UHGV-0173368

Genome information

Genome length 32,226 bps

CDS count 48

Completeness 100.00% (complete)

geNomad score 0.9802

Prediction confidence Confident

Genome information
Genome ID	UHGV-0173368
vOTU ID	vOTU-046488
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_578393
BioSample	NA
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	26
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9802
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	62.62
Jumbo phage	No

Genome content
Genome length	32,226 bps
GC content	38.91%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	48
CDS density	93.33%
Average CDS length	629.88 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0173368_1	PHROG	phrog_12	portal protein	head and packaging
UHGV-0173368_1	UniRef90	UniRef90_A0A0A0YSD7	Portal protein	NA
UHGV-0173368_1	eggNOG-mapper	1566990.A0A0A0YSD7_9CAUD	Phage portal protein	NA
UHGV-0173368_2	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0173368_2	UniRef90	UniRef90_A0A7T2ZXC7	Terminase large subunit	NA
UHGV-0173368_2	eggNOG-mapper	1297534.CAUJ01000005_gene182	Terminase	NA
UHGV-0173368_2	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0173368_2	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0173368_2	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0173368_2	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0173368_3	PHROG	phrog_3567	NA	unknown function
UHGV-0173368_3	UniRef90	UniRef90_A0A7X1BZ96	MerR family transcriptional regulator	NA
UHGV-0173368_4	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0173368_4	UniRef90	UniRef90_B1I799	HNH endonuclease domain protein	NA
UHGV-0173368_4	eggNOG-mapper	1566990.A0A0A0YV65_9CAUD	HNH endonuclease	NA
UHGV-0173368_4	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0173368_5	PHROG	phrog_3606	NA	unknown function
UHGV-0173368_6	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-0173368_6	PHROG	phrog_216	integrase	integration and excision
UHGV-0173368_6	UniRef90	UniRef90_A0A0A0YRV7	Site-specific recombinase	NA
UHGV-0173368_6	eggNOG-mapper	1297534.CAUJ01000005_gene184	Integrase	NA
UHGV-0173368_6	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0173368_6	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0173368_6	Structural annotation	PF00589, MF_02055, NF040815, COG4973	NA	NA
UHGV-0173368_7	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0173368_7	UniRef90	UniRef90_A0A116QW24	Bacteriophage transcriptional activator	NA
UHGV-0173368_7	eggNOG-mapper	1123315.AUIP01000003_gene229	Transcriptional regulator, RinA family	NA
UHGV-0173368_7	Structural annotation	PF05263, TIGR01636	NA	NA
UHGV-0173368_8	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-0173368_8	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0173368_8	UniRef90	UniRef90_A0A0A0YQT1	Cro repressor	NA
UHGV-0173368_8	eggNOG-mapper	1280.SAXN108_1969	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0173368_8	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0173368_8	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0173368_8	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0173368_9	PHROG	phrog_7626	NA	unknown function
UHGV-0173368_10	PHROG	phrog_9055	NA	unknown function
UHGV-0173368_10	UniRef90	UniRef90_UPI001BAFF8CD	NA	NA
UHGV-0173368_10	eggNOG-mapper	365659.smi_0433	NA	NA
UHGV-0173368_10	Pfam	PF07116	NA	DUF1372
UHGV-0173368_10	Structural annotation	PF07116, COG3585	NA	NA
UHGV-0173368_11	PHROG	phrog_2118	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0173368_11	UniRef90	UniRef90_A0A1X1IKY2	HNH endonuclease	NA
UHGV-0173368_11	eggNOG-mapper	157924.Q7Y4J8_9CAUD	HNH endonuclease	NA
UHGV-0173368_11	Pfam	PF14279	HNH endonuclease	HNH_5
