UHGV-0173448

Genome information

Genome length 24,686 bps

CDS count 35

Completeness 70.63% (medium-quality)

geNomad score 0.9758

Prediction confidence Confident

Genome information
Genome ID	UHGV-0173448
vOTU ID	vOTU-028678
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_584703
BioSample	NA
Country	Madagascar
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	70.63% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	15
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9758
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	50.85
Jumbo phage	No

Genome content
Genome length	24,686 bps
GC content	43.66%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	35
CDS density	92.34%
Average CDS length	654.43 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0173448_1	PHROG	phrog_2412	NA	unknown function
UHGV-0173448_1	UniRef90	UniRef90_UPI001C38E948	KGG domain-containing protein	NA
UHGV-0173448_1	eggNOG-mapper	1125712.HMPREF1316_1524	NA	NA
UHGV-0173448_2	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0173448_2	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0173448_2	UniRef90	UniRef90_R6DVT6	Phage terminase large subunit PBSX family	NA
UHGV-0173448_2	eggNOG-mapper	1120998.AUFC01000030_gene2231	Phage terminase, large subunit, PBSX family	NA
UHGV-0173448_2	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0173448_2	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0173448_2	COG	COG1783	Phage terminase large subunit	NA
UHGV-0173448_2	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0173448_3	PHROG	phrog_533	portal protein	head and packaging
UHGV-0173448_3	UniRef90	UniRef90_R6DKE2	Phage minor capsid protein	NA
UHGV-0173448_3	eggNOG-mapper	428127.EUBDOL_01228	phage minor capsid protein	NA
UHGV-0173448_3	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0173448_3	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0173448_4	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0173448_4	UniRef90	UniRef90_R5XZV2	Protein gp4	NA
UHGV-0173448_4	eggNOG-mapper	718252.FP2_06690	NA	NA
UHGV-0173448_4	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0173448_4	COG	COG2369	NA	NA
UHGV-0173448_4	Structural annotation	PF06152	NA	NA
UHGV-0173448_6	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0173448_6	UniRef90	UniRef90_R6DN20	Phage minor structural protein GP20	NA
UHGV-0173448_6	eggNOG-mapper	1118054.CAGW01000102_gene4698	Phage minor structural protein GP20	NA
UHGV-0173448_6	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0173448_6	Structural annotation	PF06810	NA	NA
UHGV-0173448_7	PHROG	phrog_422	major head protein	head and packaging
UHGV-0173448_7	UniRef90	UniRef90_UPI00148C9F04	N4-gp56 family major capsid protein	NA
UHGV-0173448_7	eggNOG-mapper	764291.STRUR_2102	NA	NA
UHGV-0173448_7	Structural annotation	PF19821, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0173448_8	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0173448_8	UniRef90	UniRef90_R6DKE0	Putative gp8	NA
UHGV-0173448_8	eggNOG-mapper	632245.CLP_1650	NA	NA
UHGV-0173448_9	PHROG	phrog_3366	NA	unknown function
UHGV-0173448_9	Pfam	PF20536	NA	DUF6751
UHGV-0173448_9	Structural annotation	PF20536, COG5614	NA	NA
UHGV-0173448_10	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0173448_10	UniRef90	UniRef90_UPI001F06267A	minor capsid protein	NA
UHGV-0173448_10	eggNOG-mapper	1120998.AUFC01000030_gene2239	Minor capsid protein	NA
UHGV-0173448_10	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0173448_10	Structural annotation	PF11114	NA	NA
UHGV-0173448_11	PHROG	phrog_3266	tail completion	connector
UHGV-0173448_11	UniRef90	UniRef90_A0A2N2DPR7	Chloramphenicol resistance protein	NA
UHGV-0173448_11	eggNOG-mapper	411470.RUMGNA_02223	NA	NA
UHGV-0173448_11	Structural annotation	PF12691	NA	NA
UHGV-0173448_12	PHROG	phrog_3099	NA	unknown function
UHGV-0173448_12	eggNOG-mapper	645991.Sgly_0346	NA	NA
UHGV-0173448_12	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0173448_13	Structural annotation	PF10666	NA	NA
