01498	NA	NA
UHGV-0173219_9	Structural annotation	PF10109	NA	NA
UHGV-0173219_10	PHROG	phrog_13494	NA	unknown function
UHGV-0173219_10	eggNOG-mapper	411468.CLOSCI_01497	NA	NA
UHGV-0173219_10	Structural annotation	PF20378	NA	NA
UHGV-0173219_11	PHROG	phrog_88	major tail protein	tail
UHGV-0173219_11	UniRef90	UniRef90_A0A412Q217	Major tail protein	NA
UHGV-0173219_11	eggNOG-mapper	411468.CLOSCI_01496	phage major tail protein, phi13 family	NA
UHGV-0173219_11	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0173219_11	COG	COG5492	NA	NA
UHGV-0173219_11	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-0173219_12	PHROG	phrog_78	tail terminator	connector
UHGV-0173219_12	eggNOG-mapper	411468.CLOSCI_01495	NA	NA
UHGV-0173219_12	Structural annotation	PF05657, NF040576, COG3167	NA	NA
UHGV-0173219_13	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0173219_13	UniRef90	UniRef90_B0NDG6	Phage protein, HK97 gp10 family	NA
UHGV-0173219_13	eggNOG-mapper	411468.CLOSCI_01494	Phage protein, HK97 gp10 family	NA
UHGV-0173219_13	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-0173219_13	Structural annotation	PF04883, TIGR01725	NA	NA
UHGV-0173219_14	PHROG	phrog_25	head closure Hc1	connector
UHGV-0173219_14	UniRef90	UniRef90_A0A412Q2M1	Phage head-tail joining protein	NA
UHGV-0173219_14	eggNOG-mapper	742741.HMPREF9475_00427	Phage head-tail joining protein	NA
UHGV-0173219_14	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0173219_14	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-0173219_14	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0173219_15	UniRef90	UniRef90_A0A5S4VQ23	Phage gp6-like head-tail connector protein	NA
UHGV-0173219_15	eggNOG-mapper	411468.CLOSCI_01492	NA	NA
UHGV-0173219_15	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-0173219_16	PHROG	phrog_10	major head protein	head and packaging
UHGV-0173219_16	UniRef90	UniRef90_A0A174ZQ75	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0173219_16	eggNOG-mapper	411468.CLOSCI_01491	Phage capsid family	NA
UHGV-0173219_16	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0173219_16	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0173219_16	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0173219_16	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0173219_17	KOfam	K07486	K07486; transposase	NA
UHGV-0173219_17	PHROG	phrog_2199	transposase	integration and excision
UHGV-0173219_17	UniRef90	UniRef90_A8RN69	DEDD_Tnp_IS110 domain-containing protein	NA
UHGV-0173219_17	eggNOG-mapper	1121115.AXVN01000197_gene2445	Transposase IS116/IS110/IS902 family	NA
UHGV-0173219_17	Pfam	PF01548	Transposase	DEDD_Tnp_IS110
UHGV-0173219_17	Pfam	PF02371	Transposase IS116/IS110/IS902 family	Transposase_20
UHGV-0173219_17	NCBIFam	NF033542.1	IS110 family transposase	NA
UHGV-0173219_17	COG	COG3547	Transposase	NA
UHGV-0173219_17	Structural annotation	PF01548, PF02371, MF_00651, NF033542, COG3547	NA	NA
UHGV-0173219_18	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0173219_18	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0173219_18	UniRef90	UniRef90_A0A1C5T576	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-0173219_18	eggNOG-mapper	742741.HMPREF9475_00424	Clp protease	NA
UHGV-0173219_18	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0173219_18	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0173219_18	Structural annotation	PF00574, MF_00444, NF011090, COG0740	NA	NA
UHGV-0173219_19	PHROG	phrog_12	portal protein	head and packaging
UHGV-0173219_19	UniRef90	UniRef90_A0A412Q229	Phage portal protein	NA
UHGV-0173219_19	eggNOG-mapper	411468.CLOSCI_01489	Phage portal protein	NA
UHGV-0173219_19	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0173219_19	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0173219_19	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0173219_19	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0173219_20	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0173219_20	UniRef90	UniRef90_A0A174ZPG1	Phage terminase-like protein, large subunit	NA
