UHGV-0173287

Genome information

Genome length 23,206 bps

CDS count 35

Completeness 57.18% (medium-quality)

geNomad score 0.9799

Prediction confidence Confident

Genome information
Genome ID	UHGV-0173287
vOTU ID	vOTU-028665
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_580490
BioSample	NA
Country	Madagascar
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	57.18% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	15
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9799
Virus hallmark genes (geNomad)	6
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	52.69
Jumbo phage	No

Genome content
Genome length	23,206 bps
GC content	45.40%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	35
CDS density	92.05%
Average CDS length	613.03 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0173287_1	PHROG	phrog_115	minor head protein	head and packaging
UHGV-0173287_1	UniRef90	UniRef90_A0A0G8G8N0	NA	NA
UHGV-0173287_1	eggNOG-mapper	349123.Lreu23DRAFT_4211	Phage Mu protein F like protein	NA
UHGV-0173287_1	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0173287_1	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-0173287_1	COG	COG2369	NA	NA
UHGV-0173287_2	PHROG	phrog_64	portal protein	head and packaging
UHGV-0173287_2	UniRef90	UniRef90_A0A0G8GAU0	Phage portal protein	NA
UHGV-0173287_2	eggNOG-mapper	349123.Lreu23DRAFT_4212	Phage portal protein	NA
UHGV-0173287_2	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0173287_2	NCBIFam	TIGR01538.1	phage portal protein	NA
UHGV-0173287_2	Structural annotation	PF05133, MF_04120, TIGR01538, COG5518	NA	NA
UHGV-0173287_3	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0173287_3	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0173287_3	UniRef90	UniRef90_A0A0G8G8N2	NA	NA
UHGV-0173287_3	eggNOG-mapper	1423724.BAMM01000012_gene1368	Phage terminase, large subunit	NA
UHGV-0173287_3	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0173287_3	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0173287_3	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0173287_3	COG	COG1783	Phage terminase large subunit	NA
UHGV-0173287_3	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0173287_4	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0173287_4	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-0173287_4	UniRef90	UniRef90_A0A0G8G9B1	Phage terminase	NA
UHGV-0173287_4	eggNOG-mapper	1314.HKU360_01494	Terminase, small subunit	NA
UHGV-0173287_4	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0173287_4	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0173287_4	Structural annotation	PF03592, COG3728	NA	NA
UHGV-0173287_5	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0173287_5	UniRef90	UniRef90_E7FPA8	Sigma70_r4 domain-containing protein	NA
UHGV-0173287_5	eggNOG-mapper	1069534.LRC_07220	NA	NA
UHGV-0173287_5	Structural annotation	PF07374, MF_00674, NF001066, COG2739	NA	NA
UHGV-0173287_6	UniRef90	UniRef90_A0A0G8G8R8	Putative conjugation-related ATPase	NA
UHGV-0173287_7	PHROG	phrog_236	nucleotide kinase	other
UHGV-0173287_7	UniRef90	UniRef90_UPI001F43C10E	NA	NA
UHGV-0173287_7	eggNOG-mapper	1302286.BAOT01000008_gene594	NA	NA
UHGV-0173287_7	Pfam	PF11753	NA	DUF3310
UHGV-0173287_7	Structural annotation	PF11753	NA	NA
UHGV-0173287_8	PHROG	phrog_1071	DNA methyltransferase	other
UHGV-0173287_8	UniRef90	UniRef90_A0A837ITY3	NA	NA
UHGV-0173287_8	eggNOG-mapper	525309.HMPREF0494_1798	site-specific DNA-methyltransferase (adenine-specific) activity	NA
UHGV-0173287_8	Pfam	PF02384	N-6 DNA Methylase	N6_Mtase
UHGV-0173287_8	COG	COG0286	Type I restriction-modification system, DNA methylase subunit	NA
UHGV-0173287_8	Structural annotation	PF01596, TIGR02469, COG3963	NA	NA
UHGV-0173287_9	KOfam	K14059	int; integrase	NA
UHGV-0173287_9	PHROG	phrog_1	integrase	integration and excision
UHGV-0173287_9	UniRef90	UniRef90_F7R305	Phage integrase	NA
UHGV-0173287_9	eggNOG-mapper	575605.ACQN01000001_gene345	Belongs to the 'phage' integrase family	NA
UHGV-0173287_9	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0173287_9	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0173287_9	Structural annotation	PF00589, PF14659, MF_02055, NF001399, COG4974	NA	NA
UHGV-0173287_10	Structural annotation	COG2771	NA	NA
UHGV-0173287_11	PHROG	phrog_190	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0173287_11	UniRef90	UniRef90_A0A848CEG1	NA	NA
UHGV-0173287_11	eggNOG-mapper	1069534.LRC_07200	NA	NA
UHGV-0173287_11	Pfam	PF06356	NA	DUF1064
UHGV-0173287_11	Structural annotation	PF06356, NF033179	NA	NA
UHGV-0173287_15	PHROG	phrog_32046	NA	unknown function
UHGV-0173287_16	PHROG	phrog_3745	NA	unknown function
