UHGV-0173471

Genome information

Genome length 38,511 bps

CDS count 62

Completeness 97.46% (high-quality)

geNomad score 0.9787

Prediction confidence Confident

Genome information
Genome ID	UHGV-0173471
vOTU ID	vOTU-010895
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_577900
BioSample	SAMN07501281
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	97.46% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	29
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9787
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	82.11
Jumbo phage	No

Genome content
Genome length	38,511 bps
GC content	34.98%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	62
CDS density	90.75%
Average CDS length	566.71 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0173471_1	PHROG	phrog_8929	NA	unknown function
UHGV-0173471_2	PHROG	phrog_8160	NA	unknown function
UHGV-0173471_3	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0173471_3	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0173471_3	UniRef90	UniRef90_A0A855P3E8	Single-stranded DNA-binding protein (Fragment)	NA
UHGV-0173471_3	eggNOG-mapper	1201292.DR75_1530	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-0173471_3	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0173471_3	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0173471_3	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0173471_3	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0173471_4	PHROG	phrog_28554	MazG-like pyrophosphatase	other
UHGV-0173471_4	UniRef90	UniRef90_UPI000330848A	MazG-like family protein	NA
UHGV-0173471_4	eggNOG-mapper	673832.D2IYU1_9CAUD	sequence-specific DNA binding	NA
UHGV-0173471_4	Pfam	PF03819	MazG nucleotide pyrophosphohydrolase domain	MazG
UHGV-0173471_4	Structural annotation	PF12643, MF_01020, NF001613, COG0140	NA	NA
UHGV-0173471_5	PHROG	phrog_154	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0173471_5	UniRef90	UniRef90_A0A7G8ZYV2	NA	NA
UHGV-0173471_5	eggNOG-mapper	1140001.I571_01721	NA	NA
UHGV-0173471_5	Structural annotation	PF17399	NA	NA
UHGV-0173471_6	PHROG	phrog_8489	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0173471_6	UniRef90	UniRef90_R3J5J3	Phage replication initiation protein	NA
UHGV-0173471_6	eggNOG-mapper	1201292.DR75_1531	Helix-turn-helix domain	NA
UHGV-0173471_6	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0173471_6	Structural annotation	PF09524, PF09681, TIGR02220, TIGR01714	NA	NA
UHGV-0173471_7	PHROG	phrog_398	NA	unknown function
UHGV-0173471_7	UniRef90	UniRef90_UPI000CF11369	putative HNHc nuclease	NA
UHGV-0173471_7	eggNOG-mapper	1201292.DR75_1532	Putative HNHc nuclease	NA
UHGV-0173471_7	Pfam	PF16784	Putative HNHc nuclease	HNHc_6
UHGV-0173471_7	Structural annotation	PF16784	NA	NA
UHGV-0173471_8	PHROG	phrog_659	Sak-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0173471_8	UniRef90	UniRef90_A0A8I1FCV2	NA	NA
UHGV-0173471_8	eggNOG-mapper	565664.EFXG_02873	NA	NA
UHGV-0173471_8	Pfam	PF06378	NA	DUF1071
UHGV-0173471_9	PHROG	phrog_38186	NA	unknown function
UHGV-0173471_10	PHROG	phrog_26542	NA	unknown function
UHGV-0173471_11	PHROG	phrog_1422	NA	unknown function
UHGV-0173471_11	UniRef90	UniRef90_A0A828LU42	NA	NA
UHGV-0173471_11	eggNOG-mapper	220668.lp_2443	NA	NA
