UHGV-0173344

Genome information

Genome length 14,224 bps

CDS count 19

Completeness 99.90% (high-quality)

geNomad score 0.9589

Prediction confidence Confident

Genome information
Genome ID	UHGV-0173344
vOTU ID	vOTU-010892
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_568590
BioSample	NA
Country	Spain
Virus prediction confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	6
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9589
Virus hallmark genes (geNomad)	6
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	7.93
Jumbo phage	No

Genome content
Genome length	14,224 bps
GC content	28.14%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	19
CDS density	76.72%
Average CDS length	576.63 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0173344_1	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0173344_1	UniRef90	UniRef90_UPI001C8CA5DE	terminase large subunit	NA
UHGV-0173344_1	eggNOG-mapper	1089548.KI783301_gene3220	Terminase	NA
UHGV-0173344_1	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0173344_1	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0173344_1	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0173344_1	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-0173344_2	PHROG	phrog_1066	NA	unknown function
UHGV-0173344_2	eggNOG-mapper	1089548.KI783301_gene3221	NA	NA
UHGV-0173344_2	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0173344_3	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0173344_3	UniRef90	UniRef90_UPI001C8BE616	HNH endonuclease	NA
UHGV-0173344_3	eggNOG-mapper	1089548.KI783301_gene3222	HNH endonuclease	NA
UHGV-0173344_3	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0173344_3	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0173344_4	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-0173344_4	PHROG	phrog_216	integrase	integration and excision
UHGV-0173344_4	UniRef90	UniRef90_UPI001C8BD5A8	tyrosine-type recombinase/integrase	NA
UHGV-0173344_4	eggNOG-mapper	500633.CLOHIR_00361	Site-specific recombinase, phage integrase family	NA
UHGV-0173344_4	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0173344_4	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0173344_4	Structural annotation	PF00589, MF_02055, NF040815, COG4973	NA	NA
UHGV-0173344_5	PHROG	phrog_3548	NA	unknown function
UHGV-0173344_5	UniRef90	UniRef90_R5Y3G0	BRCT domain-containing protein	NA
UHGV-0173344_6	UniRef90	UniRef90_UPI001C8CBC3E	head-tail connector protein	NA
UHGV-0173344_6	eggNOG-mapper	1089548.KI783301_gene3223	NA	NA
UHGV-0173344_6	AcrCatalog	cluster_178303	NA	NA
UHGV-0173344_6	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0173344_6	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-0173344_6	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0173344_7	PHROG	phrog_10	major head protein	head and packaging
UHGV-0173344_7	UniRef90	UniRef90_UPI001C8BD699	phage major capsid protein	NA
UHGV-0173344_7	eggNOG-mapper	1089548.KI783301_gene3224	Phage capsid family	NA
UHGV-0173344_7	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0173344_7	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0173344_7	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0173344_7	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0173344_8	KOfam	K06904	NA	NA
UHGV-0173344_8	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-0173344_8	UniRef90	UniRef90_UPI001C8C89B9	HK97 family phage prohead protease	NA
UHGV-0173344_8	eggNOG-mapper	1089548.KI783301_gene3225	Caudovirus prohead serine protease	NA
UHGV-0173344_8	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0173344_8	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-0173344_8	COG	COG3740	Phage head maturation protease	NA
UHGV-0173344_8	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0173344_9	PHROG	phrog_12	portal protein	head and packaging
UHGV-0173344_9	UniRef90	UniRef90_UPI001C8BC6B9	phage portal protein	NA
UHGV-0173344_9	eggNOG-mapper	1089548.KI783301_gene3227	Phage portal protein	NA
UHGV-0173344_9	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0173344_9	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0173344_9	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0173344_11	eggNOG-mapper	545697.HMPREF0216_03164	NA	NA
UHGV-0173344_12	Pfam	PF08681	NA	DUF1778
UHGV-0173344_14	UniRef90	UniRef90_A0A174IEH9	Helix-turn-helix domain of resolvase	NA
UHGV-0173344_14	eggNOG-mapper	1414720.CBYM010000071_gene3375	Helix-turn-helix domain of resolvase	NA
UHGV-0173344_14	Pfam	PF13936	Helix-turn-helix domain	HTH_38
UHGV-0173344_15	PHROG	phrog_2727	NA	unknown function
UHGV-0173344_16	Structural annotation	PF02796	NA	NA
UHGV-0173344_17	UniRef90	UniRef90_A0A645DKJ5	PBECR3 domain-containing protein	NA
UHGV-0173344_17	eggNOG-mapper	665952.HMPREF1015_01935	NA	NA
UHGV-0173344_17	Pfam	PF18812	phage-Barnase-EndoU-ColicinE5/D-RelE like nuclease3	PBECR3
UHGV-0173344_17	Structural annotation	PF18812, COG2929	NA	NA
UHGV-0173344_18	PHROG	phrog_9432	replication protein	DNA, RNA and nucleotide metabolism
UHGV-0173344_18	UniRef90	UniRef90_C6PZX7	Replication protein	NA
UHGV-0173344_18	eggNOG-mapper	536227.CcarbDRAFT_4344	sequence-specific DNA binding	NA
UHGV-0173344_18	COG	COG2522	Predicted transcriptional regulator, contains XRE-type HTH domain	NA
UHGV-0173344_18	Structural annotation	PF13384, MF_00700, TIGR00335, COG1467	NA	NA
UHGV-0173344_19	UniRef90	UniRef90_A0A4Z0Y2W9	Phage terminase	NA
UHGV-0173344_19	eggNOG-mapper	1089548.KI783301_gene3220	Terminase	NA
UHGV-0173344_19	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA