UHGV-0173516

Genome information

Genome length 38,679 bps

CDS count 57

Completeness 97.65% (high-quality)

geNomad score 0.9815

Prediction confidence Confident

Genome information
Genome ID	UHGV-0173516
vOTU ID	vOTU-010899
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_590439
BioSample	SAMN09781754
Country	Madagascar
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	97.65% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	22
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9815
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	68.04
Jumbo phage	No

Genome content
Genome length	38,679 bps
GC content	43.23%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	57
CDS density	92.49%
Average CDS length	631.11 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0173516_2	PHROG	phrog_3099	NA	unknown function
UHGV-0173516_2	eggNOG-mapper	632245.CLP_1654	NA	NA
UHGV-0173516_2	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0173516_3	UniRef90	UniRef90_UPI001D09DA0D	ABC transporter permease	NA
UHGV-0173516_3	Structural annotation	PF16807	NA	NA
UHGV-0173516_4	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0173516_4	UniRef90	UniRef90_UPI001D09B824	minor capsid protein	NA
UHGV-0173516_4	eggNOG-mapper	642492.Clole_0824	Minor capsid protein	NA
UHGV-0173516_4	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0173516_4	Structural annotation	PF11114	NA	NA
UHGV-0173516_5	UniRef90	UniRef90_UPI001E2BB5D0	minor capsid protein	NA
UHGV-0173516_5	Structural annotation	PF20536	NA	NA
UHGV-0173516_7	PHROG	phrog_212	major head protein	head and packaging
UHGV-0173516_7	UniRef90	UniRef90_UPI00189A455D	phage capsid protein	NA
UHGV-0173516_7	eggNOG-mapper	552396.HMPREF0863_00277	NA	NA
UHGV-0173516_7	Structural annotation	PF05065, MF_04119, NF041162, COG4653	NA	NA
UHGV-0173516_8	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0173516_8	UniRef90	UniRef90_UPI001897D024	phage scaffolding protein	NA
UHGV-0173516_8	eggNOG-mapper	1232449.BAHV02000010_gene2713	NA	NA
UHGV-0173516_8	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0173516_8	Structural annotation	PF06810	NA	NA
UHGV-0173516_9	PHROG	phrog_3675	NA	unknown function
UHGV-0173516_9	UniRef90	UniRef90_UPI001D09CC06	YjcQ family protein	NA
UHGV-0173516_9	eggNOG-mapper	1122173.AXVL01000018_gene435	YjcQ protein	NA
UHGV-0173516_9	Pfam	PF09639	YjcQ protein	YjcQ
UHGV-0173516_10	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0173516_10	UniRef90	UniRef90_UPI001D0B3D9B	phage minor capsid protein	NA
UHGV-0173516_10	eggNOG-mapper	552396.HMPREF0863_00280	Phage minor capsid protein 2	NA
UHGV-0173516_10	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0173516_10	COG	COG2369	NA	NA
UHGV-0173516_10	Structural annotation	PF06152	NA	NA
UHGV-0173516_11	PHROG	phrog_533	portal protein	head and packaging
UHGV-0173516_11	UniRef90	UniRef90_UPI001430A874	phage portal protein	NA
UHGV-0173516_11	eggNOG-mapper	552396.HMPREF0863_00281	phage minor capsid protein	NA
UHGV-0173516_11	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0173516_12	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0173516_12	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0173516_12	UniRef90	UniRef90_UPI001D0AA0D4	terminase family protein	NA
UHGV-0173516_12	eggNOG-mapper	552396.HMPREF0863_00282	DNA packaging	NA