UHGV-0173448_14	PHROG	phrog_706	NA	unknown function
UHGV-0173448_14	UniRef90	UniRef90_UPI00067E77F7	Gp15 family bacteriophage protein	NA
UHGV-0173448_14	eggNOG-mapper	469596.HMPREF9488_01327	Bacteriophage Gp15 protein	NA
UHGV-0173448_14	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0173448_14	Structural annotation	PF06854	NA	NA
UHGV-0173448_15	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0173448_15	eggNOG-mapper	1321778.HMPREF1982_02681	SLT domain	NA
UHGV-0173448_15	COG	COG1511	NA	NA
UHGV-0173448_16	PHROG	phrog_1194	NA	unknown function
UHGV-0173448_16	Structural annotation	PF20458, TIGR01633, COG4718	NA	NA
UHGV-0173448_17	PHROG	phrog_1980	tail fiber protein	tail
UHGV-0173448_17	eggNOG-mapper	1235793.C809_04661	NA	NA
UHGV-0173448_17	Pfam	PF13884	Chaperone of endosialidase	Peptidase_S74
UHGV-0173448_17	Structural annotation	PF14594, NF033848, COG3501	NA	NA
UHGV-0173448_18	KOfam	K24218	C1QTNF7; complement C1q and tumor necrosis factor-related protein 7	NA
UHGV-0173448_18	PHROG	phrog_5073	tail fiber protein	tail
UHGV-0173448_18	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-0173448_20	PHROG	phrog_1863	NA	unknown function
UHGV-0173448_20	eggNOG-mapper	693746.OBV_18260	NA	NA
UHGV-0173448_21	PHROG	phrog_962	holin	lysis
UHGV-0173448_21	UniRef90	UniRef90_UPI001655FC48	phage holin	NA
UHGV-0173448_21	eggNOG-mapper	887929.HMP0721_1251	Bacteriophage holin	NA
UHGV-0173448_21	Pfam	PF04531	Bacteriophage holin	Phage_holin_1
UHGV-0173448_21	NCBIFam	TIGR01598.1	phage holin	NA
UHGV-0173448_21	COG	COG5546	NA	NA
UHGV-0173448_21	Structural annotation	COG5546	NA	NA
UHGV-0173448_22	PHROG	phrog_8781	endolysin	lysis
UHGV-0173448_22	UniRef90	UniRef90_A0A3D2TQQ9	Peptidase C51 domain-containing protein	NA
UHGV-0173448_22	eggNOG-mapper	904314.SEVCU012_1218	CHAP domain	NA
UHGV-0173448_22	Pfam	PF05257	CHAP domain	CHAP
UHGV-0173448_22	COG	COG1388	LysM repeat	NA
UHGV-0173448_22	Structural annotation	PF06940, TIGR02594, COG3942	NA	NA
UHGV-0173448_25	PHROG	phrog_21718	NA	unknown function
UHGV-0173448_26	eggNOG-mapper	641112.ACOK01000103_gene525	NA	NA
UHGV-0173448_27	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0173448_29	KOfam	K14059	int; integrase	NA
UHGV-0173448_29	PHROG	phrog_1	integrase	integration and excision
UHGV-0173448_29	UniRef90	UniRef90_A0A1H8A220	Site-specific recombinase XerD	NA
UHGV-0173448_29	eggNOG-mapper	1203606.HMPREF1526_00215	Phage integrase family	NA
UHGV-0173448_29	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0173448_29	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0173448_29	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0173448_29	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-0173448_30	KOfam	K18830	pezA; HTH-type transcriptional regulator / antitoxin PezA	NA
UHGV-0173448_30	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0173448_30	UniRef90	UniRef90_UPI00067DD2DE	helix-turn-helix domain-containing protein	NA
UHGV-0173448_30	eggNOG-mapper	1125712.HMPREF1316_0480	sequence-specific DNA binding	NA
UHGV-0173448_30	Pfam	PF13560	Helix-turn-helix domain	HTH_31
UHGV-0173448_30	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0173448_33	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0173448_33	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0173448_33	UniRef90	UniRef90_A0A416JYN0	XRE family transcriptional regulator	NA
UHGV-0173448_33	eggNOG-mapper	706434.HMPREF9429_00594	Helix-turn-helix XRE-family like proteins	NA
UHGV-0173448_33	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0173448_33	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0173448_33	Structural annotation	PF13560, NF041951, COG3655	NA	NA
UHGV-0173448_34	UniRef90	UniRef90_A0A3B9SF96	HTH cro/C1-type domain-containing protein	NA
UHGV-0173448_34	Pfam	PF05339	NA	DUF739
UHGV-0173448_34	COG	COG3655	DNA-binding transcriptional regulator, XRE family	NA
UHGV-0173448_34	Structural annotation	PF05339, NF041951, COG3655	NA	NA