UHGV-0173219_20	eggNOG-mapper	742741.HMPREF9475_00422	Phage Terminase	NA
UHGV-0173219_20	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0173219_20	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0173219_20	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0173219_20	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0173219_21	PHROG	phrog_83	terminase small subunit	head and packaging
UHGV-0173219_21	UniRef90	UniRef90_A0A414EC99	Phage terminase small subunit P27 family	NA
UHGV-0173219_21	eggNOG-mapper	742741.HMPREF9475_00421	Phage terminase, small subunit	NA
UHGV-0173219_21	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0173219_21	NCBIFam	TIGR01558.1	phage terminase small subunit P27 family	NA
UHGV-0173219_21	COG	COG3747	Phage terminase, small subunit	NA
UHGV-0173219_21	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0173219_22	PHROG	phrog_144	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0173219_22	UniRef90	UniRef90_B0NDF8	HNH endonuclease domain protein	NA
UHGV-0173219_22	eggNOG-mapper	411468.CLOSCI_01486	NA	NA
UHGV-0173219_23	PHROG	phrog_1558	NA	unknown function
UHGV-0173219_23	eggNOG-mapper	742741.HMPREF9475_00419	NA	NA
UHGV-0173219_23	Structural annotation	PF06530, TIGR01636	NA	NA
UHGV-0173219_24	PHROG	phrog_4292	NA	unknown function
UHGV-0173219_25	PHROG	phrog_15198	NA	unknown function
UHGV-0173219_25	Pfam	PF04448	NA	DUF551
UHGV-0173219_27	KOfam	K07339	hicA; mRNA interferase HicA [EC:3.1.-.-]	NA
UHGV-0173219_27	PHROG	phrog_353	toxin	moron, auxiliary metabolic gene and host takeover
UHGV-0173219_27	UniRef90	UniRef90_A0A173T1A3	YcfA-like protein	NA
UHGV-0173219_27	eggNOG-mapper	1235835.C814_03453	NA	NA
UHGV-0173219_27	Pfam	PF07927	HicA toxin of bacterial toxin-antitoxin,	HicA_toxin
UHGV-0173219_27	Structural annotation	PF07927, COG1724	NA	NA
UHGV-0173219_28	KOfam	K18843	hicB; antitoxin HicB	NA
UHGV-0173219_28	PHROG	phrog_497	toxin-antitoxin system HicB-like	moron, auxiliary metabolic gene and host takeover
UHGV-0173219_28	UniRef90	UniRef90_A0A1H3WZU0	Predicted nuclease of the RNAse H fold, HicB family	NA
UHGV-0173219_28	eggNOG-mapper	397287.C807_02204	HicB_like antitoxin of bacterial toxin-antitoxin system	NA
UHGV-0173219_28	Pfam	PF15919	HicB_like antitoxin of bacterial toxin-antitoxin system	HicB_lk_antitox
UHGV-0173219_28	COG	COG1598	Antitoxin component HicB of the HicAB toxin-antitoxin system	NA
UHGV-0173219_28	Structural annotation	PF15919, COG1598	NA	NA
UHGV-0173219_29	UniRef90	UniRef90_UPI00192387A0	NA	NA
UHGV-0173219_29	eggNOG-mapper	1256908.HMPREF0373_00667	NA	NA
UHGV-0173219_31	PHROG	phrog_1891	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0173219_31	UniRef90	UniRef90_C4ZC58	HNHc domain-containing protein	NA
UHGV-0173219_31	eggNOG-mapper	1321372.AQQB01000060_gene44	HNH endonuclease	NA
UHGV-0173219_31	Pfam	PF13392	HNH endonuclease	HNH_3
UHGV-0173219_31	Structural annotation	PF13392	NA	NA
UHGV-0173219_32	PHROG	phrog_2044	RNA polymerase beta subunit	DNA, RNA and nucleotide metabolism
UHGV-0173219_32	eggNOG-mapper	1449126.JQKL01000051_gene3179	NA	NA
UHGV-0173219_32	Structural annotation	MF_00337, NF010671, COG1722	NA	NA
UHGV-0173219_33	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0173219_33	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0173219_33	UniRef90	UniRef90_A0A3R5XI83	Single-stranded DNA-binding protein	NA
UHGV-0173219_33	eggNOG-mapper	411468.CLOSCI_01483	Single-strand binding protein family	NA
UHGV-0173219_33	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0173219_33	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0173219_33	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0173219_33	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0173219_33	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-0173219_34	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-0173219_34	PHROG	phrog_15982	NA	unknown function
UHGV-0173219_34	UniRef90	UniRef90_A0A414EC83	NA	NA
