UHGV-0173486

Genome information

Genome length 39,332 bps

CDS count 69

Completeness 93.22% (high-quality)

geNomad score 0.9813

Prediction confidence Confident

Genome information
Genome ID	UHGV-0173486
vOTU ID	vOTU-064591
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_589222
BioSample	SAMN09781775
Country	Madagascar
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	93.22% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	14
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9813
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	34.3
Jumbo phage	No

Genome content
Genome length	39,332 bps
GC content	58.34%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	69
CDS density	92.23%
Average CDS length	529.83 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0173486_1	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0173486_1	UniRef90	UniRef90_A0A3D3FGT2	Sigma70_r4 domain-containing protein	NA
UHGV-0173486_1	eggNOG-mapper	689781.AUJX01000031_gene120	NA	NA
UHGV-0173486_1	Pfam	PF04545	Sigma-70, region 4	Sigma70_r4
UHGV-0173486_1	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0173486_2	PHROG	phrog_2412	NA	unknown function
UHGV-0173486_2	eggNOG-mapper	742738.HMPREF9460_02504	NA	NA
UHGV-0173486_3	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0173486_3	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0173486_3	UniRef90	UniRef90_UPI00164D9352	PBSX family phage terminase large subunit	NA
UHGV-0173486_3	eggNOG-mapper	665956.HMPREF1032_02957	Phage terminase, large subunit, PBSX family	NA
UHGV-0173486_3	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0173486_3	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0173486_3	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0173486_3	COG	COG1783	Phage terminase large subunit	NA
UHGV-0173486_3	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0173486_5	PHROG	phrog_533	portal protein	head and packaging
UHGV-0173486_5	UniRef90	UniRef90_UPI000680A1DB	phage portal protein	NA
UHGV-0173486_5	eggNOG-mapper	693746.OBV_18040	NA	NA
UHGV-0173486_5	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0173486_6	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0173486_6	UniRef90	UniRef90_UPI0006814CA4	phage minor capsid protein	NA
UHGV-0173486_6	eggNOG-mapper	693746.OBV_18050	Phage minor capsid protein 2	NA
UHGV-0173486_6	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0173486_6	COG	COG2369	NA	NA
UHGV-0173486_6	Structural annotation	PF06152, PF15542, TIGR01641, COG2369	NA	NA
UHGV-0173486_8	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0173486_8	UniRef90	UniRef90_UPI00164D9F94	phage scaffolding protein	NA
UHGV-0173486_8	eggNOG-mapper	693746.OBV_18080	COG NOG36366 non supervised orthologous group	NA
UHGV-0173486_8	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0173486_8	Structural annotation	PF06810	NA	NA
UHGV-0173486_9	PHROG	phrog_212	major head protein	head and packaging
UHGV-0173486_9	UniRef90	UniRef90_A0A354MR33	Phage capsid protein	NA
UHGV-0173486_9	eggNOG-mapper	1232449.BAHV02000010_gene2714	NA	NA
UHGV-0173486_9	Structural annotation	PF05065, MF_04119, NF041162, COG4653	NA	NA
UHGV-0173486_10	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0173486_10	eggNOG-mapper	693746.OBV_18110	NA	NA
UHGV-0173486_11	Structural annotation	PF20536, MF_01370, TIGR02126	NA	NA