UHGV-0173368_11	Structural annotation	TIGR02646, COG1403	NA	NA
UHGV-0173368_12	PHROG	phrog_20205	NA	unknown function
UHGV-0173368_13	UniRef90	UniRef90_A0A428HZ52	Putative nickel-responsive regulator	NA
UHGV-0173368_13	Structural annotation	PF07878, NF010302, COG3609	NA	NA
UHGV-0173368_14	PHROG	phrog_121	NA	unknown function
UHGV-0173368_14	UniRef90	UniRef90_UPI00189A9A6A	NA	NA
UHGV-0173368_14	eggNOG-mapper	12402.Q708P7_9CAUD	NA	NA
UHGV-0173368_14	Pfam	PF07852	NA	DUF1642
UHGV-0173368_14	Structural annotation	PF07852	NA	NA
UHGV-0173368_15	PHROG	phrog_834	NA	unknown function
UHGV-0173368_15	UniRef90	UniRef90_Q7Y4K0	Gp24	NA
UHGV-0173368_17	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0173368_17	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0173368_17	UniRef90	UniRef90_A0A3P1VHI6	Single-stranded DNA-binding protein	NA
UHGV-0173368_17	eggNOG-mapper	644007.C5J996_9CAUD	Single-strand binding protein family	NA
UHGV-0173368_17	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0173368_17	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0173368_17	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0173368_17	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-0173368_18	PHROG	phrog_1174	NA	unknown function
UHGV-0173368_18	UniRef90	UniRef90_A0A654XP97	NA	NA
UHGV-0173368_18	eggNOG-mapper	768726.HMPREF9178_1079	NA	NA
UHGV-0173368_19	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-0173368_19	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0173368_19	UniRef90	UniRef90_E6KJ69	IstB_IS21 domain-containing protein	NA
UHGV-0173368_19	eggNOG-mapper	888049.HMPREF8578_0284	DNA-dependent DNA replication	NA
UHGV-0173368_19	Pfam	PF01695	IstB-like ATP binding protein	IstB_IS21
UHGV-0173368_19	COG	COG1484	DNA replication protein DnaC	NA
UHGV-0173368_19	Structural annotation	PF01695, MF_00377, NF005931, COG1484	NA	NA
UHGV-0173368_20	PHROG	phrog_428	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0173368_20	UniRef90	UniRef90_UPI0019126D17	conserved phage C-terminal domain-containing protein	NA
UHGV-0173368_20	eggNOG-mapper	888049.HMPREF8578_0285	Phage replisome organizer	NA
UHGV-0173368_20	Pfam	PF06970	Replication initiator protein A (RepA) N-terminus	RepA_N
UHGV-0173368_20	Pfam	PF09524	Conserved phage C-terminus (Phg_2220_C)	Phg_2220_C
UHGV-0173368_20	NCBIFam	TIGR02220.1	phage conserved hypothetical protein, C-terminal domain	NA
UHGV-0173368_20	Structural annotation	PF09524, PF06970, TIGR02220, NF040642, COG5625	NA	NA
UHGV-0173368_21	PHROG	phrog_314	homing endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0173368_21	UniRef90	UniRef90_E6KJ71	GIY-YIG catalytic domain protein	NA
UHGV-0173368_21	eggNOG-mapper	888049.HMPREF8578_0286	GIY-YIG catalytic domain	NA
UHGV-0173368_21	Pfam	PF01541	GIY-YIG catalytic domain	GIY-YIG
UHGV-0173368_22	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-0173368_22	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0173368_22	UniRef90	UniRef90_A0A1F0NIR3	Replicative DNA helicase	NA
UHGV-0173368_22	eggNOG-mapper	888049.HMPREF8578_0287	Participates in initiation and elongation during chromosome replication	NA
UHGV-0173368_22	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-0173368_22	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0173368_22	NCBIFam	NF004384.0	replicative DNA helicase	NA
UHGV-0173368_22	COG	COG0305	Replicative DNA helicase	NA
UHGV-0173368_22	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-0173368_23	PHROG	phrog_7483	NA	unknown function
UHGV-0173368_23	UniRef90	UniRef90_A0A0X8UVS5	NA	NA
UHGV-0173368_24	PHROG	phrog_668	HTH DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0173368_24	UniRef90	UniRef90_A0A098ANK2	DNA-binding protein	NA
UHGV-0173368_24	Structural annotation	PF12728, NF033499, COG3311	NA	NA
