UHGV-0173511

Genome information

Genome length 34,120 bps

CDS count 54

Completeness 99.96% (high-quality)

geNomad score 0.9796

Prediction confidence Confident

Genome information
Genome ID	UHGV-0173511
vOTU ID	vOTU-060957
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_579282
BioSample	SAMN09781739
Country	Madagascar
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.96% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	19
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9796
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	36.25
Jumbo phage	No

Genome content
Genome length	34,120 bps
GC content	57.71%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	54
CDS density	93.04%
Average CDS length	594.28 bps
tRNA count	2
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0173511_1	PHROG	phrog_263	holin	lysis
UHGV-0173511_1	UniRef90	UniRef90_A0A2A6ZGP9	Phage holin	NA
UHGV-0173511_1	eggNOG-mapper	748224.HMPREF9436_01413	SPP1 phage holin	NA
UHGV-0173511_1	Pfam	PF04688	SPP1 phage holin	Holin_SPP1
UHGV-0173511_1	NCBIFam	TIGR01592.1	phage holin	NA
UHGV-0173511_1	Structural annotation	PF04688, TIGR01592	NA	NA
UHGV-0173511_2	PHROG	phrog_199	holin	lysis
UHGV-0173511_2	UniRef90	UniRef90_A0A2A6ZGX7	Holin	NA
UHGV-0173511_2	eggNOG-mapper	742740.HMPREF9474_02333	Bacteriophage holin family	NA
UHGV-0173511_2	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0173511_2	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0173511_2	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-0173511_2	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0173511_3	KOfam	K08640	E3.4.17.14; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14]	NA
UHGV-0173511_3	PHROG	phrog_894	endolysin	lysis
UHGV-0173511_3	UniRef90	UniRef90_A0A3C0D0L9	Peptidase M15	NA
UHGV-0173511_3	eggNOG-mapper	748224.HMPREF9436_03320	Peptidase M15	NA
UHGV-0173511_3	Pfam	PF08291	Peptidase M15	Peptidase_M15_3
UHGV-0173511_3	COG	COG3108	NA	NA
UHGV-0173511_3	Structural annotation	PF05951, COG3108	NA	NA
UHGV-0173511_4	KOfam	K10804	tesA; acyl-CoA thioesterase I [EC:3.1.2.- 3.1.2.2 3.1.1.2 3.1.1.5]	NA
UHGV-0173511_4	PHROG	phrog_5240	tail fiber protein	tail
UHGV-0173511_4	UniRef90	UniRef90_A0A3E2TYR6	SGNH/GDSL hydrolase family protein	NA
UHGV-0173511_4	eggNOG-mapper	411463.EUBVEN_01828	lipolytic protein G-D-S-L family	NA
UHGV-0173511_4	Pfam	PF13472	GDSL-like Lipase/Acylhydrolase family	Lipase_GDSL_2
UHGV-0173511_4	COG	COG2755	Lysophospholipase L1 or related esterase. Includes spore coat protein LipC/YcsK	NA
UHGV-0173511_4	Structural annotation	PF16255, NF007819, COG2755	NA	NA
UHGV-0173511_5	KOfam	K20846	cgkA; kappa-carrageenase [EC:3.2.1.83]	NA
UHGV-0173511_5	PHROG	phrog_215	structural protein with Ig domain	head and packaging
UHGV-0173511_5	UniRef90	UniRef90_UPI001A917BC6	Ig-like domain-containing protein	NA
UHGV-0173511_5	eggNOG-mapper	657322.FPR_13550	Bacterial Ig-like domain (group 2)	NA
UHGV-0173511_5	Pfam	PF02368	Bacterial Ig-like domain (group 2)	Big_2
UHGV-0173511_5	COG	COG5492	NA	NA
UHGV-0173511_6	eggNOG-mapper	1304866.K413DRAFT_1235	PFAM Phage tail protein	NA
UHGV-0173511_6	COG	COG4722	Phage-related protein YomH	NA
UHGV-0173511_6	Structural annotation	PF11681, TIGR01633, COG4722	NA	NA
UHGV-0173511_8	PHROG	phrog_3558	tail protein	tail
UHGV-0173511_8	UniRef90	UniRef90_A0A3E2U3C8	Prophage_tail domain-containing protein	NA
UHGV-0173511_8	eggNOG-mapper	1391188.A0A068EMP3_9CAUD	NA	NA
UHGV-0173511_8	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0173511_8	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0173511_9	PHROG	phrog_28775	tail length tape measure protein	tail
UHGV-0173511_9	eggNOG-mapper	748224.HMPREF9436_00699	Phage tail tape measure protein, TP901 family	NA
UHGV-0173511_9	COG	COG1511	NA	NA
UHGV-0173511_10	PHROG	phrog_1633	NA	unknown function
UHGV-0173511_11	PHROG	phrog_1526	NA	unknown function
UHGV-0173511_11	eggNOG-mapper	936375.HMPREF1152_0686	NA	NA
UHGV-0173511_12	PHROG	phrog_117	major tail protein	tail
UHGV-0173511_12	UniRef90	UniRef90_A0A3E2U249	Phage tail protein	NA
UHGV-0173511_12	eggNOG-mapper	748224.HMPREF9436_00696	domain, Protein	NA
UHGV-0173511_12	COG	COG5492	NA	NA
UHGV-0173511_12	Structural annotation	PF04630, TIGR01603, COG5437	NA	NA
