UHGV-0173254

Genome information

Genome length 28,687 bps

CDS count 44

Completeness 65.41% (medium-quality)

geNomad score 0.9792

Prediction confidence Confident

Genome information
Genome ID	UHGV-0173254
vOTU ID	vOTU-028664
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_591583
BioSample	SAMN09781791
Country	Madagascar
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	65.41% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	Yes
CheckV viral markers	11
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9792
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	27.73
Jumbo phage	No

Genome content
Genome length	28,687 bps
GC content	41.60%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	44
CDS density	93.07%
Average CDS length	610.77 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0173254_1	PHROG	phrog_6616	tail protein	tail
UHGV-0173254_1	UniRef90	UniRef90_A0A395X7B3	Peptidase S74 domain-containing protein	NA
UHGV-0173254_1	eggNOG-mapper	1121866.AUGK01000003_gene1439	Phage minor structural protein	NA
UHGV-0173254_1	COG	COG4926	Phage-related protein	NA
UHGV-0173254_1	Structural annotation	PF05113, PF18432, NF033848, NF011735, COG4379	NA	NA
UHGV-0173254_2	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0173254_3	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0173254_3	UniRef90	UniRef90_A0A1C5N853	Phage-related protein	NA
UHGV-0173254_3	eggNOG-mapper	411459.RUMOBE_01384	phage tail tape measure protein	NA
UHGV-0173254_3	COG	COG5412	Phage-related protein	NA
UHGV-0173254_3	Structural annotation	PF11172	NA	NA
UHGV-0173254_4	PHROG	phrog_706	NA	unknown function
UHGV-0173254_4	UniRef90	UniRef90_UPI001C0F2CC6	Gp15 family bacteriophage protein	NA
UHGV-0173254_4	eggNOG-mapper	411459.RUMOBE_01383	Bacteriophage Gp15 protein	NA
UHGV-0173254_4	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0173254_4	Structural annotation	PF06854	NA	NA
UHGV-0173254_5	PHROG	phrog_11299	NA	unknown function
UHGV-0173254_5	eggNOG-mapper	411459.RUMOBE_01382	NA	NA
UHGV-0173254_5	Structural annotation	PF10666	NA	NA
UHGV-0173254_6	PHROG	phrog_3099	NA	unknown function
UHGV-0173254_6	eggNOG-mapper	33035.JPJF01000106_gene3126	NA	NA
UHGV-0173254_6	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0173254_7	PHROG	phrog_3266	tail completion	connector
UHGV-0173254_7	eggNOG-mapper	476272.RUMHYD_01781	NA	NA
UHGV-0173254_7	Structural annotation	PF12691	NA	NA
UHGV-0173254_8	PHROG	phrog_3366	NA	unknown function
UHGV-0173254_8	eggNOG-mapper	476272.RUMHYD_01779	NA	NA
UHGV-0173254_8	Structural annotation	PF20536, COG5614	NA	NA
UHGV-0173254_9	PHROG	phrog_1129	holin	lysis
UHGV-0173254_9	UniRef90	UniRef90_A0A395X7B2	Enolase	NA
UHGV-0173254_9	eggNOG-mapper	411461.DORFOR_00721	NA	NA
UHGV-0173254_9	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-0173254_9	Structural annotation	PF06946	NA	NA
UHGV-0173254_10	PHROG	phrog_28328	NA	unknown function
UHGV-0173254_11	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0173254_11	eggNOG-mapper	476272.RUMHYD_01778	NA	NA
UHGV-0173254_12	PHROG	phrog_247	major head protein	head and packaging
UHGV-0173254_12	UniRef90	UniRef90_A0A3R6K7E9	Phage coat protein	NA
UHGV-0173254_12	eggNOG-mapper	1292035.H476_1014	NA	NA
UHGV-0173254_12	Pfam	PF20036	Major capsid protein 13-like	Gp13-like
UHGV-0173254_12	COG	COG1106	ATPase/GTPase, AAA15 family	NA
UHGV-0173254_12	Structural annotation	PF20036, MF_04113, TIGR04387, COG4653	NA	NA
UHGV-0173254_13	UniRef90	UniRef90_UPI001C0EBA51	phage scaffolding protein	NA
UHGV-0173254_15	Structural annotation	PF00210, MF_01441, NF011597, COG1528	NA	NA
UHGV-0173254_16	PHROG	phrog_20016	NA	unknown function