UHGV-0173516_12	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0173516_12	COG	COG1783	Phage terminase large subunit	NA
UHGV-0173516_12	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0173516_13	PHROG	phrog_2412	NA	unknown function
UHGV-0173516_13	UniRef90	UniRef90_UPI000427CABE	KGG domain-containing protein	NA
UHGV-0173516_13	eggNOG-mapper	1232449.BAHV02000018_gene1532	NA	NA
UHGV-0173516_14	KOfam	K07319	yhdJ; adenine-specific DNA-methyltransferase [EC:2.1.1.72]	NA
UHGV-0173516_14	PHROG	phrog_498	DNA methyltransferase	other
UHGV-0173516_14	UniRef90	UniRef90_UPI001D0A8584	DNA modification methylase	NA
UHGV-0173516_14	eggNOG-mapper	521003.COLINT_02335	DNA methylase	NA
UHGV-0173516_14	PADLOC	MTase_II_00015	Type II methyltransferase	RM
UHGV-0173516_14	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0173516_14	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0173516_14	COG	COG0863	DNA modification methylase	NA
UHGV-0173516_14	Structural annotation	PF01555, PF02195, MF_02015, MF_01872, NF010253, TIGR04285, COG0863, COG1475	NA	NA
UHGV-0173516_15	Structural annotation	TIGR01637	NA	NA
UHGV-0173516_16	KOfam	K14440	SMARCAL1, HARP; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 [EC:5.6.2.-]	NA
UHGV-0173516_16	PHROG	phrog_62	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0173516_16	UniRef90	UniRef90_UPI001E5F6A13	DEAD/DEAH box helicase	NA
UHGV-0173516_16	eggNOG-mapper	552396.HMPREF0863_00284	SNF2 family N-terminal domain	NA
UHGV-0173516_16	PADLOC	ZorD1_00007	SWI2/SNF2 helicase, Mrr-like nuclease	Zorya
UHGV-0173516_16	Pfam	PF00176	SNF2-related domain	SNF2-rel_dom
UHGV-0173516_16	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-0173516_16	COG	COG0553	Superfamily II DNA or RNA helicase, SNF2 family	NA
UHGV-0173516_16	Structural annotation	PF13872, PF16203, MF_01821, NF041790, COG0553	NA	NA
UHGV-0173516_17	PHROG	phrog_93	endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0173516_17	UniRef90	UniRef90_UPI00189BA373	VRR-NUC domain-containing protein	NA
UHGV-0173516_17	eggNOG-mapper	1122146.AUHP01000010_gene1025	VRR_NUC	NA
UHGV-0173516_17	Structural annotation	PF01870, MF_00130, NF040854, COG1591	NA	NA
UHGV-0173516_19	PHROG	phrog_2245	nucleoside triphosphate pyrophosphohydrolase	other
UHGV-0173516_19	UniRef90	UniRef90_A0A0G9MB91	MazG domain-containing protein	NA
UHGV-0173516_19	eggNOG-mapper	1680.BADO_1259	NA	NA
UHGV-0173516_19	Structural annotation	PF12643, MF_01020, TIGR03188, COG0140	NA	NA
UHGV-0173516_20	PHROG	phrog_256	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0173516_20	UniRef90	UniRef90_UPI001D0A1C03	virulence-associated E family protein	NA
UHGV-0173516_20	eggNOG-mapper	552396.HMPREF0863_00286	NA	NA
UHGV-0173516_20	Pfam	PF05272	Virulence-associated protein E-like domain	VapE-like_dom
UHGV-0173516_20	COG	COG5545	Predicted P-loop ATPase and inactivated derivatives	NA
UHGV-0173516_20	Structural annotation	PF05272, MF_04000, NF005477, NF040562, COG5545	NA	NA
UHGV-0173516_23	KOfam	K02334	dpo; DNA polymerase bacteriophage-type [EC:2.7.7.7]	NA
UHGV-0173516_23	PHROG	phrog_17	DNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-0173516_23	UniRef90	UniRef90_UPI001D0A031A	DNA polymerase	NA
UHGV-0173516_23	eggNOG-mapper	1235796.C815_00942	DNA polymerase	NA
UHGV-0173516_23	Pfam	PF00476	DNA polymerase family A	DNA_pol_A