UHGV-0173219_34	eggNOG-mapper	742741.HMPREF9475_00414	NA	NA
UHGV-0173219_34	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0173219_34	Pfam	PF12961	NA	DUF3850
UHGV-0173219_34	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0173219_34	Structural annotation	PF12961, PF02195, MF_02015, MF_00684, TIGR04285, NF003443, COG1475, COG3097	NA	NA
UHGV-0173219_36	KOfam	K03496	parA, soj; chromosome partitioning protein	NA
UHGV-0173219_36	PHROG	phrog_164	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0173219_36	UniRef90	UniRef90_A0A412T732	ParA family protein	NA
UHGV-0173219_36	eggNOG-mapper	1235792.C808_00063	CobQ CobB MinD ParA nucleotide binding domain protein	NA
UHGV-0173219_36	Pfam	PF13614	AAA domain	AAA_31
UHGV-0173219_36	COG	COG1192	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	NA
UHGV-0173219_36	Structural annotation	PF13614, MF_00533, NF010443, COG1192	NA	NA
UHGV-0173219_37	PHROG	phrog_20014	NA	unknown function
UHGV-0173219_37	eggNOG-mapper	411470.RUMGNA_02042	NA	NA
UHGV-0173219_38	PHROG	phrog_824	NA	unknown function
UHGV-0173219_38	UniRef90	UniRef90_UPI001D062227	VRR-NUC domain-containing protein	NA
UHGV-0173219_38	eggNOG-mapper	742741.HMPREF9475_00407	VRR_NUC	NA
UHGV-0173219_38	Pfam	PF08774	VRR-NUC domain	VRR_NUC
UHGV-0173219_39	PHROG	phrog_38136	NA	unknown function
UHGV-0173219_39	eggNOG-mapper	411468.CLOSCI_01471	NA	NA
UHGV-0173219_40	Structural annotation	PF04612	NA	NA
UHGV-0173219_41	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0173219_41	UniRef90	UniRef90_A0A4P8IFK4	NA	NA
UHGV-0173219_41	eggNOG-mapper	411468.CLOSCI_01469	NA	NA
UHGV-0173219_41	Structural annotation	PF21578	NA	NA
UHGV-0173219_43	PHROG	phrog_6058	NA	unknown function
UHGV-0173219_43	UniRef90	UniRef90_A0A416Z3U8	Helix-turn-helix domain-containing protein	NA
UHGV-0173219_43	Structural annotation	PF12728, NF033787	NA	NA
UHGV-0173219_44	PHROG	phrog_36092	NA	unknown function
UHGV-0173219_44	eggNOG-mapper	411468.CLOSCI_01466	NA	NA
UHGV-0173219_45	PHROG	phrog_750	NA	unknown function
UHGV-0173219_45	eggNOG-mapper	97139.C824_00051	NA	NA
UHGV-0173219_45	Structural annotation	PF13835, NF040858	NA	NA
UHGV-0173219_46	eggNOG-mapper	411468.CLOSCI_01459	NA	NA
UHGV-0173219_51	KOfam	K18830	pezA; HTH-type transcriptional regulator / antitoxin PezA	NA
UHGV-0173219_51	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0173219_51	UniRef90	UniRef90_A0A1C6JSC5	Antitoxin PezA	NA
UHGV-0173219_51	eggNOG-mapper	742741.HMPREF9475_00400	Helix-turn-helix XRE-family like proteins	NA
UHGV-0173219_51	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0173219_51	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0173219_51	Structural annotation	PF01381, MF_00535, NF007257, COG1476	NA	NA
UHGV-0173219_53	KOfam	K23779	sutR; XRE family transcriptional regulator, regulator of sulfur utilization	NA
UHGV-0173219_53	PHROG	phrog_3	transcriptional repressor	transcription regulation
UHGV-0173219_53	UniRef90	UniRef90_A0A1Q6KGJ8	Transcriptional regulator	NA
UHGV-0173219_53	eggNOG-mapper	411468.CLOSCI_01455	Helix-turn-helix XRE-family like proteins	NA
UHGV-0173219_53	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0173219_53	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0173219_54	PHROG	phrog_37629	NA	unknown function
UHGV-0173219_54	UniRef90	UniRef90_UPI001867E88E	HIRAN domain-containing protein	NA
UHGV-0173219_54	eggNOG-mapper	742741.HMPREF9475_00398	NA	NA
UHGV-0173219_54	Structural annotation	PF08797	NA	NA
UHGV-0173219_55	KOfam	K14059	int; integrase	NA
UHGV-0173219_55	PHROG	phrog_1	integrase	integration and excision
UHGV-0173219_55	UniRef90	UniRef90_UPI0019246A2B	tyrosine-type recombinase/integrase	NA
UHGV-0173219_55	eggNOG-mapper	585394.RHOM_14030	Belongs to the 'phage' integrase family	NA
UHGV-0173219_55	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0173219_55	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0173219_55	Structural annotation	PF00589, MF_01808, NF007246, COG4974	NA	NA