UHGV-0173368_25	PHROG	phrog_2113	NA	unknown function
UHGV-0173368_25	UniRef90	UniRef90_A0A822VXP8	Putative DNA-binding phage protein	NA
UHGV-0173368_25	eggNOG-mapper	1123315.AUIP01000028_gene271	NA	NA
UHGV-0173368_25	Structural annotation	PF11994, MF_01177, TIGR02944, COG1959	NA	NA
UHGV-0173368_26	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0173368_26	UniRef90	UniRef90_UPI000F65A7B8	helix-turn-helix domain-containing protein	NA
UHGV-0173368_26	eggNOG-mapper	1201292.DR75_1541	Helix-turn-helix XRE-family like proteins	NA
UHGV-0173368_26	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0173368_26	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0173368_26	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0173368_27	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0173368_27	UniRef90	UniRef90_A0A081R3H5	Helix-turn-helix family protein	NA
UHGV-0173368_27	eggNOG-mapper	1282664.H354_07515	sequence-specific DNA binding	NA
UHGV-0173368_27	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0173368_27	Structural annotation	PF12844, NF041951, COG3655	NA	NA
UHGV-0173368_28	PHROG	phrog_87	metallo-protease	other
UHGV-0173368_28	UniRef90	UniRef90_A0A0E9GZ75	NA	NA
UHGV-0173368_28	eggNOG-mapper	1035189.HMPREF9954_1970	IrrE N-terminal-like domain	NA
UHGV-0173368_28	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0173368_28	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0173368_28	Structural annotation	PF13058, MF_00745, NF003339, COG2856	NA	NA
UHGV-0173368_29	PHROG	phrog_4980	superinfection exclusion	moron, auxiliary metabolic gene and host takeover
UHGV-0173368_29	UniRef90	UniRef90_A0A1S1DM90	Lipoprotein_Ltp domain-containing protein	NA
UHGV-0173368_29	eggNOG-mapper	1567453.A0A0A1ERB0_9CAUD	Host cell surface-exposed lipoprotein	NA
UHGV-0173368_29	Pfam	PF07553	Host cell surface-exposed lipoprotein	Lipoprotein_Ltp
UHGV-0173368_30	KOfam	K14059	int; integrase	NA
UHGV-0173368_30	PHROG	phrog_34557	integrase	integration and excision
UHGV-0173368_30	UniRef90	UniRef90_A0A1S5S9I3	Integrase	NA
UHGV-0173368_30	eggNOG-mapper	888049.HMPREF8578_0663	Phage integrase, N-terminal SAM-like domain	NA
UHGV-0173368_30	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0173368_30	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0173368_30	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0173368_30	Structural annotation	PF00589, PF14659, MF_01808, NF007246, COG4973	NA	NA
UHGV-0173368_31	AcrCatalog	cluster_156468	NA	NA
UHGV-0173368_32	PHROG	phrog_1529	NA	unknown function
UHGV-0173368_32	eggNOG-mapper	638301.HMPREF0444_1489	NA	NA
UHGV-0173368_32	Structural annotation	PF01381, TIGR02607, COG3655	NA	NA
UHGV-0173368_33	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0173368_33	PHROG	phrog_1110	endolysin	lysis
UHGV-0173368_33	UniRef90	UniRef90_X8KD37	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0173368_33	eggNOG-mapper	1282664.H354_06746	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0173368_33	Pfam	PF01473	Putative cell wall binding repeat	Choline_bind_1
UHGV-0173368_33	Pfam	PF19127	Choline-binding repeat	Choline_bind_3
UHGV-0173368_33	COG	COG5263	Glucan-binding domain (YG repeat)	NA
UHGV-0173368_33	Structural annotation	PF19127, PF01510, TIGR04035, COG5263	NA	NA
UHGV-0173368_34	PHROG	phrog_199	holin	lysis
UHGV-0173368_34	UniRef90	UniRef90_A0A1S5SD95	Holin 1	NA
UHGV-0173368_34	eggNOG-mapper	413066.A1EAB5_9CAUD	Pfam:Phage_holin_4_1	NA
UHGV-0173368_34	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0173368_34	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0173368_34	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0173368_35	PHROG	phrog_1554	NA	unknown function
