UHGV-0173506

Genome information

Genome length 31,757 bps

CDS count 48

Completeness 82.23% (medium-quality)

geNomad score 0.9646

Prediction confidence Confident

Genome information
Genome ID	UHGV-0173506
vOTU ID	vOTU-028685
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_579285
BioSample	SAMN09781739
Country	Madagascar
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	82.23% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	16
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9646
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	44.21
Jumbo phage	No

Genome content
Genome length	31,757 bps
GC content	27.86%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	48
CDS density	89.81%
Average CDS length	596.19 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0173506_2	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-0173506_2	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0173506_2	UniRef90	UniRef90_UPI0004867CC9	helix-turn-helix domain-containing protein	NA
UHGV-0173506_2	eggNOG-mapper	1211817.CCAT010000003_gene272	Helix-turn-helix XRE-family like proteins	NA
UHGV-0173506_2	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0173506_2	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0173506_2	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0173506_3	UniRef90	UniRef90_UPI00084D082C	helix-turn-helix domain-containing protein	NA
UHGV-0173506_3	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0173506_3	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0173506_3	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0173506_4	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-0173506_4	PHROG	phrog_3	transcriptional repressor	transcription regulation
UHGV-0173506_4	UniRef90	UniRef90_UPI00085BBE37	helix-turn-helix domain-containing protein	NA
UHGV-0173506_4	eggNOG-mapper	1487921.DP68_08680	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0173506_4	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0173506_4	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0173506_4	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0173506_6	PHROG	phrog_373	anti-repressor	transcription regulation
UHGV-0173506_6	UniRef90	UniRef90_UPI0018AC2428	Rha family transcriptional regulator	NA
UHGV-0173506_6	eggNOG-mapper	1414720.CBYM010000002_gene582	ORF6C domain	NA
UHGV-0173506_6	Pfam	PF09669	Phage regulatory protein Rha (Phage_pRha)	Phage_pRha
UHGV-0173506_6	Pfam	PF10552	ORF6C domain	ORF6C
UHGV-0173506_6	NCBIFam	TIGR02681.1	phage regulatory protein, Rha family	NA
UHGV-0173506_6	COG	COG3646	Phage regulatory protein Rha	NA
UHGV-0173506_6	Structural annotation	PF10552, PF09669, TIGR02681, COG3646	NA	NA
UHGV-0173506_7	UniRef90	UniRef90_A0A1C6HV05	Spo0E like sporulation regulatory protein	NA
UHGV-0173506_7	Pfam	PF09388	Spo0E like sporulation regulatory protein	SpoOE-like
UHGV-0173506_7	Structural annotation	PF09388	NA	NA
UHGV-0173506_8	PHROG	phrog_1163	NA	unknown function
UHGV-0173506_8	UniRef90	UniRef90_UPI0004ADE4E6	phage replisome organizer N-terminal domain-containing protein	NA
UHGV-0173506_8	eggNOG-mapper	1414720.CBYM010000001_gene675	N-terminal phage replisome organiser (Phage_rep_org_N)	NA
UHGV-0173506_8	Pfam	PF09681	N-terminal phage replisome organiser (Phage_rep_org_N)	Phage_rep_org_N
UHGV-0173506_8	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0173506_8	Pfam	PF09524	Conserved phage C-terminus (Phg_2220_C)	Phg_2220_C
UHGV-0173506_8	NCBIFam	TIGR02220.1	phage conserved hypothetical protein, C-terminal domain	NA
UHGV-0173506_8	Structural annotation	PF09681, PF09524, TIGR01714, TIGR02220, COG3388	NA	NA
UHGV-0173506_9	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-0173506_9	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0173506_9	UniRef90	UniRef90_A0A1C6JJ89	DNA replication protein	NA
UHGV-0173506_9	eggNOG-mapper	1414720.CBYM010000001_gene676	PFAM IstB-like ATP binding protein	NA
UHGV-0173506_9	Pfam	PF01695	IstB-like ATP binding protein	IstB_IS21
UHGV-0173506_9	COG	COG1484	DNA replication protein DnaC	NA
UHGV-0173506_9	Structural annotation	PF01695, MF_01919, NF005378, COG1484	NA	NA
UHGV-0173506_11	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0173506_11	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0173506_11	UniRef90	UniRef90_UPI0018AC5EC3	single-stranded DNA-binding protein	NA
UHGV-0173506_11	eggNOG-mapper	1414720.CBYM010000010_gene3150	Single-stranded DNA-binding protein	NA
