UHGV-0173231

Genome information

Genome length 25,964 bps

CDS count 42

Completeness 61.58% (medium-quality)

geNomad score 0.9807

Prediction confidence Confident

Genome information
Genome ID	UHGV-0173231
vOTU ID	vOTU-028661
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_588531
BioSample	SAMN09781748
Country	Madagascar
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	61.58% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	8
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9807
Virus hallmark genes (geNomad)	5
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	12.48
Jumbo phage	No

Genome content
Genome length	25,964 bps
GC content	54.27%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	42
CDS density	91.06%
Average CDS length	564.86 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0173231_2	PHROG	phrog_544	major head protein	head and packaging
UHGV-0173231_2	UniRef90	UniRef90_R0BKA1	S-l_SbsC_C domain-containing protein	NA
UHGV-0173231_2	eggNOG-mapper	476272.RUMHYD_01776	NA	NA
UHGV-0173231_2	Structural annotation	PF03864, MF_04119, TIGR04387, COG4834	NA	NA
UHGV-0173231_4	PHROG	phrog_17977	NA	unknown function
UHGV-0173231_4	UniRef90	UniRef90_A0A844DHJ8	Phage head closure protein	NA
UHGV-0173231_4	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0173231_5	UniRef90	UniRef90_A0A415JI88	NA	NA
UHGV-0173231_5	Structural annotation	PF13554	NA	NA
UHGV-0173231_6	PHROG	phrog_885	major tail protein	tail
UHGV-0173231_6	eggNOG-mapper	1111121.HMPREF1247_0789	NA	NA
UHGV-0173231_6	Structural annotation	PF06488, TIGR01603, COG5437	NA	NA
UHGV-0173231_9	PHROG	phrog_9959	tail length tape measure protein	tail
UHGV-0173231_9	UniRef90	UniRef90_UPI001C038824	tape measure protein	NA
UHGV-0173231_9	eggNOG-mapper	1492737.FEM08_12070	tape measure	NA
UHGV-0173231_9	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-0173231_9	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-0173231_9	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0173231_9	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-0173231_10	PHROG	phrog_3558	tail protein	tail
UHGV-0173231_10	UniRef90	UniRef90_UPI001C01D15B	phage tail protein	NA
UHGV-0173231_10	eggNOG-mapper	1120933.ATUY01000004_gene1009	Prophage endopeptidase tail	NA
UHGV-0173231_10	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0173231_10	COG	COG4926	Phage-related protein	NA
UHGV-0173231_10	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0173231_12	UniRef90	UniRef90_A0A417QGC1	MtfA protein	NA
UHGV-0173231_12	eggNOG-mapper	1235792.C808_00094	phage tail	NA
UHGV-0173231_12	COG	COG4722	Phage-related protein YomH	NA
UHGV-0173231_12	Structural annotation	PF05709, TIGR01633, COG4722	NA	NA
UHGV-0173231_13	PHROG	phrog_23587	NA	unknown function
UHGV-0173231_13	eggNOG-mapper	748224.HMPREF9436_01176	NA	NA
UHGV-0173231_14	eggNOG-mapper	748224.HMPREF9436_00405	domain, Protein	NA
UHGV-0173231_14	COG	COG5492	NA	NA
UHGV-0173231_14	Structural annotation	COG4675	NA	NA
UHGV-0173231_16	Structural annotation	NF040910	NA	NA
UHGV-0173231_17	KOfam	K07273	acm; lysozyme	NA
UHGV-0173231_17	PHROG	phrog_291	endolysin	lysis
UHGV-0173231_17	UniRef90	UniRef90_A0A564U0D3	Autolytic lysozyme	NA
UHGV-0173231_17	eggNOG-mapper	718252.FP2_04890	hydrolase, family 25	NA
UHGV-0173231_17	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0173231_17	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-0173231_17	Structural annotation	PF01183, TIGR04053, COG3757	NA	NA
UHGV-0173231_18	PHROG	phrog_4105	NA	unknown function