UHGV-0173486_12	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0173486_12	UniRef90	UniRef90_UPI0006805998	minor capsid protein	NA
UHGV-0173486_12	eggNOG-mapper	642492.Clole_0824	Minor capsid protein	NA
UHGV-0173486_12	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0173486_12	Structural annotation	PF11114	NA	NA
UHGV-0173486_13	PHROG	phrog_3266	tail completion	connector
UHGV-0173486_13	eggNOG-mapper	693746.OBV_18140	NA	NA
UHGV-0173486_13	Structural annotation	PF20765	NA	NA
UHGV-0173486_14	PHROG	phrog_3099	NA	unknown function
UHGV-0173486_14	eggNOG-mapper	1226322.HMPREF1545_00056	NA	NA
UHGV-0173486_14	Structural annotation	TIGR02126	NA	NA
UHGV-0173486_15	PHROG	phrog_11299	NA	unknown function
UHGV-0173486_15	eggNOG-mapper	693746.OBV_18160	NA	NA
UHGV-0173486_15	Structural annotation	PF10666	NA	NA
UHGV-0173486_16	PHROG	phrog_706	NA	unknown function
UHGV-0173486_16	UniRef90	UniRef90_UPI00164D7633	Gp15 family bacteriophage protein	NA
UHGV-0173486_16	eggNOG-mapper	693746.OBV_18170	Bacteriophage Gp15 protein	NA
UHGV-0173486_16	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0173486_16	Structural annotation	PF06854	NA	NA
UHGV-0173486_17	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0173486_17	UniRef90	UniRef90_A0A810PX76	Phage tail tape measure protein	NA
UHGV-0173486_17	eggNOG-mapper	1235797.C816_04182	SLT domain	NA
UHGV-0173486_17	COG	COG1511	NA	NA
UHGV-0173486_17	Structural annotation	PF16789, TIGR02473	NA	NA
UHGV-0173486_18	PHROG	phrog_1194	NA	unknown function
UHGV-0173486_18	eggNOG-mapper	1226322.HMPREF1545_00060	NA	NA
UHGV-0173486_18	Structural annotation	PF20458, TIGR01633, COG3499	NA	NA
UHGV-0173486_19	PHROG	phrog_13879	NA	unknown function
UHGV-0173486_19	eggNOG-mapper	693746.OBV_18210	NA	NA
UHGV-0173486_19	Structural annotation	PF14594, PF03256, NF033848, COG4379, COG5156	NA	NA
UHGV-0173486_20	PHROG	phrog_18725	NA	unknown function
UHGV-0173486_20	eggNOG-mapper	693746.OBV_18220	NA	NA
UHGV-0173486_23	PHROG	phrog_937	hemolysin	other
UHGV-0173486_23	eggNOG-mapper	1519439.JPJG01000023_gene533	NA	NA
UHGV-0173486_24	PHROG	phrog_23092	NA	unknown function
UHGV-0173486_24	eggNOG-mapper	1226322.HMPREF1545_02839	NA	NA
UHGV-0173486_25	eggNOG-mapper	877414.ATWA01000062_gene1616	NA	NA
UHGV-0173486_25	Structural annotation	PF10651, NF033814, COG5456	NA	NA
UHGV-0173486_30	PHROG	phrog_1129	holin	lysis
UHGV-0173486_30	UniRef90	UniRef90_A0A1C7FPV3	Enolase	NA
UHGV-0173486_30	eggNOG-mapper	1226322.HMPREF1545_00069	Phage holin family Hol44, in holin superfamily V	NA
UHGV-0173486_30	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-0173486_30	Structural annotation	PF06946	NA	NA
UHGV-0173486_31	KOfam	K08640	E3.4.17.14; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14]	NA
UHGV-0173486_31	PHROG	phrog_18955	NA	unknown function
UHGV-0173486_31	UniRef90	UniRef90_UPI001C1061EB	D-Ala-D-Ala carboxypeptidase family metallohydrolase	NA
UHGV-0173486_31	eggNOG-mapper	1235797.C816_04171	Peptidase M15	NA
UHGV-0173486_31	Pfam	PF09992	Phosphodiester glycosidase	NAGPA
UHGV-0173486_31	Pfam	PF08291	Peptidase M15	Peptidase_M15_3
UHGV-0173486_31	COG	COG3108	NA	NA
UHGV-0173486_31	Structural annotation	PF09992, PF08291, COG4632, COG3108	NA	NA
UHGV-0173486_32	UniRef90	UniRef90_A0A8D9PDQ3	ECF sigma factor	NA
UHGV-0173486_32	Structural annotation	PF04545, MF_00674, NF008895, COG1342	NA	NA