UHGV-0173506_11	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0173506_11	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0173506_11	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0173506_11	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0173506_11	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-0173506_12	PHROG	phrog_323	endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0173506_12	UniRef90	UniRef90_A0A410PPK7	HTH myb-type domain-containing protein	NA
UHGV-0173506_12	eggNOG-mapper	1196322.A370_05734	SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains	NA
UHGV-0173506_12	Pfam	PF13921	Myb-like DNA-binding domain	Myb_DNA-bind_6
UHGV-0173506_12	dbAPIS	APIS006	Trigger programmed cell death (PCD) by P4 prophage.	NA
UHGV-0173506_12	Structural annotation	PF01710, NF040595, COG5147	NA	NA
UHGV-0173506_16	UniRef90	UniRef90_R5F553	Phosphoribosylformylglycinamidine synthase II	NA
UHGV-0173506_16	eggNOG-mapper	1414720.CBYM010000040_gene1633	NA	NA
UHGV-0173506_17	eggNOG-mapper	999411.HMPREF1092_03351	NA	NA
UHGV-0173506_19	KOfam	K09777	remA; extracellular matrix regulatory protein A	NA
UHGV-0173506_19	UniRef90	UniRef90_UPI0004B7DE6E	NA	NA
UHGV-0173506_19	eggNOG-mapper	1414720.CBYM010000001_gene689	NA	NA
UHGV-0173506_19	Pfam	PF04025	Extracellular matrix regulatory protein A-like	RemA-like
UHGV-0173506_19	NCBIFam	NF003315.0	hypothetical protein	NA
UHGV-0173506_19	COG	COG2052	NA	NA
UHGV-0173506_19	Structural annotation	PF04025, MF_01503, NF003315, COG2052	NA	NA
UHGV-0173506_20	PHROG	phrog_9628	NA	unknown function
UHGV-0173506_20	UniRef90	UniRef90_UPI001C8CCE1F	DNA-binding response regulator	NA
UHGV-0173506_20	eggNOG-mapper	1414720.CBYM010000001_gene690	NA	NA
UHGV-0173506_20	Structural annotation	PF06056, COG2771	NA	NA
UHGV-0173506_21	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-0173506_21	PHROG	phrog_216	integrase	integration and excision
UHGV-0173506_21	UniRef90	UniRef90_A0A1C6DLA6	Site-specific tyrosine recombinase XerC	NA
UHGV-0173506_21	eggNOG-mapper	1414720.CBYM010000001_gene692	Phage integrase family	NA
UHGV-0173506_21	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0173506_21	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0173506_21	Structural annotation	PF00589, MF_01807, NF040815, COG4974	NA	NA
UHGV-0173506_22	PHROG	phrog_309	terminase small subunit	head and packaging
UHGV-0173506_22	UniRef90	UniRef90_UPI001DAC378E	Xaa-His dipeptidase	NA
UHGV-0173506_22	eggNOG-mapper	545697.HMPREF0216_03156	transposase activity	NA
UHGV-0173506_22	Pfam	PF07574	Nse1 non-SMC component of SMC5-6 complex	SMC_Nse1
UHGV-0173506_22	COG	COG2963	Transposase InsE and inactivated derivatives	NA
UHGV-0173506_23	PHROG	phrog_144	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0173506_23	UniRef90	UniRef90_A0A0E1KY43	HNH endonuclease family protein	NA
UHGV-0173506_23	eggNOG-mapper	536232.CLM_2937	HNH nucleases	NA
UHGV-0173506_24	PHROG	phrog_83	terminase small subunit	head and packaging
UHGV-0173506_24	UniRef90	UniRef90_UPI0018A8F73F	phage terminase small subunit P27 family	NA
UHGV-0173506_24	eggNOG-mapper	545697.HMPREF0216_01748	phage terminase small subunit	NA
UHGV-0173506_24	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0173506_24	NCBIFam	TIGR01558.1	phage terminase small subunit P27 family	NA
UHGV-0173506_24	COG	COG3747	Phage terminase, small subunit	NA
UHGV-0173506_24	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0173506_25	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0173506_25	UniRef90	UniRef90_UPI0018AC1132	terminase large subunit	NA
UHGV-0173506_25	eggNOG-mapper	1291050.JAGE01000001_gene2919	large subunit	NA
UHGV-0173506_25	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0173506_25	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0173506_25	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0173506_25	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0173506_27	PHROG	phrog_12	portal protein	head and packaging
UHGV-0173506_27	UniRef90	UniRef90_UPI0018A98C58	phage portal protein	NA
UHGV-0173506_27	eggNOG-mapper	545697.HMPREF0216_01745	Phage portal protein, HK97 family	NA
UHGV-0173506_27	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0173506_27	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0173506_27	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0173506_27	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0173506_28	KOfam	K06904	NA	NA
UHGV-0173506_28	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-0173506_28	UniRef90	UniRef90_UPI0018AB3ECB	HK97 family phage prohead protease	NA
UHGV-0173506_28	eggNOG-mapper	545697.HMPREF0216_03154	Phage prohead protease, HK97 family	NA