UHGV-0173471_11	Pfam	PF07411	NA	DUF1508
UHGV-0173471_11	COG	COG3422	NA	NA
UHGV-0173471_11	Structural annotation	PF07411, NF041908, COG3422	NA	NA
UHGV-0173471_13	PHROG	phrog_1654	NA	unknown function
UHGV-0173471_14	PHROG	phrog_1655	NA	unknown function
UHGV-0173471_14	eggNOG-mapper	1300150.EMQU_2298	NA	NA
UHGV-0173471_15	PHROG	phrog_373	anti-repressor	transcription regulation
UHGV-0173471_15	UniRef90	UniRef90_V7ZLA0	Antirepressor	NA
UHGV-0173471_15	eggNOG-mapper	1201292.DR75_1539	ORF6C domain	NA
UHGV-0173471_15	Pfam	PF09669	Phage regulatory protein Rha (Phage_pRha)	Phage_pRha
UHGV-0173471_15	Pfam	PF10552	ORF6C domain	ORF6C
UHGV-0173471_15	NCBIFam	TIGR02681.1	phage regulatory protein, Rha family	NA
UHGV-0173471_15	COG	COG3646	Phage regulatory protein Rha	NA
UHGV-0173471_15	Structural annotation	PF10552, PF09669, TIGR02681, COG3646	NA	NA
UHGV-0173471_16	PHROG	phrog_25665	excisionase	integration and excision
UHGV-0173471_16	UniRef90	UniRef90_A0A291DKS0	Excisionase	NA
UHGV-0173471_16	eggNOG-mapper	1158614.I592_02358	Helix-turn-helix domain	NA
UHGV-0173471_17	PHROG	phrog_1337	DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0173471_17	UniRef90	UniRef90_A0A7Z1Y8L0	XRE family transcriptional regulator	NA
UHGV-0173471_17	eggNOG-mapper	226185.EF_2039	NA	NA
UHGV-0173471_17	Structural annotation	PF21291, TIGR04111, COG3655	NA	NA
UHGV-0173471_18	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-0173471_18	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0173471_18	UniRef90	UniRef90_A0A640NQ17	Transcriptional regulator	NA
UHGV-0173471_18	eggNOG-mapper	1201292.DR75_1672	Helix-turn-helix XRE-family like proteins	NA
UHGV-0173471_18	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0173471_18	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0173471_18	Structural annotation	PF12844, NF041951, COG3655	NA	NA
UHGV-0173471_19	PHROG	phrog_87	metallo-protease	other
UHGV-0173471_19	UniRef90	UniRef90_A0A828QMF6	Peptidase_M78 domain-containing protein	NA
UHGV-0173471_19	eggNOG-mapper	1201292.DR75_1543	IrrE N-terminal-like domain	NA
UHGV-0173471_19	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0173471_19	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0173471_20	PHROG	phrog_1904	endolysin; lysM motif	lysis
UHGV-0173471_20	UniRef90	UniRef90_A0A828QPW4	LysM domain lipoprotein family protein	NA
UHGV-0173471_20	eggNOG-mapper	1201292.DR75_1486	LysM domain	NA
UHGV-0173471_20	Pfam	PF16308	NA	DUF4950
UHGV-0173471_20	COG	COG1388	LysM repeat	NA
UHGV-0173471_21	PHROG	phrog_888	NA	unknown function
UHGV-0173471_21	UniRef90	UniRef90_A0A828QL97	SHOCT domain-containing protein	NA
UHGV-0173471_21	eggNOG-mapper	226185.EF_2042	Short C-terminal domain	NA
UHGV-0173471_21	Pfam	PF09851	Short C-terminal domain	SHOCT
UHGV-0173471_22	KOfam	K14059	int; integrase	NA
UHGV-0173471_22	PHROG	phrog_1	integrase	integration and excision
UHGV-0173471_22	UniRef90	UniRef90_S4FFL9	Site-specific recombinase, phage integrase family	NA
UHGV-0173471_22	eggNOG-mapper	1260356.D920_01206	Phage integrase, N-terminal SAM-like domain	NA
UHGV-0173471_22	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0173471_22	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0173471_22	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0173471_22	Structural annotation	PF00589, PF14659, MF_01808, TIGR02224, COG4974	NA	NA