UHGV-0173231_18	eggNOG-mapper	657322.FPR_27220	NA	NA
UHGV-0173231_19	PHROG	phrog_15303	NA	unknown function
UHGV-0173231_20	KOfam	K24213	C1QTNF9; complement C1q and tumor necrosis factor-related protein 9	NA
UHGV-0173231_20	PHROG	phrog_5073	tail fiber protein	tail
UHGV-0173231_20	UniRef90	UniRef90_UPI0018835F0C	collagen-like protein	NA
UHGV-0173231_20	eggNOG-mapper	411483.FAEPRAA2165_00757	NA	NA
UHGV-0173231_20	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-0173231_20	Structural annotation	PF10651	NA	NA
UHGV-0173231_23	PHROG	phrog_374	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0173231_23	UniRef90	UniRef90_E6MK73	AP2 domain protein	NA
UHGV-0173231_23	eggNOG-mapper	887929.HMP0721_2409	NA	NA
UHGV-0173231_23	Structural annotation	PF18337, PF00847	NA	NA
UHGV-0173231_24	COG	COG2944	DNA-binding transcriptional regulator YiaG, XRE-type HTH domain	NA
UHGV-0173231_24	Structural annotation	PF13560, NF040522	NA	NA
UHGV-0173231_26	PHROG	phrog_3754	NA	unknown function
UHGV-0173231_26	eggNOG-mapper	1235790.C805_00054	NA	NA
UHGV-0173231_27	PHROG	phrog_21718	NA	unknown function
UHGV-0173231_27	eggNOG-mapper	397290.C810_05210	NA	NA
UHGV-0173231_28	PHROG	phrog_22984	NA	unknown function
UHGV-0173231_29	PHROG	phrog_16490	NA	unknown function
UHGV-0173231_29	eggNOG-mapper	397290.C810_01328	NA	NA
UHGV-0173231_31	PHROG	phrog_20016	NA	unknown function
UHGV-0173231_31	UniRef90	UniRef90_A0A285PT46	Tumour necrosis factor-like domain	NA
UHGV-0173231_31	eggNOG-mapper	1226322.HMPREF1545_00077	NA	NA
UHGV-0173231_31	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0173231_32	Structural annotation	PF12510	NA	NA
UHGV-0173231_34	KOfam	K14059	int; integrase	NA
UHGV-0173231_34	PHROG	phrog_1	integrase	integration and excision
UHGV-0173231_34	UniRef90	UniRef90_E2ZNV1	Site-specific recombinase, phage integrase family	NA
UHGV-0173231_34	eggNOG-mapper	748224.HMPREF9436_03382	Belongs to the 'phage' integrase family	NA
UHGV-0173231_34	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0173231_34	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0173231_34	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0173231_34	Structural annotation	PF00589, PF14659, MF_01808, NF007246, COG4973	NA	NA
UHGV-0173231_35	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0173231_35	UniRef90	UniRef90_UPI0018CC79B4	helix-turn-helix domain-containing protein	NA
UHGV-0173231_35	eggNOG-mapper	266265.Bxe_A3948	Helix-turn-helix domain	NA
UHGV-0173231_35	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0173231_35	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0173231_35	Structural annotation	PF13560, MF_00535, NF041951, COG1396	NA	NA
UHGV-0173231_38	PHROG	phrog_4980	superinfection exclusion	moron, auxiliary metabolic gene and host takeover
UHGV-0173231_38	UniRef90	UniRef90_A0A3A9G8M1	Zinc-ribbon domain-containing protein	NA
UHGV-0173231_38	eggNOG-mapper	658086.HMPREF0994_06731	Host cell surface-exposed lipoprotein	NA
UHGV-0173231_38	Pfam	PF07553	Host cell surface-exposed lipoprotein	Lipoprotein_Ltp
UHGV-0173231_38	COG	COG3064	Membrane protein TolA involved in colicin uptake	NA
UHGV-0173231_38	Structural annotation	PF02631, MF_01114, NF001062, COG2137	NA	NA
UHGV-0173231_39	eggNOG-mapper	321955.AAGP01000017_gene2211	NA	NA
UHGV-0173231_39	Structural annotation	PF16900, NF040991	NA	NA
UHGV-0173231_41	Structural annotation	PF21715, NF008122, COG1846	NA	NA
UHGV-0173231_42	UniRef90	UniRef90_UPI001C020D87	helix-turn-helix domain-containing protein	NA
UHGV-0173231_42	Structural annotation	PF12844, MF_00535, NF007257, COG1396	NA	NA