UHGV-0173254_16	UniRef90	UniRef90_A0A316MV88	BclA_C domain-containing protein	NA
UHGV-0173254_16	eggNOG-mapper	1226322.HMPREF1545_00077	NA	NA
UHGV-0173254_16	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0173254_17	eggNOG-mapper	476272.RUMHYD_01770	NA	NA
UHGV-0173254_19	PHROG	phrog_21718	NA	unknown function
UHGV-0173254_19	eggNOG-mapper	1235790.C805_00058	NA	NA
UHGV-0173254_22	UniRef90	UniRef90_A0A1Q9J4Y8	HTH cro/C1-type domain-containing protein	NA
UHGV-0173254_23	UniRef90	UniRef90_U2MDW3	Toxin-antitoxin system, antitoxin component, Xre domain protein	NA
UHGV-0173254_23	eggNOG-mapper	1410625.JHWK01000002_gene45	Helix-turn-helix XRE-family like proteins	NA
UHGV-0173254_23	COG	COG2944	DNA-binding transcriptional regulator YiaG, XRE-type HTH domain	NA
UHGV-0173254_23	Structural annotation	PF13560, NF041951, COG1396	NA	NA
UHGV-0173254_25	UniRef90	UniRef90_A0A395X7A4	CTP synthase	NA
UHGV-0173254_25	eggNOG-mapper	476272.RUMHYD_01766	NA	NA
UHGV-0173254_26	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0173254_26	UniRef90	UniRef90_UPI000E4E3D5A	phage capsid protein	NA
UHGV-0173254_26	eggNOG-mapper	1160721.RBI_II00541	NA	NA
UHGV-0173254_26	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0173254_26	COG	COG2369	NA	NA
UHGV-0173254_26	Structural annotation	PF06152	NA	NA
UHGV-0173254_27	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0173254_27	UniRef90	UniRef90_UPI001C0ECC47	minor capsid protein	NA
UHGV-0173254_27	eggNOG-mapper	645991.Sgly_0344	NA	NA
UHGV-0173254_27	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0173254_27	Structural annotation	PF11114	NA	NA
UHGV-0173254_28	PHROG	phrog_374	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0173254_28	UniRef90	UniRef90_C9KJA8	dUTP diphosphatase	NA
UHGV-0173254_28	eggNOG-mapper	632245.CLP_1610	NA	NA
UHGV-0173254_28	Structural annotation	PF17375	NA	NA
UHGV-0173254_29	PHROG	phrog_533	portal protein	head and packaging
UHGV-0173254_29	UniRef90	UniRef90_A0A1C6CDM8	Phage portal protein, putative, A118 family	NA
UHGV-0173254_29	eggNOG-mapper	33035.JPJF01000106_gene3135	phage minor capsid protein	NA
UHGV-0173254_29	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0173254_31	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0173254_31	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0173254_31	UniRef90	UniRef90_UPI001C0ECFC2	PBSX family phage terminase large subunit	NA
UHGV-0173254_31	eggNOG-mapper	33035.JPJF01000106_gene3136	Terminase small subunit	NA
UHGV-0173254_31	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0173254_31	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0173254_31	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0173254_31	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0173254_31	COG	COG1783	Phage terminase large subunit	NA
UHGV-0173254_31	Structural annotation	PF04466, PF17288, PF03592, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0173254_32	PHROG	phrog_33130	NA	unknown function
UHGV-0173254_32	UniRef90	UniRef90_A0A3B9CD52	S1-like domain-containing protein	NA
UHGV-0173254_32	Structural annotation	PF10922, MF_00839	NA	NA
UHGV-0173254_33	eggNOG-mapper	476272.RUMHYD_01751	NA	NA
UHGV-0173254_37	UniRef90	UniRef90_UPI0018976D2E	NA	NA
UHGV-0173254_40	eggNOG-mapper	397290.C810_01505	NA	NA
UHGV-0173254_41	Structural annotation	COG4446	NA	NA
UHGV-0173254_43	UniRef90	UniRef90_A0A1C5RYU8	Restriction alleviation protein, Lar family	NA
UHGV-0173254_43	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-0173254_43	Structural annotation	PF14354	NA	NA
UHGV-0173254_44	PHROG	phrog_38832	NA	unknown function
UHGV-0173254_44	eggNOG-mapper	1235799.C818_02666	NA	NA
UHGV-0173254_44	Structural annotation	PF11302	NA	NA