UHGV-0173471_23	eggNOG-mapper	1158607.UAU_05266	NA	NA
UHGV-0173471_23	Structural annotation	PF08863, NF011240, COG1923	NA	NA
UHGV-0173471_27	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0173471_27	PHROG	phrog_833	endolysin	lysis
UHGV-0173471_27	UniRef90	UniRef90_E0HBZ2	SH3 domain protein	NA
UHGV-0173471_27	eggNOG-mapper	1201292.DR75_1620	Ami_2	NA
UHGV-0173471_27	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0173471_27	Pfam	PF08460	Bacterial SH3 domain	SH3_5
UHGV-0173471_27	COG	COG5632	N-acetylmuramoyl-L-alanine amidase CwlA	NA
UHGV-0173471_27	Structural annotation	PF08460, PF01510, PF09629, MF_04111, NF008758, COG5632	NA	NA
UHGV-0173471_28	PHROG	phrog_881	holin	lysis
UHGV-0173471_28	UniRef90	UniRef90_A0A0M2AAC9	Holin	NA
UHGV-0173471_28	eggNOG-mapper	1201292.DR75_1493	Putative phage holin Dp-1	NA
UHGV-0173471_28	Pfam	PF16938	Putative phage holin Dp-1	Phage_holin_Dp1
UHGV-0173471_28	Structural annotation	PF16938, COG3237	NA	NA
UHGV-0173471_29	PHROG	phrog_689	holin	lysis
UHGV-0173471_29	UniRef90	UniRef90_D2IYY0	Holin	NA
UHGV-0173471_29	eggNOG-mapper	1201292.DR75_1622	Haemolysin XhlA	NA
UHGV-0173471_29	Pfam	PF10779	Haemolysin XhlA	XhlA
UHGV-0173471_30	PHROG	phrog_134	NA	unknown function
UHGV-0173471_30	UniRef90	UniRef90_A0A2S7M0P2	XkdX family protein	NA
UHGV-0173471_30	eggNOG-mapper	226185.EF_2805	Phage uncharacterised protein (Phage_XkdX)	NA
UHGV-0173471_30	Pfam	PF09693	Phage uncharacterised protein (Phage_XkdX)	Phage_XkdX
UHGV-0173471_30	NCBIFam	TIGR01669.1	XkdX family protein	NA
UHGV-0173471_31	PHROG	phrog_7298	NA	unknown function
UHGV-0173471_31	eggNOG-mapper	1158602.I590_02582	NA	NA
UHGV-0173471_32	PHROG	phrog_7389	tail fiber protein	tail
UHGV-0173471_32	UniRef90	UniRef90_A0A8E0IQM1	NA	NA
UHGV-0173471_32	eggNOG-mapper	1445810.A0A0A0PIV5_9CAUD	N-acetylmuramoyl-L-alanine amidase activity	NA
UHGV-0173471_33	PHROG	phrog_6907	NA	unknown function
UHGV-0173471_33	eggNOG-mapper	272626.lin0173	NA	NA
UHGV-0173471_34	PHROG	phrog_22125	NA	unknown function
UHGV-0173471_34	eggNOG-mapper	1201292.DR75_1499	NA	NA
UHGV-0173471_35	PHROG	phrog_6042	minor head protein	head and packaging
UHGV-0173471_35	UniRef90	UniRef90_UPI00032EA23C	phage baseplate upper protein	NA
UHGV-0173471_35	eggNOG-mapper	226185.EF_2810	NA	NA
UHGV-0173471_35	Pfam	PF10651	BppU N-terminal domain	BppU_N
UHGV-0173471_35	Structural annotation	PF10651, NF040788	NA	NA
UHGV-0173471_36	KOfam	K19304	mepM; murein DD-endopeptidase [EC:3.4.24.-]	NA
UHGV-0173471_36	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-0173471_36	UniRef90	UniRef90_UPI00046C82BB	phage tail tip lysozyme	NA
UHGV-0173471_36	eggNOG-mapper	1201292.DR75_1501	Prophage endopeptidase tail	NA
UHGV-0173471_36	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0173471_36	Pfam	PF18013	Phage tail lysozyme	Phage_lysozyme2
UHGV-0173471_36	Pfam	PF01551	Peptidase family M23	Peptidase_M23
UHGV-0173471_36	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0173471_36	COG	COG0739	Murein DD-endopeptidase MepM and murein hydrolase activator NlpD, contains LysM domain	NA