UHGV-0173486_34	PHROG	phrog_25567	NA	unknown function
UHGV-0173486_34	UniRef90	UniRef90_UPI00164AED9E	helix-turn-helix domain-containing protein	NA
UHGV-0173486_34	COG	COG2944	DNA-binding transcriptional regulator YiaG, XRE-type HTH domain	NA
UHGV-0173486_34	Structural annotation	NF040522, COG2944	NA	NA
UHGV-0173486_38	PHROG	phrog_22984	NA	unknown function
UHGV-0173486_39	PHROG	phrog_16490	NA	unknown function
UHGV-0173486_39	eggNOG-mapper	476272.RUMHYD_01770	NA	NA
UHGV-0173486_40	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0173486_41	UniRef90	UniRef90_A0A8F0WD75	RNA polymerase sigma factor/Ubiquitin-like protein	NA
UHGV-0173486_41	eggNOG-mapper	1408437.JNJN01000043_gene801	NA	NA
UHGV-0173486_42	KOfam	K14059	int; integrase	NA
UHGV-0173486_42	PHROG	phrog_1	integrase	integration and excision
UHGV-0173486_42	UniRef90	UniRef90_A0A1C5W824	Integrase	NA
UHGV-0173486_42	eggNOG-mapper	445972.ANACOL_01797	Belongs to the 'phage' integrase family	NA
UHGV-0173486_42	Pfam	PF13240	zinc-ribbon domain	zinc_ribbon_2
UHGV-0173486_42	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0173486_42	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0173486_42	Structural annotation	PF00589, MF_01807, TIGR02224, COG4973	NA	NA
UHGV-0173486_43	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0173486_43	COG	COG1426	NA	NA
UHGV-0173486_43	Structural annotation	PF13443, MF_00535, NF041951, COG1476	NA	NA
UHGV-0173486_45	Structural annotation	COG1321	NA	NA
UHGV-0173486_46	Structural annotation	NF041951, COG3655	NA	NA
UHGV-0173486_47	KOfam	K07448	mrr; restriction system protein	NA
UHGV-0173486_47	PHROG	phrog_19856	NA	unknown function
UHGV-0173486_47	UniRef90	UniRef90_A0A402GU72	Mrr_cat domain-containing protein	NA
UHGV-0173486_47	eggNOG-mapper	689781.AUJX01000015_gene1540	restriction endonuclease	NA
UHGV-0173486_47	PADLOC	ZorD1_00005	SWI2/SNF2 helicase, Mrr-like nuclease	Zorya
UHGV-0173486_47	Pfam	PF04471	Restriction endonuclease	Mrr_cat
UHGV-0173486_47	COG	COG1787	Endonuclease, HJR/Mrr/RecB family	NA
UHGV-0173486_47	Structural annotation	PF04471, PF09397, NF003162, COG1787	NA	NA
UHGV-0173486_48	eggNOG-mapper	1256908.HMPREF0373_02563	Helix-turn-helix domain	NA
UHGV-0173486_48	Pfam	PF13560	Helix-turn-helix domain	HTH_31
UHGV-0173486_48	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0173486_48	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0173486_50	UniRef90	UniRef90_A0A8D9PDM8	Pyocin activator protein	NA
UHGV-0173486_50	Structural annotation	PF11112, COG3311	NA	NA
UHGV-0173486_52	PHROG	phrog_757	DNA methyltransferase	other
UHGV-0173486_52	UniRef90	UniRef90_UPI001C00B13F	DNA cytosine methyltransferase	NA
UHGV-0173486_52	eggNOG-mapper	748224.HMPREF9436_03069	DNA (cytosine-5-)-methyltransferase activity	NA
UHGV-0173486_52	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0173486_52	Structural annotation	PF00145, MF_01872, TIGR00675, COG0270	NA	NA
UHGV-0173486_53	KOfam	K00390	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	NA
UHGV-0173486_53	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0173486_53	UniRef90	UniRef90_A0A1H7KWC5	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase	NA
UHGV-0173486_53	eggNOG-mapper	665956.HMPREF1032_00140	Phosphoadenosine phosphosulfate reductase family	NA
UHGV-0173486_53	Pfam	PF01507	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
