UHGV-0173253

Genome information

Genome length 37,642 bps

CDS count 44

Completeness 86.61% (medium-quality)

geNomad score 0.9654

Prediction confidence Confident

Genome information
Genome ID	UHGV-0173253
vOTU ID	vOTU-022457
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_591582
BioSample	SAMN09781791
Country	Madagascar
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	86.61% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	18
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9654
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	16.49
Jumbo phage	No

Genome content
Genome length	37,642 bps
GC content	50.43%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	44
CDS density	95.45%
Average CDS length	819.21 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0173253_2	KOfam	K14059	int; integrase	NA
UHGV-0173253_2	PHROG	phrog_1	integrase	integration and excision
UHGV-0173253_2	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0173253_2	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-0173253_3	UniRef90	UniRef90_UPI0003B5564A	ribonucleoside-triphosphate reductase	NA
UHGV-0173253_3	eggNOG-mapper	944480.ATUV01000001_gene645	Anaerobic ribonucleoside-triphosphate reductase	NA
UHGV-0173253_3	Pfam	PF13597	Anaerobic ribonucleoside-triphosphate reductase	NRDD
UHGV-0173253_3	COG	COG1328	Anaerobic ribonucleoside-triphosphate reductase	NA
UHGV-0173253_6	KOfam	K01185	E3.2.1.17; lysozyme [EC:3.2.1.17]	NA
UHGV-0173253_6	PHROG	phrog_7	endolysin	lysis
UHGV-0173253_6	UniRef90	UniRef90_A0A1Y4DMM0	Lysozyme	NA
UHGV-0173253_6	eggNOG-mapper	1283300.ATXB01000002_gene2532	lysozyme	NA
UHGV-0173253_6	Pfam	PF00959	Phage lysozyme	Phage_lysozyme
UHGV-0173253_6	COG	COG3772	Phage-related lysozyme (muramidase), GH24 family	NA
UHGV-0173253_6	Structural annotation	PF00959, MF_04136, COG3772	NA	NA
UHGV-0173253_9	eggNOG-mapper	556268.OFAG_00945	tail collar domain protein	NA
UHGV-0173253_9	COG	COG4675	Phage tail collar domain	NA
UHGV-0173253_11	PHROG	phrog_1640	tail protein	tail
UHGV-0173253_11	eggNOG-mapper	665942.HMPREF1022_00147	NA	NA
UHGV-0173253_11	Structural annotation	PF03906	NA	NA
UHGV-0173253_12	PHROG	phrog_1640	tail protein	tail
UHGV-0173253_12	eggNOG-mapper	941449.dsx2_2650	NA	NA
UHGV-0173253_13	PHROG	phrog_9880	NA	unknown function
UHGV-0173253_13	UniRef90	UniRef90_A0A353GYD4	GGDEF domain-containing protein	NA
UHGV-0173253_13	eggNOG-mapper	568816.Acin_1824	NA	NA
UHGV-0173253_13	Pfam	PF18834	Large polyvalent protein associated domain 22	LPD22
UHGV-0173253_13	Pfam	PF18760	ADP-Ribosyltransferase in polyvalent proteins	ART-PolyVal
UHGV-0173253_15	PHROG	phrog_418	internal virion protein	head and packaging
UHGV-0173253_16	PHROG	phrog_308	internal virion protein	head and packaging
UHGV-0173253_16	eggNOG-mapper	1188795.K7ZPX6_9CAUD	NA	NA
UHGV-0173253_16	Structural annotation	PF11039, MF_02210, NF011709, COG0456	NA	NA
UHGV-0173253_17	PHROG	phrog_376	tail protein	tail
UHGV-0173253_17	UniRef90	UniRef90_A0A0U1KV93	NA	NA
UHGV-0173253_17	eggNOG-mapper	1123288.SOV_1c10720	NA	NA
UHGV-0173253_18	PHROG	phrog_394	tail protein	tail
UHGV-0173253_18	eggNOG-mapper	76869.PputGB1_1754	NA	NA
UHGV-0173253_18	Structural annotation	PF17212	NA	NA
UHGV-0173253_19	PHROG	phrog_427	NA	unknown function
UHGV-0173253_19	UniRef90	UniRef90_A0A6G5YJN2	BIG2 domain-containing protein	NA
UHGV-0173253_19	eggNOG-mapper	1200557.JHWV01000001_gene271	NA	NA
UHGV-0173253_19	Pfam	PF21190	Bbp16	Bbp16
UHGV-0173253_19	Structural annotation	PF21190, NF033675	NA	NA
UHGV-0173253_20	PHROG	phrog_212	major head protein	head and packaging
UHGV-0173253_20	UniRef90	UniRef90_A0A077DE24	NA	NA
UHGV-0173253_20	eggNOG-mapper	1072685.IX83_07085	NA	NA
UHGV-0173253_20	Pfam	PF20911	Major capsid protein GP7	GP7
UHGV-0173253_20	Structural annotation	PF20911, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0173253_21	PHROG	phrog_458	protease	other