UHGV-0173471_36	Structural annotation	PF14594, PF01551, PF18013, TIGR01665, NF040883, COG4926, COG0739	NA	NA
UHGV-0173471_37	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0173471_37	UniRef90	UniRef90_Q833F7	Tail protein, putative	NA
UHGV-0173471_37	eggNOG-mapper	1201292.DR75_1502	phage tail	NA
UHGV-0173471_37	COG	COG4722	Phage-related protein YomH	NA
UHGV-0173471_37	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-0173471_38	PHROG	phrog_1686	tail length tape measure protein	tail
UHGV-0173471_38	UniRef90	UniRef90_A0A640NQ37	Tail tape measure protein	NA
UHGV-0173471_38	eggNOG-mapper	1201292.DR75_1503	Phage tail tape measure protein, TP901 family	NA
UHGV-0173471_38	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-0173471_38	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-0173471_38	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0173471_38	Structural annotation	PF20155, COG3941	NA	NA
UHGV-0173471_39	PHROG	phrog_187	head-tail adaptor	connector
UHGV-0173471_39	eggNOG-mapper	1201292.DR75_1504	NA	NA
UHGV-0173471_40	KOfam	K20846	cgkA; kappa-carrageenase [EC:3.2.1.83]	NA
UHGV-0173471_40	PHROG	phrog_88	major tail protein	tail
UHGV-0173471_40	UniRef90	UniRef90_A0A125W444	Phage major tail protein, phi13 family	NA
UHGV-0173471_40	eggNOG-mapper	1201292.DR75_1505	Maj_tail_phi13 phage major tail , phi13 family protein	NA
UHGV-0173471_40	Pfam	PF02368	Bacterial Ig-like domain (group 2)	Big_2
UHGV-0173471_40	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0173471_40	COG	COG5492	NA	NA
UHGV-0173471_41	PHROG	phrog_525	NA	unknown function
UHGV-0173471_41	eggNOG-mapper	1201292.DR75_1506	NA	NA
UHGV-0173471_41	Pfam	PF20765	NA	DUF6838
UHGV-0173471_41	Structural annotation	PF20765	NA	NA
UHGV-0173471_42	UniRef90	UniRef90_UPI0006672BAF	HK97 gp10 family phage protein	NA
UHGV-0173471_42	eggNOG-mapper	1201292.DR75_1507	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0173471_42	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0173471_42	Structural annotation	PF17395, TIGR01725, COG5005	NA	NA
UHGV-0173471_43	PHROG	phrog_615	head-tail adaptor	connector
UHGV-0173471_43	UniRef90	UniRef90_R3KCN7	50S ribosomal protein L23	NA
UHGV-0173471_43	eggNOG-mapper	1201292.DR75_1508	NA	NA
UHGV-0173471_43	Structural annotation	PF12206, TIGR01563, COG5614	NA	NA
UHGV-0173471_44	PHROG	phrog_132	head-tail adaptor	connector
UHGV-0173471_44	eggNOG-mapper	1201292.DR75_1509	NA	NA
UHGV-0173471_45	PHROG	phrog_8832	NA	unknown function
UHGV-0173471_45	eggNOG-mapper	1201292.DR75_1510	NA	NA
UHGV-0173471_46	PHROG	phrog_1328	major head protein	head and packaging
UHGV-0173471_46	UniRef90	UniRef90_UPI00094A476A	NA	NA
UHGV-0173471_46	eggNOG-mapper	1201292.DR75_1511	NA	NA
UHGV-0173471_46	Pfam	PF17236	NA	DUF5309
UHGV-0173471_46	Structural annotation	PF17236, MF_04119, NF033394, COG4834	NA	NA
UHGV-0173471_47	PHROG	phrog_172	head scaffolding protein	head and packaging
UHGV-0173471_47	UniRef90	UniRef90_UPI00033113BC	NA	NA
UHGV-0173471_47	eggNOG-mapper	1201292.DR75_1512	NA	NA
UHGV-0173471_47	Pfam	PF14265	NA	DUF4355
UHGV-0173471_47	Structural annotation	PF14265	NA	NA
UHGV-0173471_48	PHROG	phrog_12801	NA	unknown function
UHGV-0173471_49	PHROG	phrog_5859	NA	unknown function
UHGV-0173471_49	eggNOG-mapper	1201292.DR75_1513	NA	NA