UHGV-0173511_13	PHROG	phrog_123	tail terminator	connector
UHGV-0173511_13	eggNOG-mapper	748224.HMPREF9436_00695	NA	NA
UHGV-0173511_13	Structural annotation	PF06141	NA	NA
UHGV-0173511_14	PHROG	phrog_387	neck protein	connector
UHGV-0173511_14	eggNOG-mapper	1321784.HMPREF1987_01077	NA	NA
UHGV-0173511_15	PHROG	phrog_501	head closure Hc1	connector
UHGV-0173511_15	UniRef90	UniRef90_A0A139QHM6	Phage-associated protein	NA
UHGV-0173511_15	eggNOG-mapper	748224.HMPREF9436_00693	NA	NA
UHGV-0173511_15	Structural annotation	PF12206, COG5614	NA	NA
UHGV-0173511_16	PHROG	phrog_137	head-tail adaptor Ad1	connector
UHGV-0173511_16	UniRef90	UniRef90_E2ZGA8	Phage protein Gp19/Gp15/Gp42	NA
UHGV-0173511_16	eggNOG-mapper	762211.BSTEL_0628	Phage protein Gp19/Gp15/Gp42	NA
UHGV-0173511_16	Structural annotation	PF09355	NA	NA
UHGV-0173511_17	PHROG	phrog_267	major head protein	head and packaging
UHGV-0173511_17	UniRef90	UniRef90_A0A4P8IA69	Phage capsid and scaffold	NA
UHGV-0173511_17	eggNOG-mapper	748224.HMPREF9436_03335	NA	NA
UHGV-0173511_17	Structural annotation	PF11651, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0173511_18	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0173511_18	UniRef90	UniRef90_D4K444	Phage minor structural protein GP20	NA
UHGV-0173511_18	eggNOG-mapper	748224.HMPREF9436_03336	Phage minor structural protein GP20	NA
UHGV-0173511_18	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0173511_18	Structural annotation	PF06810, MF_02110	NA	NA
UHGV-0173511_19	PHROG	phrog_478	site-specific recombination directionality factor RDF	integration and excision
UHGV-0173511_19	UniRef90	UniRef90_A0A373Q857	YopX domain-containing protein	NA
UHGV-0173511_19	eggNOG-mapper	1111121.HMPREF1247_0834	NA	NA
UHGV-0173511_21	PHROG	phrog_193	head maturation protease	head and packaging
UHGV-0173511_21	UniRef90	UniRef90_A0A6N8H118	CdiA_C domain-containing protein	NA
UHGV-0173511_21	eggNOG-mapper	748224.HMPREF9436_01469	NA	NA
UHGV-0173511_21	COG	COG5529	Phage-encoded DNA-binding protein ECs1768, contains HTH and DnaT DNA-binding domains	NA
UHGV-0173511_22	PHROG	phrog_104	portal protein	head and packaging
UHGV-0173511_22	UniRef90	UniRef90_A0A3E2U200	Phage portal protein	NA
UHGV-0173511_22	eggNOG-mapper	748224.HMPREF9436_01468	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0173511_22	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0173511_22	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0173511_23	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0173511_23	UniRef90	UniRef90_UPI001F1A3C47	terminase large subunit	NA
UHGV-0173511_23	eggNOG-mapper	748224.HMPREF9436_01467	phage terminase, large subunit	NA
UHGV-0173511_23	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0173511_23	Structural annotation	PF20441, PF03354, MF_04146, NF033889, COG4626	NA	NA
UHGV-0173511_24	UniRef90	UniRef90_R6GFM0	Conserved domain protein	NA
UHGV-0173511_24	Structural annotation	PF19962	NA	NA
UHGV-0173511_25	PHROG	phrog_338	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0173511_25	UniRef90	UniRef90_UPI0015F33F36	HNH endonuclease	NA
UHGV-0173511_25	eggNOG-mapper	748224.HMPREF9436_01465	NA	NA
UHGV-0173511_26	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0173511_26	UniRef90	UniRef90_A0A3E2U224	Sigma70_r4_2 domain-containing protein	NA
UHGV-0173511_26	eggNOG-mapper	748224.HMPREF9436_01463	NA	NA
UHGV-0173511_26	Pfam	PF08281	Sigma-70, region 4	Sigma70_r4_2
UHGV-0173511_26	Structural annotation	PF04545, MF_00674, NF009180, COG1342	NA	NA
UHGV-0173511_27	PHROG	phrog_757	DNA methyltransferase	other
UHGV-0173511_27	UniRef90	UniRef90_A0A3E2U1Y9	DNA cytosine methyltransferase	NA
UHGV-0173511_27	eggNOG-mapper	748224.HMPREF9436_03069	DNA (cytosine-5-)-methyltransferase activity	NA
UHGV-0173511_27	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0173511_27	Structural annotation	PF00145, MF_01872, TIGR00675, COG0270	NA	NA
UHGV-0173511_28	UniRef90	UniRef90_UPI000CF85C21	NA	NA
UHGV-0173511_29	KOfam	K15773	hipB; HTH-type transcriptional regulator / antitoxin HipB	NA
UHGV-0173511_29	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0173511_29	UniRef90	UniRef90_A0A1M7Y3S0	Helix-turn-helix	NA
UHGV-0173511_29	eggNOG-mapper	1235790.C805_00648	Helix-turn-helix XRE-family like proteins	NA