UHGV-0173486_53	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0173486_53	Structural annotation	PF01507, MF_00063, NF006327, COG0175	NA	NA
UHGV-0173486_56	PHROG	phrog_434	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0173486_56	UniRef90	UniRef90_A0A1Y4W4B5	YqaJ domain-containing protein	NA
UHGV-0173486_56	eggNOG-mapper	1121344.JHZO01000003_gene985	YqaJ viral recombinase family	NA
UHGV-0173486_56	Pfam	PF09588	YqaJ-like viral recombinase domain	YqaJ
UHGV-0173486_56	NCBIFam	TIGR03033.1	putative phage-type endonuclease	NA
UHGV-0173486_56	COG	COG5377	Phage-related protein, predicted endonuclease	NA
UHGV-0173486_56	Structural annotation	PF09588, MF_03030, TIGR03033, COG5377	NA	NA
UHGV-0173486_57	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-0173486_57	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0173486_57	UniRef90	UniRef90_UPI000951721D	recombinase RecT	NA
UHGV-0173486_57	eggNOG-mapper	1226322.HMPREF1545_00015	RecT family	NA
UHGV-0173486_57	Pfam	PF03837	RecT family	RecT
UHGV-0173486_57	NCBIFam	TIGR00616.1	recombinase, phage RecT family	NA
UHGV-0173486_57	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-0173486_57	Structural annotation	PF03837, NF007351, COG3723	NA	NA
UHGV-0173486_58	PHROG	phrog_7370	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0173486_58	UniRef90	UniRef90_R5XZW2	HNH domain-containing protein	NA
UHGV-0173486_58	eggNOG-mapper	1235800.C819_02254	HNH nucleases	NA
UHGV-0173486_58	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0173486_59	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0173486_59	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0173486_59	UniRef90	UniRef90_G4L1H2	Single-stranded DNA-binding protein	NA
UHGV-0173486_59	eggNOG-mapper	693746.OBV_12860	Single-strand binding protein family	NA
UHGV-0173486_59	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0173486_59	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0173486_59	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0173486_59	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0173486_59	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0173486_60	PHROG	phrog_5810	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0173486_60	UniRef90	UniRef90_A0A417QFV0	Transcriptional regulator	NA
UHGV-0173486_60	eggNOG-mapper	742740.HMPREF9474_03117	NA	NA
UHGV-0173486_60	Structural annotation	PF01978, NF000243, COG0735	NA	NA
UHGV-0173486_61	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-0173486_61	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0173486_61	UniRef90	UniRef90_A0A810Q3X8	IstB_IS21 domain-containing protein	NA
UHGV-0173486_61	eggNOG-mapper	445972.ANACOL_01829	NA	NA
UHGV-0173486_61	Pfam	PF01695	IstB-like ATP binding protein	IstB_IS21
UHGV-0173486_61	COG	COG1484	DNA replication protein DnaC	NA
UHGV-0173486_61	Structural annotation	PF01695, MF_01158, NF005378, COG1484	NA	NA
UHGV-0173486_63	PHROG	phrog_474	phosphofructokinase	other
UHGV-0173486_63	UniRef90	UniRef90_A0A2V2EHL9	NA	NA
UHGV-0173486_63	eggNOG-mapper	1203606.HMPREF1526_00237	NA	NA
UHGV-0173486_63	Pfam	PF19905	NA	DUF6378
UHGV-0173486_63	Structural annotation	PF19905	NA	NA
UHGV-0173486_68	UniRef90	UniRef90_A0A098GES5	Putative phage associated protein	NA
UHGV-0173486_68	Structural annotation	PF01423, MF_00257, NF001963, COG1958	NA	NA