UHGV-0173253_21	UniRef90	UniRef90_A0A1Y4DJB1	Death domain-containing protein	NA
UHGV-0173253_21	eggNOG-mapper	1150626.PHAMO_180123	NA	NA
UHGV-0173253_22	PHROG	phrog_528	NA	unknown function
UHGV-0173253_23	PHROG	phrog_332	head-tail adaptor	connector
UHGV-0173253_23	UniRef90	UniRef90_A0A3C1FAU3	Phage tail protein	NA
UHGV-0173253_23	eggNOG-mapper	1200557.JHWV01000001_gene275	Bacteriophage head to tail connecting protein	NA
UHGV-0173253_23	Pfam	PF12236	Bacteriophage head to tail connecting protein	Head-tail_con
UHGV-0173253_23	Structural annotation	PF12236, MF_04120, TIGR01538, COG4695	NA	NA
UHGV-0173253_25	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0173253_25	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0173253_25	UniRef90	UniRef90_A0A6M3K7S1	Putative terminase	NA
UHGV-0173253_25	eggNOG-mapper	1408428.JNJP01000030_gene963	Terminase RNaseH-like domain	NA
UHGV-0173253_25	COG	COG5323	Phage large terminase packaging protein	NA
UHGV-0173253_25	Structural annotation	PF03237, PF17289, MF_04146, TIGR01547, COG4373	NA	NA
UHGV-0173253_26	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0173253_26	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-0173253_26	UniRef90	UniRef90_A0A7T2CTG4	Terminase small subunit	NA
UHGV-0173253_26	eggNOG-mapper	387092.NIS_0464	Terminase small subunit	NA
UHGV-0173253_26	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0173253_27	PHROG	phrog_4268	transcriptional repressor	transcription regulation
UHGV-0173253_27	UniRef90	UniRef90_UPI000E31EB47	putative addiction module antidote protein	NA
UHGV-0173253_27	eggNOG-mapper	1040982.AXAL01000009_gene6096	addiction module antidote protein	NA
UHGV-0173253_27	Pfam	PF21716	Probable addiction module antidote protein	dnstrm_HI1420
UHGV-0173253_27	COG	COG3636	NA	NA
UHGV-0173253_28	PHROG	phrog_3445	toxin	moron, auxiliary metabolic gene and host takeover
UHGV-0173253_28	UniRef90	UniRef90_A0A538RP27	Type II toxin-antitoxin system RelE/ParE family toxin	NA
UHGV-0173253_28	eggNOG-mapper	643473.KB235931_gene4771	NA	NA
UHGV-0173253_28	NCBIFam	TIGR02683.1	type II toxin-antitoxin system RelE/ParE family toxin	NA
UHGV-0173253_28	COG	COG3657	Putative component of the toxin-antitoxin plasmid stabilization module	NA
UHGV-0173253_28	Structural annotation	PF05973, TIGR02683, COG3657	NA	NA
UHGV-0173253_30	PHROG	phrog_270	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0173253_30	eggNOG-mapper	261292.Nit79A3_1404	ROK family	NA
UHGV-0173253_30	COG	COG3355	Predicted transcriptional regulator	NA
UHGV-0173253_33	PHROG	phrog_98	NA	unknown function
UHGV-0173253_33	UniRef90	UniRef90_UPI0015896781	YopX family protein	NA
UHGV-0173253_33	eggNOG-mapper	1158612.I580_01887	YopX protein	NA
UHGV-0173253_33	Pfam	PF09643	YopX protein	YopX
UHGV-0173253_33	NCBIFam	TIGR01671.1	phage conserved hypothetical protein TIGR01671	NA
UHGV-0173253_33	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-0173253_35	PHROG	phrog_98	NA	unknown function
UHGV-0173253_35	UniRef90	UniRef90_A0A1L6RCD8	YopX domain-containing protein	NA
UHGV-0173253_35	eggNOG-mapper	1220589.CD32_00355	YopX protein	NA
UHGV-0173253_35	Pfam	PF09643	YopX protein	YopX
UHGV-0173253_35	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-0173253_40	PHROG	phrog_415	polynucleotide kinase	other
UHGV-0173253_40	UniRef90	UniRef90_A0A142KAD3	Polynucleotide kinase	NA
UHGV-0173253_40	eggNOG-mapper	1229203.KI301992_gene693	AAA domain	NA
UHGV-0173253_40	COG	COG4639	Predicted kinase	NA
UHGV-0173253_40	Structural annotation	PF03767, TIGR01533, COG2503	NA	NA
UHGV-0173253_43	PHROG	phrog_2439	transcriptional regulator	transcription regulation
UHGV-0173253_43	UniRef90	UniRef90_A0A650F3V0	HTH cro/C1-type domain-containing protein	NA
UHGV-0173253_43	Pfam	PF01381	Helix-turn-helix	HTH_3