UHGV-0173287_16	eggNOG-mapper	908339.HMPREF9265_1627	NA	NA
UHGV-0173287_17	KOfam	K07505	repA; regulatory protein RepA	NA
UHGV-0173287_17	PHROG	phrog_2597	DNA primase	DNA, RNA and nucleotide metabolism
UHGV-0173287_17	UniRef90	UniRef90_E7FPB2	Primase C terminal 2 (PriCT-2)	NA
UHGV-0173287_17	eggNOG-mapper	1158614.I592_02280	Primase C terminal 2 (PriCT-2)	NA
UHGV-0173287_17	Pfam	PF08707	Primase C terminal 2 (PriCT-2)	PriCT_2
UHGV-0173287_17	Pfam	PF13481	AAA domain	AAA_25
UHGV-0173287_17	COG	COG3598	RecA-family ATPase	NA
UHGV-0173287_17	Structural annotation	PF13481, PF16793, PF08220, MF_00350, MF_00700, NF006606, NF001641, COG3598, COG3285	NA	NA
UHGV-0173287_18	KOfam	K17677	IRC3; ATP-dependent helicase IRC3 [EC:5.6.2.-]	NA
UHGV-0173287_18	PHROG	phrog_16	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0173287_18	UniRef90	UniRef90_A0A097BY72	DEAD/DEAH box helicase	NA
UHGV-0173287_18	eggNOG-mapper	1486428.A0A097BY72_9CAUD	helicase activity	NA
UHGV-0173287_18	PADLOC	mREase_IV_00005	Type IV methyl-directed restriction enzyme	RM
UHGV-0173287_18	Pfam	PF04851	Type III restriction enzyme, res subunit	ResIII
UHGV-0173287_18	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-0173287_18	Structural annotation	PF04851, PF16203, MF_01489, NF008521, COG1061	NA	NA
UHGV-0173287_19	PHROG	phrog_2698	NA	unknown function
UHGV-0173287_19	UniRef90	UniRef90_A0A0R2KFV1	NA	NA
UHGV-0173287_19	eggNOG-mapper	1158614.I592_02293	NA	NA
UHGV-0173287_19	Structural annotation	PF17426, NF005674	NA	NA
UHGV-0173287_20	PHROG	phrog_36766	NA	unknown function
UHGV-0173287_20	AcrCatalog	cluster_108372	NA	NA
UHGV-0173287_21	PHROG	phrog_124	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0173287_21	UniRef90	UniRef90_M5J801	NA	NA
UHGV-0173287_21	eggNOG-mapper	1235801.C822_00118	AAA domain	NA
UHGV-0173287_21	Pfam	PF13479	AAA domain	AAA_24
UHGV-0173287_21	Structural annotation	PF13479, MF_00350, TIGR01618, COG0468	NA	NA
UHGV-0173287_22	PHROG	phrog_674	NA	unknown function
UHGV-0173287_22	UniRef90	UniRef90_A0A8B2Z4L0	NA	NA
UHGV-0173287_22	eggNOG-mapper	1136177.KCA1_1066	NA	NA
UHGV-0173287_22	Pfam	PF07083	NA	DUF1351
UHGV-0173287_22	Structural annotation	PF07083	NA	NA
UHGV-0173287_24	PHROG	phrog_23441	NA	unknown function
UHGV-0173287_27	PHROG	phrog_823	NA	unknown function
UHGV-0173287_27	UniRef90	UniRef90_UPI00062CB855	NA	NA
UHGV-0173287_27	eggNOG-mapper	1069534.LRC_07140	NA	NA
UHGV-0173287_27	Pfam	PF05595	NA	DUF771
UHGV-0173287_27	Structural annotation	PF05595, COG4707	NA	NA
UHGV-0173287_28	AcrCatalog	cluster_73533	NA	NA
UHGV-0173287_29	KOfam	K18830	pezA; HTH-type transcriptional regulator / antitoxin PezA	NA
UHGV-0173287_29	PHROG	phrog_3	transcriptional repressor	transcription regulation
UHGV-0173287_29	UniRef90	UniRef90_A0A837DTJ7	HTH cro/C1-type domain-containing protein	NA
UHGV-0173287_29	eggNOG-mapper	936375.HMPREF1152_1045	Helix-turn-helix XRE-family like proteins	NA
UHGV-0173287_29	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0173287_29	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0173287_29	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0173287_30	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-0173287_30	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0173287_30	UniRef90	UniRef90_A0A837DVZ7	Peptidase s24-like protein	NA
UHGV-0173287_30	eggNOG-mapper	1133569.AHYZ01000138_gene1619	Peptidase S24-like	NA
UHGV-0173287_30	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0173287_30	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-0173287_30	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0173287_30	Structural annotation	PF00717, PF01381, MF_00015, TIGR00498, COG2932	NA	NA
UHGV-0173287_31	PHROG	phrog_806	NA	unknown function
UHGV-0173287_31	UniRef90	UniRef90_A0A0G8G8R7	Putative lipoprotein	NA
UHGV-0173287_31	eggNOG-mapper	1300150.EMQU_2343	NA	NA
UHGV-0173287_31	Pfam	PF11611	NA	DUF4352
UHGV-0173287_31	Structural annotation	PF11611, MF_00791, NF003967, COG2967	NA	NA
UHGV-0173287_32	KOfam	K14059	int; integrase	NA
UHGV-0173287_32	PHROG	phrog_1	integrase	integration and excision
UHGV-0173287_32	UniRef90	UniRef90_A0A837DVP0	Integrase	NA
UHGV-0173287_32	eggNOG-mapper	1605.Lani381_0421	Belongs to the 'phage' integrase family	NA
UHGV-0173287_32	Pfam	PF14657	Arm DNA-binding domain	Arm-DNA-bind_4
UHGV-0173287_32	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0173287_32	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0173287_32	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0173287_32	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-0173287_34	PHROG	phrog_6160	NA	unknown function
UHGV-0173287_34	eggNOG-mapper	397291.C804_04947	NA	NA