UHGV-0173471_49	Structural annotation	PF03927, MF_02200, NF009840, COG3471	NA	NA
UHGV-0173471_50	PHROG	phrog_30662	NA	unknown function
UHGV-0173471_50	UniRef90	UniRef90_A0A125W463	Coenzyme F420 hydrogenase domain protein	NA
UHGV-0173471_51	PHROG	phrog_4728	head morphogenesis	head and packaging
UHGV-0173471_51	UniRef90	UniRef90_A0A828QQH8	Phage head morphogenesis protein, SPP1 gp7 family	NA
UHGV-0173471_51	eggNOG-mapper	1201292.DR75_1515	cell adhesion	NA
UHGV-0173471_51	COG	COG2369	NA	NA
UHGV-0173471_51	Structural annotation	PF04233, TIGR01641, COG2369	NA	NA
UHGV-0173471_52	PHROG	phrog_64	portal protein	head and packaging
UHGV-0173471_52	UniRef90	UniRef90_R3KC41	SPP1 family phage portal protein	NA
UHGV-0173471_52	eggNOG-mapper	1201292.DR75_1516	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0173471_52	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0173471_52	Structural annotation	PF05133, MF_04120, TIGR01538, COG5518	NA	NA
UHGV-0173471_53	PHROG	phrog_30251	terminase large subunit	head and packaging
UHGV-0173471_53	UniRef90	UniRef90_A0A7H0FTL4	Phage terminase large subunit	NA
UHGV-0173471_53	eggNOG-mapper	226185.EF_2017	Terminase-like family	NA
UHGV-0173471_53	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0173471_53	NCBIFam	TIGR01630.1	phage terminase large subunit	NA
UHGV-0173471_53	COG	COG5410	NA	NA
UHGV-0173471_53	Structural annotation	PF17289, PF03237, MF_04147, NF033889, COG5410, COG5362	NA	NA
UHGV-0173471_54	PHROG	phrog_309	terminase small subunit	head and packaging
UHGV-0173471_54	UniRef90	UniRef90_UPI00115D8819	helix-turn-helix domain-containing protein	NA
UHGV-0173471_54	eggNOG-mapper	226185.EF_2018	transposase activity	NA
UHGV-0173471_54	Pfam	PF13384	Homeodomain-like domain	HTH_23
UHGV-0173471_54	COG	COG2963	Transposase InsE and inactivated derivatives	NA
UHGV-0173471_54	Structural annotation	PF07141	NA	NA
UHGV-0173471_55	PHROG	phrog_19998	NA	unknown function
UHGV-0173471_55	eggNOG-mapper	1104325.M7W_1349	NA	NA
UHGV-0173471_56	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0173471_56	UniRef90	UniRef90_R3IEI4	RinA family phage transcriptional regulator	NA
UHGV-0173471_56	eggNOG-mapper	1158612.I580_02503	Transcriptional regulator, RinA family	NA
UHGV-0173471_56	NCBIFam	TIGR01636.1	phage transcriptional regulator, RinA family	NA
UHGV-0173471_56	Structural annotation	PF05263, TIGR01636	NA	NA
UHGV-0173471_57	PHROG	phrog_1335	NA	unknown function
UHGV-0173471_58	PHROG	phrog_121	NA	unknown function
UHGV-0173471_58	UniRef90	UniRef90_UPI000DEA2357	NA	NA
UHGV-0173471_58	eggNOG-mapper	673832.D2IYV1_9CAUD	NA	NA
UHGV-0173471_58	Pfam	PF07852	NA	DUF1642
UHGV-0173471_58	Structural annotation	PF07852	NA	NA
UHGV-0173471_59	PHROG	phrog_34651	NA	unknown function
UHGV-0173471_60	PHROG	phrog_17071	NA	unknown function
UHGV-0173471_61	PHROG	phrog_13489	NA	unknown function
UHGV-0173471_61	eggNOG-mapper	1158602.I590_00660	NA	NA
UHGV-0173471_62	PHROG	phrog_8684	NA	unknown function
UHGV-0173471_62	UniRef90	UniRef90_UPI001C8C120C	YopX family protein	NA
UHGV-0173471_62	eggNOG-mapper	673837.D2IZS1_9CAUD	YopX protein	NA
UHGV-0173471_62	Pfam	PF09643	YopX protein	YopX
UHGV-0173471_62	NCBIFam	TIGR01671.1	phage conserved hypothetical protein TIGR01671	NA