UHGV-0173506_28	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0173506_28	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-0173506_28	COG	COG3740	Phage head maturation protease	NA
UHGV-0173506_28	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0173506_29	PHROG	phrog_10	major head protein	head and packaging
UHGV-0173506_29	UniRef90	UniRef90_UPI0018AC678D	phage major capsid protein	NA
UHGV-0173506_29	eggNOG-mapper	545697.HMPREF0216_01742	Phage major capsid protein, HK97 family	NA
UHGV-0173506_29	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0173506_29	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0173506_29	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0173506_29	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0173506_30	UniRef90	UniRef90_A0A174D5E0	NA	NA
UHGV-0173506_30	eggNOG-mapper	536233.CLO_2521	Phage gp6-like head-tail connector protein	NA
UHGV-0173506_30	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-0173506_31	UniRef90	UniRef90_UPI0018AA060D	head-tail adaptor protein	NA
UHGV-0173506_31	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0173506_32	UniRef90	UniRef90_L1QEY1	Phage protein, HK97 gp10 family	NA
UHGV-0173506_32	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0173506_32	Structural annotation	PF04883, TIGR01725	NA	NA
UHGV-0173506_33	PHROG	phrog_78	tail terminator	connector
UHGV-0173506_33	UniRef90	UniRef90_UPI001AE29CF0	prohead protease	NA
UHGV-0173506_33	eggNOG-mapper	431943.CKL_4061	NA	NA
UHGV-0173506_33	Structural annotation	PF05657	NA	NA
UHGV-0173506_34	PHROG	phrog_88	major tail protein	tail
UHGV-0173506_34	Structural annotation	PF06488, TIGR01603, COG3498	NA	NA
UHGV-0173506_35	Structural annotation	PF12363	NA	NA
UHGV-0173506_36	PHROG	phrog_1533	tail length tape measure protein	tail
UHGV-0173506_36	UniRef90	UniRef90_L1QFS8	Phage tail tape measure protein, TP901 family	NA
UHGV-0173506_36	eggNOG-mapper	545697.HMPREF0216_01735	phage tail tape measure protein	NA
UHGV-0173506_36	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0173506_36	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0173506_36	COG	COG5283	Phage-related tail protein	NA
UHGV-0173506_36	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-0173506_37	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0173506_37	UniRef90	UniRef90_UPI0018A88BFF	phage tail family protein	NA
UHGV-0173506_37	eggNOG-mapper	545697.HMPREF0216_01734	Phage tail protein	NA
UHGV-0173506_37	Structural annotation	PF16774, PF20753, TIGR01633, COG4722	NA	NA
UHGV-0173506_38	UniRef90	UniRef90_UPI0018AA9E64	phage tail protein	NA
UHGV-0173506_38	eggNOG-mapper	545697.HMPREF0216_01733	NA	NA
UHGV-0173506_38	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0173506_38	Structural annotation	PF14594, NF033848, COG4379	NA	NA
UHGV-0173506_39	PHROG	phrog_1220	head protein	head and packaging
UHGV-0173506_39	eggNOG-mapper	86416.Clopa_1911	NA	NA
UHGV-0173506_41	Structural annotation	PF20787, TIGR01669	NA	NA
UHGV-0173506_43	PHROG	phrog_5240	tail fiber protein	tail
UHGV-0173506_43	UniRef90	UniRef90_UPI001056B5FA	SGNH/GDSL hydrolase family protein	NA
UHGV-0173506_43	eggNOG-mapper	86416.Clopa_2555	lipolytic protein G-D-S-L family	NA
UHGV-0173506_43	Pfam	PF13472	GDSL-like Lipase/Acylhydrolase family	Lipase_GDSL_2
UHGV-0173506_43	COG	COG2755	Lysophospholipase L1 or related esterase. Includes spore coat protein LipC/YcsK	NA
UHGV-0173506_43	Structural annotation	PF16255, NF041897, COG2845	NA	NA
UHGV-0173506_44	PHROG	phrog_199	holin	lysis
UHGV-0173506_44	UniRef90	UniRef90_UPI001C8CEBE4	phage holin family protein	NA
UHGV-0173506_44	eggNOG-mapper	1178540.BA70_17650	Bacteriophage holin family	NA
UHGV-0173506_44	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0173506_44	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0173506_44	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-0173506_44	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0173506_45	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0173506_45	PHROG	phrog_12727	endolysin	lysis
UHGV-0173506_45	UniRef90	UniRef90_UPI001C8B8D79	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0173506_45	eggNOG-mapper	1414720.CBYM010000014_gene2742	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0173506_45	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-0173506_45	Pfam	PF05036	SPOR domain	SPOR
UHGV-0173506_45	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0173506_45	Structural annotation	PF01520, MF_00562, TIGR02883, COG0860	NA	NA