UHGV-0173368_35	UniRef90	UniRef90_A0A139Q9H9	NA	NA
UHGV-0173368_35	eggNOG-mapper	1035189.HMPREF9954_1920	NA	NA
UHGV-0173368_35	Structural annotation	PF07104	NA	NA
UHGV-0173368_36	PHROG	phrog_1137	NA	unknown function
UHGV-0173368_36	UniRef90	UniRef90_A0A1X0WPX7	Dihydrodipicolinate reductase	NA
UHGV-0173368_37	PHROG	phrog_1210	PblB-type receptor binding	other
UHGV-0173368_37	UniRef90	UniRef90_A0A1X1L1M9	Peptidase S74 domain-containing protein	NA
UHGV-0173368_37	eggNOG-mapper	1297534.CAUJ01000005_gene170	Phage minor structural protein	NA
UHGV-0173368_37	Pfam	PF18994	Prophage endopeptidase tail N-terminal domain	Prophage_tailD1
UHGV-0173368_37	Pfam	PF13884	Chaperone of endosialidase	Peptidase_S74
UHGV-0173368_37	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0173368_37	COG	COG1511	NA	NA
UHGV-0173368_37	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0173368_38	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0173368_38	UniRef90	UniRef90_A0A1F0TGE5	Phage tail protein	NA
UHGV-0173368_38	eggNOG-mapper	1297534.CAUJ01000005_gene171	NA	NA
UHGV-0173368_38	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-0173368_39	PHROG	phrog_15002	NA	unknown function
UHGV-0173368_39	UniRef90	UniRef90_B1I7B2	Prophage LambdaSa04, tail tape measure protein, family	NA
UHGV-0173368_39	eggNOG-mapper	1566990.A0A0A0YSE6_9CAUD	peptidoglycan catabolic process	NA
UHGV-0173368_39	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0173368_39	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0173368_39	Structural annotation	PF10145, MF_04138, TIGR01760, COG5280	NA	NA
UHGV-0173368_40	PHROG	phrog_3343	NA	unknown function
UHGV-0173368_41	PHROG	phrog_2634	major tail protein	tail
UHGV-0173368_41	UniRef90	UniRef90_A0A0A0YQP9	Major tail protein	NA
UHGV-0173368_41	Pfam	PF06488	Phage tail tube protein	L_lac_phage_MSP
UHGV-0173368_41	Structural annotation	PF06488, TIGR01603, COG5437	NA	NA
UHGV-0173368_42	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0173368_42	UniRef90	UniRef90_A0A0T8CJ85	Bacteriophage pi2 protein 37	NA
UHGV-0173368_42	eggNOG-mapper	272623.L58927	NA	NA
UHGV-0173368_42	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0173368_43	PHROG	phrog_3334	NA	unknown function
UHGV-0173368_44	PHROG	phrog_3332	head-tail adaptor	connector
UHGV-0173368_44	UniRef90	UniRef90_A0A0A0YRS5	Head-tail adapter protein	NA
UHGV-0173368_45	PHROG	phrog_3305	virion structural protein	head and packaging
UHGV-0173368_45	UniRef90	UniRef90_A0A3B8DLV7	Glycerate kinase	NA
UHGV-0173368_46	PHROG	phrog_10	major head protein	head and packaging
UHGV-0173368_46	UniRef90	UniRef90_A0A0A0YQP6	Capsid protein	NA
UHGV-0173368_46	eggNOG-mapper	1566990.A0A0A0YQP6_9CAUD	peptidase activity	NA
UHGV-0173368_46	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0173368_46	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0173368_47	KOfam	K06904	NA	NA
UHGV-0173368_47	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-0173368_47	UniRef90	UniRef90_A0A0A0YV29	Prohead maturation protease	NA
UHGV-0173368_47	eggNOG-mapper	1297534.CAUJ01000005_gene180	Phage prohead protease, HK97 family	NA
UHGV-0173368_47	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0173368_47	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-0173368_47	COG	COG3740	Phage head maturation protease	NA
UHGV-0173368_47	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0173368_48	PHROG	phrog_12	portal protein	head and packaging
UHGV-0173368_48	UniRef90	UniRef90_A0A6I3UZ56	Phage portal protein (Fragment)	NA
UHGV-0173368_48	eggNOG-mapper	1297534.CAUJ01000005_gene181	Portal protein	NA
UHGV-0173368_48	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0173368_48	COG	COG4695	Phage portal protein BeeE	NA