UHGV-0173511_29	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0173511_29	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0173511_29	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0173511_29	Structural annotation	PF12844, MF_00535, NF041951, COG1396	NA	NA
UHGV-0173511_30	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-0173511_30	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0173511_30	UniRef90	UniRef90_A0A3E2U3E3	DNA helicase	NA
UHGV-0173511_30	eggNOG-mapper	411471.SUBVAR_05838	Participates in initiation and elongation during chromosome replication	NA
UHGV-0173511_30	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-0173511_30	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0173511_30	COG	COG0305	Replicative DNA helicase	NA
UHGV-0173511_30	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-0173511_31	PHROG	phrog_678	replication initiation O-like	DNA, RNA and nucleotide metabolism
UHGV-0173511_31	UniRef90	UniRef90_A0A3E2U1Y3	Helix-turn-helix domain-containing protein	NA
UHGV-0173511_31	eggNOG-mapper	1232446.BAIE02000002_gene816	NA	NA
UHGV-0173511_31	Pfam	PF13730	Helix-turn-helix domain	HTH_36
UHGV-0173511_31	Structural annotation	PF05584, MF_01819, TIGR01610, COG5625	NA	NA
UHGV-0173511_32	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0173511_32	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0173511_32	UniRef90	UniRef90_A0A3E2U1Y5	Single-stranded DNA-binding protein	NA
UHGV-0173511_32	eggNOG-mapper	748224.HMPREF9436_00638	Single-stranded DNA-binding protein	NA
UHGV-0173511_32	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0173511_32	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0173511_32	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0173511_32	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0173511_32	Structural annotation	PF00436, MF_00984, NF005579, COG0629	NA	NA
UHGV-0173511_33	PHROG	phrog_7566	NA	unknown function
UHGV-0173511_33	eggNOG-mapper	411471.SUBVAR_05830	NA	NA
UHGV-0173511_36	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0173511_36	eggNOG-mapper	411471.SUBVAR_05829	NA	NA
UHGV-0173511_36	Structural annotation	PF05772, NF007281	NA	NA
UHGV-0173511_37	Structural annotation	PF04098, TIGR00607, COG4712	NA	NA
UHGV-0173511_38	Structural annotation	NF033787	NA	NA
UHGV-0173511_44	PHROG	phrog_37789	NA	unknown function
UHGV-0173511_46	eggNOG-mapper	1519439.JPJG01000059_gene1909	NA	NA
UHGV-0173511_47	Structural annotation	PF12957	NA	NA
UHGV-0173511_50	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-0173511_50	PHROG	phrog_5823	transcriptional regulator	transcription regulation
UHGV-0173511_50	UniRef90	UniRef90_A0A3E2U242	Helix-turn-helix domain-containing protein	NA
UHGV-0173511_50	eggNOG-mapper	888060.HMPREF9081_1958	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0173511_50	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0173511_50	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0173511_51	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-0173511_51	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0173511_51	UniRef90	UniRef90_A0A3E2U313	Repressor LexA	NA
UHGV-0173511_51	eggNOG-mapper	748224.HMPREF9436_01793	NA	NA
UHGV-0173511_51	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0173511_51	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-0173511_51	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0173511_51	Structural annotation	PF00717, PF01381, MF_00015, TIGR00498, COG1974	NA	NA
UHGV-0173511_53	PHROG	phrog_17982	NA	unknown function
UHGV-0173511_53	UniRef90	UniRef90_UPI001E327D94	NA	NA
UHGV-0173511_53	eggNOG-mapper	720554.Clocl_1541	NA	NA
UHGV-0173511_53	Pfam	PF14020	NA	DUF4236
UHGV-0173511_54	KOfam	K14059	int; integrase	NA
UHGV-0173511_54	PHROG	phrog_1	integrase	integration and excision
UHGV-0173511_54	UniRef90	UniRef90_A0A0W7TNE8	Tyr recombinase domain-containing protein	NA
UHGV-0173511_54	eggNOG-mapper	411471.SUBVAR_05816	Belongs to the 'phage' integrase family	NA
UHGV-0173511_54	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0173511_54	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0173511_54	Structural annotation	PF00589, MF_01808, NF007246, COG4974	NA	NA