UHGV-0173516_23	COG	COG0749	DNA polymerase I, 3'-5' exonuclease and polymerase domains	NA
UHGV-0173516_23	Structural annotation	PF00476, MF_04101, NF011540, COG0749	NA	NA
UHGV-0173516_24	PHROG	phrog_112	Gp2.5-like ssDNA binding protein and ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0173516_24	UniRef90	UniRef90_UPI0018993946	NA	NA
UHGV-0173516_24	eggNOG-mapper	552396.HMPREF0863_00290	NA	NA
UHGV-0173516_24	Pfam	PF10991	Enterobacter phage Enc34, ssDNA-binding protein	Enc34_ssDNA-bd
UHGV-0173516_24	Structural annotation	PF10991, MF_04153	NA	NA
UHGV-0173516_25	PHROG	phrog_69	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0173516_25	UniRef90	UniRef90_UPI001D0AE809	NA	NA
UHGV-0173516_25	eggNOG-mapper	1235796.C815_00944	NA	NA
UHGV-0173516_25	Pfam	PF10926	NA	DUF2800
UHGV-0173516_25	COG	COG2887	RecB family exonuclease	NA
UHGV-0173516_25	Structural annotation	PF10926, MF_03030, TIGR00372, COG2887	NA	NA
UHGV-0173516_28	Structural annotation	PF06786	NA	NA
UHGV-0173516_29	Structural annotation	NF040990	NA	NA
UHGV-0173516_31	Structural annotation	PF07378, MF_00783, COG5443	NA	NA
UHGV-0173516_34	KOfam	K18830	pezA; HTH-type transcriptional regulator / antitoxin PezA	NA
UHGV-0173516_34	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0173516_34	UniRef90	UniRef90_UPI00189831EE	helix-turn-helix domain-containing protein	NA
UHGV-0173516_34	eggNOG-mapper	999413.HMPREF1094_02045	Helix-turn-helix XRE-family like proteins	NA
UHGV-0173516_34	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0173516_34	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0173516_34	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0173516_35	PHROG	phrog_2967	transcriptional regulator	transcription regulation
UHGV-0173516_35	UniRef90	UniRef90_UPI001D09EDED	helix-turn-helix domain-containing protein	NA
UHGV-0173516_35	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0173516_35	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0173516_35	Structural annotation	PF00717, PF01381, MF_00015, TIGR00498, COG2932	NA	NA
UHGV-0173516_36	KOfam	K14059	int; integrase	NA
UHGV-0173516_36	PHROG	phrog_1	integrase	integration and excision
UHGV-0173516_36	UniRef90	UniRef90_UPI00189BAE2B	site-specific integrase	NA
UHGV-0173516_36	eggNOG-mapper	1095750.HMPREF9970_0588	Arm DNA-binding domain	NA
UHGV-0173516_36	Pfam	PF14657	Arm DNA-binding domain	Arm-DNA-bind_4
UHGV-0173516_36	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0173516_36	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0173516_36	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0173516_36	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-0173516_38	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-0173516_38	PHROG	phrog_5823	transcriptional regulator	transcription regulation
UHGV-0173516_38	UniRef90	UniRef90_UPI001D0A947F	helix-turn-helix transcriptional regulator	NA
UHGV-0173516_38	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0173516_38	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0173516_38	Structural annotation	PF13443, MF_02017, NF041951, COG3655	NA	NA
UHGV-0173516_40	Structural annotation	PF19824, TIGR03090	NA	NA
UHGV-0173516_41	PHROG	phrog_1863	NA	unknown function
UHGV-0173516_42	PHROG	phrog_443	holin	lysis
UHGV-0173516_42	UniRef90	UniRef90_UPI001896A9B9	holin	NA
UHGV-0173516_42	eggNOG-mapper	1125712.HMPREF1316_2355	Putative lactococcus lactis phage r1t holin	NA
UHGV-0173516_42	Pfam	PF16945	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
UHGV-0173516_42	Structural annotation	PF16945	NA	NA
UHGV-0173516_43	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0173516_44	PHROG	phrog_16490	NA	unknown function
UHGV-0173516_44	eggNOG-mapper	1235790.C805_00060	NA	NA
UHGV-0173516_45	PHROG	phrog_22984	NA	unknown function
UHGV-0173516_46	PHROG	phrog_21718	NA	unknown function
UHGV-0173516_46	UniRef90	UniRef90_A0A8D9PDT7	Membrane fusogenic activity protein	NA
UHGV-0173516_46	eggNOG-mapper	1235790.C805_00058	NA	NA
UHGV-0173516_48	PHROG	phrog_11037	NA	unknown function
UHGV-0173516_48	UniRef90	UniRef90_UPI001D0AE32A	SH3 domain-containing protein	NA
UHGV-0173516_48	eggNOG-mapper	428127.EUBDOL_01569	NA	NA
UHGV-0173516_48	Pfam	PF08460	Bacterial SH3 domain	SH3_5
UHGV-0173516_48	Structural annotation	PF08460, PF01551, NF040883, NF033202, COG0739, COG4991	NA	NA
UHGV-0173516_49	PHROG	phrog_134	NA	unknown function
UHGV-0173516_49	UniRef90	UniRef90_A0A373VIX2	XkdX family protein	NA
UHGV-0173516_49	Pfam	PF09693	Phage uncharacterised protein (Phage_XkdX)	Phage_XkdX
UHGV-0173516_49	NCBIFam	TIGR01669.1	XkdX family protein	NA
UHGV-0173516_49	Structural annotation	PF09693, TIGR01669	NA	NA
UHGV-0173516_50	PHROG	phrog_24451	NA	unknown function
UHGV-0173516_50	eggNOG-mapper	908340.HMPREF9406_2565	NA	NA
UHGV-0173516_51	PHROG	phrog_4492	tail fiber protein	tail
UHGV-0173516_51	eggNOG-mapper	756499.Desde_1105	NA	NA
UHGV-0173516_51	Structural annotation	PF03425, NF033675	NA	NA
UHGV-0173516_52	PHROG	phrog_9534	head protein	head and packaging
UHGV-0173516_52	eggNOG-mapper	748224.HMPREF9436_00702	COG NOG18825 non supervised orthologous group	NA
UHGV-0173516_53	PHROG	phrog_538	minor tail protein	tail
UHGV-0173516_53	UniRef90	UniRef90_UPI00189C3ED1	siphovirus ReqiPepy6 Gp37-like family protein	NA
UHGV-0173516_53	eggNOG-mapper	428127.EUBDOL_01212	NA	NA
UHGV-0173516_53	Pfam	PF14594	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
UHGV-0173516_53	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0173516_54	PHROG	phrog_36410	NA	unknown function
UHGV-0173516_54	UniRef90	UniRef90_UPI001897DDB7	phage tail family protein	NA
UHGV-0173516_54	eggNOG-mapper	428127.EUBDOL_01213	phage tail	NA
UHGV-0173516_54	COG	COG4722	Phage-related protein YomH	NA
UHGV-0173516_54	Structural annotation	PF16774, PF20753, TIGR01633, COG4722	NA	NA
UHGV-0173516_55	PHROG	phrog_1686	tail length tape measure protein	tail
UHGV-0173516_55	UniRef90	UniRef90_UPI001D0A3DB9	tape measure protein	NA
UHGV-0173516_55	eggNOG-mapper	999413.HMPREF1094_00207	nuclear chromosome segregation	NA
UHGV-0173516_55	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-0173516_55	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-0173516_55	COG	COG5280	Phage-related minor tail protein	NA
UHGV-0173516_55	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-0173516_56	PHROG	phrog_706	NA	unknown function
UHGV-0173516_56	UniRef90	UniRef90_UPI001D0AAED0	bacteriophage Gp15 family protein	NA
UHGV-0173516_56	eggNOG-mapper	999413.HMPREF1094_00208	Bacteriophage Gp15 protein	NA
UHGV-0173516_56	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0173516_56	Structural annotation	PF06854	NA	NA
UHGV-0173516_57	Structural annotation	PF10666	NA	NA